[INFO] fetching crate openmm-sys 7.4.1...
[INFO] testing openmm-sys-7.4.1 against 1.47.0 for beta-1.48-1
[INFO] extracting crate openmm-sys 7.4.1 into /workspace/builds/worker-9/source
[INFO] validating manifest of crates.io crate openmm-sys 7.4.1 on toolchain 1.47.0
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+1.47.0" "read-manifest" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] started tweaking crates.io crate openmm-sys 7.4.1
[INFO] finished tweaking crates.io crate openmm-sys 7.4.1
[INFO] tweaked toml for crates.io crate openmm-sys 7.4.1 written to /workspace/builds/worker-9/source/Cargo.toml
[INFO] crate crates.io crate openmm-sys 7.4.1 already has a lockfile, it will not be regenerated
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+1.47.0" "fetch" "--locked" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-9/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-9/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:d92eaeed33fa75130ca1ee6c8a01d1ffb62bac859dfdfb3450e3e5d1c0146529" "/opt/rustwide/cargo-home/bin/cargo" "+1.47.0" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 878c420aa80f607ed741d5970283c3d538799e02375567401aeb860cceec48ab
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] running `Command { std: "docker" "start" "-a" "878c420aa80f607ed741d5970283c3d538799e02375567401aeb860cceec48ab", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "878c420aa80f607ed741d5970283c3d538799e02375567401aeb860cceec48ab", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "878c420aa80f607ed741d5970283c3d538799e02375567401aeb860cceec48ab", kill_on_drop: false }`
[INFO] [stdout] 878c420aa80f607ed741d5970283c3d538799e02375567401aeb860cceec48ab
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-9/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-9/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:d92eaeed33fa75130ca1ee6c8a01d1ffb62bac859dfdfb3450e3e5d1c0146529" "/opt/rustwide/cargo-home/bin/cargo" "+1.47.0" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 53d9147e6b6c8eb83df4455292d6b697a15354022cba07be76817cd9f9595718
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] running `Command { std: "docker" "start" "-a" "53d9147e6b6c8eb83df4455292d6b697a15354022cba07be76817cd9f9595718", kill_on_drop: false }`
[INFO] [stderr]    Compiling cc v1.0.59
[INFO] [stderr]    Compiling cmake v0.1.44
[INFO] [stderr]    Compiling openmm-sys v7.4.1 (/opt/rustwide/workdir)
[INFO] [stderr] The following warnings were emitted during compilation:
[INFO] [stderr] 
[INFO] [stderr] warning: [OpenMM-sys] Dynamically linking against the OpenMM library.
[INFO] [stderr] 
[INFO] [stderr] error: failed to run custom build command for `openmm-sys v7.4.1 (/opt/rustwide/workdir)`
[INFO] [stderr] 
[INFO] [stderr] Caused by:
[INFO] [stderr]   process didn't exit successfully: `/opt/rustwide/target/debug/build/openmm-sys-6b2d4898d35049f7/build-script-build` (exit code: 101)
[INFO] [stderr]   --- stdout
[INFO] [stderr]   cargo:warning=[OpenMM-sys] Dynamically linking against the OpenMM library.
[INFO] [stderr]   running: "cmake" "/opt/rustwide/workdir/openmm" "-DOPENMM_BUILD_PYTHON_WRAPPERS=OFF" "-DCMAKE_INSTALL_PREFIX=/opt/rustwide/target/debug/build/openmm-sys-aa2eea24065d9fd8/out" "-DCMAKE_C_FLAGS= -ffunction-sections -fdata-sections -fPIC -m64" "-DCMAKE_C_COMPILER=/usr/bin/cc" "-DCMAKE_CXX_FLAGS= -ffunction-sections -fdata-sections -fPIC -m64" "-DCMAKE_CXX_COMPILER=/usr/bin/c++" "-DCMAKE_ASM_FLAGS= -ffunction-sections -fdata-sections -fPIC -m64" "-DCMAKE_ASM_COMPILER=/usr/bin/cc" "-DCMAKE_BUILD_TYPE=Release"
[INFO] [stderr]   -- Found PythonInterp: /usr/bin/python (found version "2.7.18") 
[INFO] [stderr]   -- The C compiler identification is GNU 9.3.0
[INFO] [stderr]   -- The CXX compiler identification is GNU 9.3.0
[INFO] [stderr]   -- Check for working C compiler: /usr/bin/cc
[INFO] [stderr]   -- Check for working C compiler: /usr/bin/cc -- works
[INFO] [stderr]   -- Detecting C compiler ABI info
[INFO] [stderr]   -- Detecting C compiler ABI info - done
[INFO] [stderr]   -- Detecting C compile features
[INFO] [stderr]   -- Detecting C compile features - done
[INFO] [stderr]   -- Check for working CXX compiler: /usr/bin/c++
[INFO] [stderr]   -- Check for working CXX compiler: /usr/bin/c++ -- works
[INFO] [stderr]   -- Detecting CXX compiler ABI info
[INFO] [stderr]   -- Detecting CXX compiler ABI info - done
[INFO] [stderr]   -- Detecting CXX compile features
[INFO] [stderr]   -- Detecting CXX compile features - done
[INFO] [stderr]   -- Configuring incomplete, errors occurred!
[INFO] [stderr]   See also "/opt/rustwide/target/debug/build/openmm-sys-aa2eea24065d9fd8/out/build/CMakeFiles/CMakeOutput.log".
[INFO] [stderr] 
[INFO] [stderr]   --- stderr
[INFO] [stderr]   fatal: not a git repository (or any parent up to mount point /opt/rustwide)
[INFO] [stderr]   Stopping at filesystem boundary (GIT_DISCOVERY_ACROSS_FILESYSTEM not set).
[INFO] [stderr]   CMake Deprecation Warning at CMakeLists.txt:25 (CMAKE_POLICY):
[INFO] [stderr]     The OLD behavior for policy CMP0042 will be removed from a future version
[INFO] [stderr]     of CMake.
[INFO] [stderr] 
[INFO] [stderr]     The cmake-policies(7) manual explains that the OLD behaviors of all
[INFO] [stderr]     policies are deprecated and that a policy should be set to OLD only under
[INFO] [stderr]     specific short-term circumstances.  Projects should be ported to the NEW
[INFO] [stderr]     behavior and not rely on setting a policy to OLD.
[INFO] [stderr] 
[INFO] [stderr] 
[INFO] [stderr]   CMake Error at /usr/share/cmake-3.16/Modules/FindPackageHandleStandardArgs.cmake:146 (message):
[INFO] [stderr]     Could NOT find Doxygen (missing: DOXYGEN_EXECUTABLE)
[INFO] [stderr]   Call Stack (most recent call first):
[INFO] [stderr]     /usr/share/cmake-3.16/Modules/FindPackageHandleStandardArgs.cmake:393 (_FPHSA_FAILURE_MESSAGE)
[INFO] [stderr]     /usr/share/cmake-3.16/Modules/FindDoxygen.cmake:633 (find_package_handle_standard_args)
[INFO] [stderr]     wrappers/CMakeLists.txt:1 (find_package)
[INFO] [stderr] 
[INFO] [stderr] 
[INFO] [stderr]   thread 'main' panicked at '
[INFO] [stderr]   command did not execute successfully, got: exit code: 1
[INFO] [stderr] 
[INFO] [stderr]   build script failed, must exit now', /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/cmake-0.1.44/src/lib.rs:885:5
[INFO] [stderr]   stack backtrace:
[INFO] [stderr]      0:     0x562f70479170 - std::backtrace_rs::backtrace::libunwind::trace::h577ea05e9ca4629a
[INFO] [stderr]                                  at /rustc/18bf6b4f01a6feaf7259ba7cdae58031af1b7b39/library/std/src/../../backtrace/src/backtrace/libunwind.rs:96
[INFO] [stderr]      1:     0x562f70479170 - std::backtrace_rs::backtrace::trace_unsynchronized::h50b9b72b84c7dd56
[INFO] [stderr]                                  at /rustc/18bf6b4f01a6feaf7259ba7cdae58031af1b7b39/library/std/src/../../backtrace/src/backtrace/mod.rs:66
[INFO] [stderr]      2:     0x562f70479170 - std::sys_common::backtrace::_print_fmt::h6541cf9823837fac
[INFO] [stderr]                                  at /rustc/18bf6b4f01a6feaf7259ba7cdae58031af1b7b39/library/std/src/sys_common/backtrace.rs:79
[INFO] [stderr]      3:     0x562f70479170 - <std::sys_common::backtrace::_print::DisplayBacktrace as core::fmt::Display>::fmt::hf64fbff071026df5
[INFO] [stderr]                                  at /rustc/18bf6b4f01a6feaf7259ba7cdae58031af1b7b39/library/std/src/sys_common/backtrace.rs:58
[INFO] [stderr]      4:     0x562f70498ecc - core::fmt::write::h9ddafa4860d8adff
[INFO] [stderr]                                  at /rustc/18bf6b4f01a6feaf7259ba7cdae58031af1b7b39/library/core/src/fmt/mod.rs:1082
[INFO] [stderr]      5:     0x562f70475b17 - std::io::Write::write_fmt::h1d2ee292d2b65481
[INFO] [stderr]                                  at /rustc/18bf6b4f01a6feaf7259ba7cdae58031af1b7b39/library/std/src/io/mod.rs:1514
[INFO] [stderr]      6:     0x562f7047b8f0 - std::sys_common::backtrace::_print::ha25f9ff5080d886d
[INFO] [stderr]                                  at /rustc/18bf6b4f01a6feaf7259ba7cdae58031af1b7b39/library/std/src/sys_common/backtrace.rs:61
[INFO] [stderr]      7:     0x562f7047b8f0 - std::sys_common::backtrace::print::h213e8aa8dc5405c0
[INFO] [stderr]                                  at /rustc/18bf6b4f01a6feaf7259ba7cdae58031af1b7b39/library/std/src/sys_common/backtrace.rs:48
[INFO] [stderr]      8:     0x562f7047b8f0 - std::panicking::default_hook::{{closure}}::h6482fae49ef9d963
[INFO] [stderr]                                  at /rustc/18bf6b4f01a6feaf7259ba7cdae58031af1b7b39/library/std/src/panicking.rs:200
[INFO] [stderr]      9:     0x562f7047b63c - std::panicking::default_hook::he30ad7589e0970f9
[INFO] [stderr]                                  at /rustc/18bf6b4f01a6feaf7259ba7cdae58031af1b7b39/library/std/src/panicking.rs:219
[INFO] [stderr]     10:     0x562f7047bf53 - std::panicking::rust_panic_with_hook::haa1ed36ada4ffb03
[INFO] [stderr]                                  at /rustc/18bf6b4f01a6feaf7259ba7cdae58031af1b7b39/library/std/src/panicking.rs:569
[INFO] [stderr]     11:     0x562f7047bb29 - std::panicking::begin_panic_handler::{{closure}}::h7001af1bb21aeaeb
[INFO] [stderr]                                  at /rustc/18bf6b4f01a6feaf7259ba7cdae58031af1b7b39/library/std/src/panicking.rs:476
[INFO] [stderr]     12:     0x562f704795fc - std::sys_common::backtrace::__rust_end_short_backtrace::h39910f557f5f2367
[INFO] [stderr]                                  at /rustc/18bf6b4f01a6feaf7259ba7cdae58031af1b7b39/library/std/src/sys_common/backtrace.rs:153
[INFO] [stderr]     13:     0x562f7047bae9 - rust_begin_unwind
[INFO] [stderr]                                  at /rustc/18bf6b4f01a6feaf7259ba7cdae58031af1b7b39/library/std/src/panicking.rs:475
[INFO] [stderr]     14:     0x562f7047ba9b - std::panicking::begin_panic_fmt::hc1b1320af38b7e12
[INFO] [stderr]                                  at /rustc/18bf6b4f01a6feaf7259ba7cdae58031af1b7b39/library/std/src/panicking.rs:429
[INFO] [stderr]     15:     0x562f7040d967 - cmake::fail::h7996d1014279a64e
[INFO] [stderr]     16:     0x562f7040d2c8 - cmake::run::hb2d17caaafe95d56
[INFO] [stderr]     17:     0x562f70408f8f - cmake::Config::build::h1a95bb4f728a0734
[INFO] [stderr]     18:     0x562f70403a42 - build_script_build::main::h7f9a2f33117f31f2
[INFO] [stderr]     19:     0x562f70405c93 - core::ops::function::FnOnce::call_once::h84535a5fffba58d9
[INFO] [stderr]     20:     0x562f70405959 - std::sys_common::backtrace::__rust_begin_short_backtrace::h40d26e893dfce068
[INFO] [stderr]     21:     0x562f704045d9 - std::rt::lang_start::{{closure}}::ha5ac506aef776688
[INFO] [stderr]     22:     0x562f7047c351 - core::ops::function::impls::<impl core::ops::function::FnOnce<A> for &F>::call_once::h6a3209f124be2235
[INFO] [stderr]                                  at /rustc/18bf6b4f01a6feaf7259ba7cdae58031af1b7b39/library/core/src/ops/function.rs:259
[INFO] [stderr]     23:     0x562f7047c351 - std::panicking::try::do_call::h88ce358792b64df0
[INFO] [stderr]                                  at /rustc/18bf6b4f01a6feaf7259ba7cdae58031af1b7b39/library/std/src/panicking.rs:373
[INFO] [stderr]     24:     0x562f7047c351 - std::panicking::try::h6311c259678e50fc
[INFO] [stderr]                                  at /rustc/18bf6b4f01a6feaf7259ba7cdae58031af1b7b39/library/std/src/panicking.rs:337
[INFO] [stderr]     25:     0x562f7047c351 - std::panic::catch_unwind::h56c5716807d659a1
[INFO] [stderr]                                  at /rustc/18bf6b4f01a6feaf7259ba7cdae58031af1b7b39/library/std/src/panic.rs:379
[INFO] [stderr]     26:     0x562f7047c351 - std::rt::lang_start_internal::h73711f37ecfcb277
[INFO] [stderr]                                  at /rustc/18bf6b4f01a6feaf7259ba7cdae58031af1b7b39/library/std/src/rt.rs:51
[INFO] [stderr]     27:     0x562f704045b8 - std::rt::lang_start::hf40136045b6af53b
[INFO] [stderr]     28:     0x562f70403b9b - main
[INFO] [stderr]     29:     0x7f19681750b3 - __libc_start_main
[INFO] [stderr]     30:     0x562f704000ce - _start
[INFO] [stderr]     31:                0x0 - <unknown>
[INFO] running `Command { std: "docker" "inspect" "53d9147e6b6c8eb83df4455292d6b697a15354022cba07be76817cd9f9595718", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "53d9147e6b6c8eb83df4455292d6b697a15354022cba07be76817cd9f9595718", kill_on_drop: false }`
[INFO] [stdout] 53d9147e6b6c8eb83df4455292d6b697a15354022cba07be76817cd9f9595718
