[INFO] fetching crate netcdf-src 0.1.3...
[INFO] testing netcdf-src-0.1.3 against 1.47.0 for beta-1.48-1
[INFO] extracting crate netcdf-src 0.1.3 into /workspace/builds/worker-6/source
[INFO] validating manifest of crates.io crate netcdf-src 0.1.3 on toolchain 1.47.0
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+1.47.0" "read-manifest" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] started tweaking crates.io crate netcdf-src 0.1.3
[INFO] finished tweaking crates.io crate netcdf-src 0.1.3
[INFO] tweaked toml for crates.io crate netcdf-src 0.1.3 written to /workspace/builds/worker-6/source/Cargo.toml
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+1.47.0" "generate-lockfile" "--manifest-path" "Cargo.toml" "-Zno-index-update", kill_on_drop: false }`
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+1.47.0" "fetch" "--locked" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:d92eaeed33fa75130ca1ee6c8a01d1ffb62bac859dfdfb3450e3e5d1c0146529" "/opt/rustwide/cargo-home/bin/cargo" "+1.47.0" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] d4a02fe81459cbc3afe00907c91fc5b0fdbf412a47108b64846244b7f4bfbbc0
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] running `Command { std: "docker" "start" "-a" "d4a02fe81459cbc3afe00907c91fc5b0fdbf412a47108b64846244b7f4bfbbc0", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "d4a02fe81459cbc3afe00907c91fc5b0fdbf412a47108b64846244b7f4bfbbc0", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "d4a02fe81459cbc3afe00907c91fc5b0fdbf412a47108b64846244b7f4bfbbc0", kill_on_drop: false }`
[INFO] [stdout] d4a02fe81459cbc3afe00907c91fc5b0fdbf412a47108b64846244b7f4bfbbc0
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:d92eaeed33fa75130ca1ee6c8a01d1ffb62bac859dfdfb3450e3e5d1c0146529" "/opt/rustwide/cargo-home/bin/cargo" "+1.47.0" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 456cfedf057b9c50cb91a697e2df5e76344d889f781cbfd3e365ea67ffd9430e
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] running `Command { std: "docker" "start" "-a" "456cfedf057b9c50cb91a697e2df5e76344d889f781cbfd3e365ea67ffd9430e", kill_on_drop: false }`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]    Compiling cmake v0.1.44
[INFO] [stderr]    Compiling libz-sys v1.1.2
[INFO] [stderr]    Compiling hdf5-sys v0.7.0
[INFO] [stderr]    Compiling hdf5-src v0.7.0
[INFO] [stderr]    Compiling netcdf-src v0.1.3 (/opt/rustwide/workdir)
[INFO] [stderr] error: failed to run custom build command for `hdf5-sys v0.7.0`
[INFO] [stderr] 
[INFO] [stderr] Caused by:
[INFO] [stderr]   process didn't exit successfully: `/opt/rustwide/target/debug/build/hdf5-sys-bae3e33ff025615d/build-script-build` (exit code: 101)
[INFO] [stderr]   --- stdout
[INFO] [stderr]   Attempting to find HDF5 via pkg-config...
[INFO] [stderr]   cargo:rerun-if-env-changed=HDF5_NO_PKG_CONFIG
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG
[INFO] [stderr]   cargo:rerun-if-env-changed=HDF5_STATIC
[INFO] [stderr]   cargo:rerun-if-env-changed=HDF5_DYNAMIC
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_ALL_STATIC
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_ALL_DYNAMIC
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_PATH_x86_64-unknown-linux-gnu
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_PATH_x86_64_unknown_linux_gnu
[INFO] [stderr]   cargo:rerun-if-env-changed=HOST_PKG_CONFIG_PATH
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_PATH
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR_x86_64-unknown-linux-gnu
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR_x86_64_unknown_linux_gnu
[INFO] [stderr]   cargo:rerun-if-env-changed=HOST_PKG_CONFIG_LIBDIR
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR_x86_64-unknown-linux-gnu
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR_x86_64_unknown_linux_gnu
[INFO] [stderr]   cargo:rerun-if-env-changed=HOST_PKG_CONFIG_SYSROOT_DIR
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR
[INFO] [stderr] 
[INFO] [stderr]   --- stderr
[INFO] [stderr]   thread 'main' panicked at 'Unable to locate HDF5 root directory and/or headers.', /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hdf5-sys-0.7.0/build.rs:549:13
[INFO] [stderr]   stack backtrace:
[INFO] [stderr]      0:     0x5598ecc20290 - std::backtrace_rs::backtrace::libunwind::trace::h577ea05e9ca4629a
[INFO] [stderr]                                  at /rustc/18bf6b4f01a6feaf7259ba7cdae58031af1b7b39/library/std/src/../../backtrace/src/backtrace/libunwind.rs:96
[INFO] [stderr]      1:     0x5598ecc20290 - std::backtrace_rs::backtrace::trace_unsynchronized::h50b9b72b84c7dd56
[INFO] [stderr]                                  at /rustc/18bf6b4f01a6feaf7259ba7cdae58031af1b7b39/library/std/src/../../backtrace/src/backtrace/mod.rs:66
[INFO] [stderr]      2:     0x5598ecc20290 - std::sys_common::backtrace::_print_fmt::h6541cf9823837fac
[INFO] [stderr]                                  at /rustc/18bf6b4f01a6feaf7259ba7cdae58031af1b7b39/library/std/src/sys_common/backtrace.rs:79
[INFO] [stderr]      3:     0x5598ecc20290 - <std::sys_common::backtrace::_print::DisplayBacktrace as core::fmt::Display>::fmt::hf64fbff071026df5
[INFO] [stderr]                                  at /rustc/18bf6b4f01a6feaf7259ba7cdae58031af1b7b39/library/std/src/sys_common/backtrace.rs:58
[INFO] [stderr]      4:     0x5598ecc3eeec - core::fmt::write::h9ddafa4860d8adff
[INFO] [stderr]                                  at /rustc/18bf6b4f01a6feaf7259ba7cdae58031af1b7b39/library/core/src/fmt/mod.rs:1082
[INFO] [stderr]      5:     0x5598ecc1d327 - std::io::Write::write_fmt::h1d2ee292d2b65481
[INFO] [stderr]                                  at /rustc/18bf6b4f01a6feaf7259ba7cdae58031af1b7b39/library/std/src/io/mod.rs:1514
[INFO] [stderr]      6:     0x5598ecc224d0 - std::sys_common::backtrace::_print::ha25f9ff5080d886d
[INFO] [stderr]                                  at /rustc/18bf6b4f01a6feaf7259ba7cdae58031af1b7b39/library/std/src/sys_common/backtrace.rs:61
[INFO] [stderr]      7:     0x5598ecc224d0 - std::sys_common::backtrace::print::h213e8aa8dc5405c0
[INFO] [stderr]                                  at /rustc/18bf6b4f01a6feaf7259ba7cdae58031af1b7b39/library/std/src/sys_common/backtrace.rs:48
[INFO] [stderr]      8:     0x5598ecc224d0 - std::panicking::default_hook::{{closure}}::h6482fae49ef9d963
[INFO] [stderr]                                  at /rustc/18bf6b4f01a6feaf7259ba7cdae58031af1b7b39/library/std/src/panicking.rs:200
[INFO] [stderr]      9:     0x5598ecc2221c - std::panicking::default_hook::he30ad7589e0970f9
[INFO] [stderr]                                  at /rustc/18bf6b4f01a6feaf7259ba7cdae58031af1b7b39/library/std/src/panicking.rs:219
[INFO] [stderr]     10:     0x5598ecc22b33 - std::panicking::rust_panic_with_hook::haa1ed36ada4ffb03
[INFO] [stderr]                                  at /rustc/18bf6b4f01a6feaf7259ba7cdae58031af1b7b39/library/std/src/panicking.rs:569
[INFO] [stderr]     11:     0x5598ecb724fc - std::panicking::begin_panic::{{closure}}::h03a15c04d7a3e80b
[INFO] [stderr]                                  at /rustc/18bf6b4f01a6feaf7259ba7cdae58031af1b7b39/library/std/src/panicking.rs:498
[INFO] [stderr]     12:     0x5598ecb30ed9 - std::sys_common::backtrace::__rust_end_short_backtrace::h0e4d33c7b3f1c454
[INFO] [stderr]                                  at /rustc/18bf6b4f01a6feaf7259ba7cdae58031af1b7b39/library/std/src/sys_common/backtrace.rs:153
[INFO] [stderr]     13:     0x5598ecb72427 - std::panicking::begin_panic::hf6cbc4045c167806
[INFO] [stderr]                                  at /rustc/18bf6b4f01a6feaf7259ba7cdae58031af1b7b39/library/std/src/panicking.rs:497
[INFO] [stderr]     14:     0x5598ec9f62ec - build_script_build::LibrarySearcher::try_locate_hdf5_library::he0cd737444219bf5
[INFO] [stderr]                                  at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hdf5-sys-0.7.0/build.rs:549
[INFO] [stderr]     15:     0x5598ec9f7c6c - build_script_build::main::h52a7fa985fdd501c
[INFO] [stderr]                                  at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hdf5-sys-0.7.0/build.rs:647
[INFO] [stderr]     16:     0x5598ec9fe44b - core::ops::function::FnOnce::call_once::h2a4f77cfff66ac79
[INFO] [stderr]                                  at /rustc/18bf6b4f01a6feaf7259ba7cdae58031af1b7b39/library/core/src/ops/function.rs:227
[INFO] [stderr]     17:     0x5598eca055fe - std::sys_common::backtrace::__rust_begin_short_backtrace::h79e1c4ccb842b70a
[INFO] [stderr]                                  at /rustc/18bf6b4f01a6feaf7259ba7cdae58031af1b7b39/library/std/src/sys_common/backtrace.rs:137
[INFO] [stderr]     18:     0x5598eca034a1 - std::rt::lang_start::{{closure}}::hf363a1af24a4fe81
[INFO] [stderr]                                  at /rustc/18bf6b4f01a6feaf7259ba7cdae58031af1b7b39/library/std/src/rt.rs:66
[INFO] [stderr]     19:     0x5598ecc22f31 - core::ops::function::impls::<impl core::ops::function::FnOnce<A> for &F>::call_once::h6a3209f124be2235
[INFO] [stderr]                                  at /rustc/18bf6b4f01a6feaf7259ba7cdae58031af1b7b39/library/core/src/ops/function.rs:259
[INFO] [stderr]     20:     0x5598ecc22f31 - std::panicking::try::do_call::h88ce358792b64df0
[INFO] [stderr]                                  at /rustc/18bf6b4f01a6feaf7259ba7cdae58031af1b7b39/library/std/src/panicking.rs:373
[INFO] [stderr]     21:     0x5598ecc22f31 - std::panicking::try::h6311c259678e50fc
[INFO] [stderr]                                  at /rustc/18bf6b4f01a6feaf7259ba7cdae58031af1b7b39/library/std/src/panicking.rs:337
[INFO] [stderr]     22:     0x5598ecc22f31 - std::panic::catch_unwind::h56c5716807d659a1
[INFO] [stderr]                                  at /rustc/18bf6b4f01a6feaf7259ba7cdae58031af1b7b39/library/std/src/panic.rs:379
[INFO] [stderr]     23:     0x5598ecc22f31 - std::rt::lang_start_internal::h73711f37ecfcb277
[INFO] [stderr]                                  at /rustc/18bf6b4f01a6feaf7259ba7cdae58031af1b7b39/library/std/src/rt.rs:51
[INFO] [stderr]     24:     0x5598eca03477 - std::rt::lang_start::hc58e40bbe07298aa
[INFO] [stderr]                                  at /rustc/18bf6b4f01a6feaf7259ba7cdae58031af1b7b39/library/std/src/rt.rs:65
[INFO] [stderr]     25:     0x5598ec9f93ba - main
[INFO] [stderr]     26:     0x7f0c962130b3 - __libc_start_main
[INFO] [stderr]     27:     0x5598ec9f10be - _start
[INFO] [stderr]     28:                0x0 - <unknown>
[INFO] [stderr] warning: build failed, waiting for other jobs to finish...
[INFO] [stderr] error: build failed
[INFO] running `Command { std: "docker" "inspect" "456cfedf057b9c50cb91a697e2df5e76344d889f781cbfd3e365ea67ffd9430e", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "456cfedf057b9c50cb91a697e2df5e76344d889f781cbfd3e365ea67ffd9430e", kill_on_drop: false }`
[INFO] [stdout] 456cfedf057b9c50cb91a697e2df5e76344d889f781cbfd3e365ea67ffd9430e
