[INFO] fetching crate flann 0.1.0...
[INFO] testing flann-0.1.0 against 1.47.0 for beta-1.48-1
[INFO] extracting crate flann 0.1.0 into /workspace/builds/worker-3/source
[INFO] validating manifest of crates.io crate flann 0.1.0 on toolchain 1.47.0
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+1.47.0" "read-manifest" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] started tweaking crates.io crate flann 0.1.0
[INFO] finished tweaking crates.io crate flann 0.1.0
[INFO] tweaked toml for crates.io crate flann 0.1.0 written to /workspace/builds/worker-3/source/Cargo.toml
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+1.47.0" "generate-lockfile" "--manifest-path" "Cargo.toml" "-Zno-index-update", kill_on_drop: false }`
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+1.47.0" "fetch" "--locked" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:d92eaeed33fa75130ca1ee6c8a01d1ffb62bac859dfdfb3450e3e5d1c0146529" "/opt/rustwide/cargo-home/bin/cargo" "+1.47.0" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 895d855772706ebef1b75f8f646060b34266e027c77d6d4ea1d81ade19d3258b
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] running `Command { std: "docker" "start" "-a" "895d855772706ebef1b75f8f646060b34266e027c77d6d4ea1d81ade19d3258b", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "895d855772706ebef1b75f8f646060b34266e027c77d6d4ea1d81ade19d3258b", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "895d855772706ebef1b75f8f646060b34266e027c77d6d4ea1d81ade19d3258b", kill_on_drop: false }`
[INFO] [stdout] 895d855772706ebef1b75f8f646060b34266e027c77d6d4ea1d81ade19d3258b
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:d92eaeed33fa75130ca1ee6c8a01d1ffb62bac859dfdfb3450e3e5d1c0146529" "/opt/rustwide/cargo-home/bin/cargo" "+1.47.0" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] d72454bbd8e576b754b33a168da27b9fa70dea30fbe26251e0a2c0df2235fada
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] running `Command { std: "docker" "start" "-a" "d72454bbd8e576b754b33a168da27b9fa70dea30fbe26251e0a2c0df2235fada", kill_on_drop: false }`
[INFO] [stderr]    Compiling libc v0.2.79
[INFO] [stderr]    Compiling lazy_static v1.4.0
[INFO] [stderr]    Compiling memchr v2.3.3
[INFO] [stderr]    Compiling glob v0.2.11
[INFO] [stderr]    Compiling log v0.4.11
[INFO] [stderr]    Compiling proc-macro2 v1.0.24
[INFO] [stderr]    Compiling regex v0.2.11
[INFO] [stderr]    Compiling ucd-util v0.1.8
[INFO] [stderr]    Compiling libloading v0.4.3
[INFO] [stderr]    Compiling bitflags v1.2.1
[INFO] [stderr]    Compiling unicode-xid v0.2.1
[INFO] [stderr]    Compiling unicode-xid v0.1.0
[INFO] [stderr]    Compiling utf8-ranges v1.0.4
[INFO] [stderr]    Compiling unicode-width v0.1.8
[INFO] [stderr]    Compiling vec_map v0.8.2
[INFO] [stderr]    Compiling strsim v0.8.0
[INFO] [stderr]    Compiling ansi_term v0.11.0
[INFO] [stderr]    Compiling autocfg v1.0.1
[INFO] [stderr]    Compiling bindgen v0.32.3
[INFO] [stderr]    Compiling syn v1.0.44
[INFO] [stderr]    Compiling cc v1.0.61
[INFO] [stderr]    Compiling peeking_take_while v0.1.2
[INFO] [stderr]    Compiling adler v0.2.3
[INFO] [stderr]    Compiling gimli v0.22.0
[INFO] [stderr]    Compiling failure_derive v0.1.8
[INFO] [stderr]    Compiling cfg-if v1.0.0
[INFO] [stderr]    Compiling rustc-demangle v0.1.17
[INFO] [stderr]    Compiling object v0.21.1
[INFO] [stderr]    Compiling either v1.6.1
[INFO] [stderr]    Compiling thread_local v0.3.6
[INFO] [stderr]    Compiling proc-macro2 v0.2.3
[INFO] [stderr]    Compiling textwrap v0.11.0
[INFO] [stderr]    Compiling regex-syntax v0.5.6
[INFO] [stderr]    Compiling itertools v0.8.2
[INFO] [stderr]    Compiling miniz_oxide v0.4.3
[INFO] [stderr]    Compiling generic-array v0.12.3
[INFO] [stderr]    Compiling cmake v0.1.44
[INFO] [stderr]    Compiling log v0.3.9
[INFO] [stderr]    Compiling quote v0.4.2
[INFO] [stderr]    Compiling clang-sys v0.21.2
[INFO] [stderr]    Compiling aho-corasick v0.6.10
[INFO] [stderr]    Compiling quote v1.0.7
[INFO] [stderr]    Compiling memchr v1.0.2
[INFO] [stderr]    Compiling atty v0.2.14
[INFO] [stderr]    Compiling which v1.0.5
[INFO] [stderr]    Compiling clap v2.33.3
[INFO] [stderr]    Compiling nom v3.2.1
[INFO] [stderr]    Compiling cexpr v0.2.3
[INFO] [stderr]    Compiling addr2line v0.13.0
[INFO] [stderr]    Compiling backtrace v0.3.53
[INFO] [stderr]    Compiling env_logger v0.4.3
[INFO] [stderr]    Compiling synstructure v0.12.4
[INFO] [stderr]    Compiling failure v0.1.8
[INFO] [stderr]    Compiling flann-sys v0.1.0
[INFO] [stderr] error: failed to run custom build command for `flann-sys v0.1.0`
[INFO] [stderr] 
[INFO] [stderr] Caused by:
[INFO] [stderr]   process didn't exit successfully: `/opt/rustwide/target/debug/build/flann-sys-6a20b132998784dc/build-script-build` (exit code: 101)
[INFO] [stderr]   --- stdout
[INFO] [stderr]   cargo:rustc-link-lib=gomp
[INFO] [stderr]   cargo:rustc-link-lib=stdc++
[INFO] [stderr]   running: "cmake" "/opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/flann-sys-0.1.0/flann" "-DBUILD_EXAMPLES=OFF" "-DBUILD_TESTS=OFF" "-DBUILD_DOC=OFF" "-DBUILD_PYTHON_BINDINGS=OFF" "-DBUILD_MATLAB_BINDINGS=OFF" "-DUSE_OPENMP=ON" "-DCMAKE_INSTALL_PREFIX=/opt/rustwide/target/debug/build/flann-sys-b1ec87652b59c73c/out" "-DCMAKE_C_FLAGS= -ffunction-sections -fdata-sections -fPIC -m64" "-DCMAKE_C_COMPILER=/usr/bin/cc" "-DCMAKE_CXX_FLAGS= -ffunction-sections -fdata-sections -fPIC -m64" "-DCMAKE_CXX_COMPILER=/usr/bin/c++" "-DCMAKE_ASM_FLAGS= -ffunction-sections -fdata-sections -fPIC -m64" "-DCMAKE_ASM_COMPILER=/usr/bin/cc" "-DCMAKE_BUILD_TYPE=Debug"
[INFO] [stderr]   -- The C compiler identification is GNU 9.3.0
[INFO] [stderr]   -- The CXX compiler identification is GNU 9.3.0
[INFO] [stderr]   -- Check for working C compiler: /usr/bin/cc
[INFO] [stderr]   -- Check for working C compiler: /usr/bin/cc -- works
[INFO] [stderr]   -- Detecting C compiler ABI info
[INFO] [stderr]   -- Detecting C compiler ABI info - done
[INFO] [stderr]   -- Detecting C compile features
[INFO] [stderr]   -- Detecting C compile features - done
[INFO] [stderr]   -- Check for working CXX compiler: /usr/bin/c++
[INFO] [stderr]   -- Check for working CXX compiler: /usr/bin/c++ -- works
[INFO] [stderr]   -- Detecting CXX compiler ABI info
[INFO] [stderr]   -- Detecting CXX compiler ABI info - done
[INFO] [stderr]   -- Detecting CXX compile features
[INFO] [stderr]   -- Detecting CXX compile features - done
[INFO] [stderr]   -- Found PythonInterp: /usr/bin/python (found version "2.7.18") 
[INFO] [stderr]   -- Could NOT find HDF5 (missing: HDF5_LIBRARIES HDF5_INCLUDE_DIRS) (found version "")
[INFO] [stderr]   -- Could NOT find GTest (missing: GTEST_LIBRARY GTEST_INCLUDE_DIR GTEST_MAIN_LIBRARY) 
[INFO] [stderr]   -- Found OpenMP_C: -fopenmp (found version "4.5") 
[INFO] [stderr]   -- Found OpenMP_CXX: -fopenmp (found version "4.5") 
[INFO] [stderr]   -- Found OpenMP: TRUE (found version "4.5")  
[INFO] [stderr]   -- Install prefix: /opt/rustwide/target/debug/build/flann-sys-b1ec87652b59c73c/out
[INFO] [stderr]   -- Build type: Debug
[INFO] [stderr]   -- Building C bindings: ON
[INFO] [stderr]   -- Building examples: OFF
[INFO] [stderr]   -- Building tests: OFF
[INFO] [stderr]   -- Building documentation: OFF
[INFO] [stderr]   -- Building python bindings: OFF
[INFO] [stderr]   -- Building matlab bindings: OFF
[INFO] [stderr]   -- Building CUDA library: OFF
[INFO] [stderr]   -- Using OpenMP support: ON
[INFO] [stderr]   -- Using MPI support: OFF
[INFO] [stderr]   -- Configuring incomplete, errors occurred!
[INFO] [stderr]   See also "/opt/rustwide/target/debug/build/flann-sys-b1ec87652b59c73c/out/build/CMakeFiles/CMakeOutput.log".
[INFO] [stderr] 
[INFO] [stderr]   --- stderr
[INFO] [stderr]   CMake Warning at CMakeLists.txt:78 (message):
[INFO] [stderr]     hdf5 library not found, some tests will not be run
[INFO] [stderr] 
[INFO] [stderr] 
[INFO] [stderr]   CMake Warning at CMakeLists.txt:117 (message):
[INFO] [stderr]     gtest library not found, some tests will not be run
[INFO] [stderr] 
[INFO] [stderr] 
[INFO] [stderr]   CMake Error: Could not open file for write in copy operation /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/flann-sys-0.1.0/flann/src/cpp/flann/config.h.tmp
[INFO] [stderr]   CMake Error: : System Error: Read-only file system
[INFO] [stderr]   CMake Error at src/cpp/CMakeLists.txt:5 (configure_file):
[INFO] [stderr]     configure_file Problem configuring file
[INFO] [stderr] 
[INFO] [stderr] 
[INFO] [stderr]   thread 'main' panicked at '
[INFO] [stderr]   command did not execute successfully, got: exit code: 1
[INFO] [stderr] 
[INFO] [stderr]   build script failed, must exit now', /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/cmake-0.1.44/src/lib.rs:885:5
[INFO] [stderr]   stack backtrace:
[INFO] [stderr]      0:     0x55fbea3c24f0 - std::backtrace_rs::backtrace::libunwind::trace::h577ea05e9ca4629a
[INFO] [stderr]                                  at /rustc/18bf6b4f01a6feaf7259ba7cdae58031af1b7b39/library/std/src/../../backtrace/src/backtrace/libunwind.rs:96
[INFO] [stderr]      1:     0x55fbea3c24f0 - std::backtrace_rs::backtrace::trace_unsynchronized::h50b9b72b84c7dd56
[INFO] [stderr]                                  at /rustc/18bf6b4f01a6feaf7259ba7cdae58031af1b7b39/library/std/src/../../backtrace/src/backtrace/mod.rs:66
[INFO] [stderr]      2:     0x55fbea3c24f0 - std::sys_common::backtrace::_print_fmt::h6541cf9823837fac
[INFO] [stderr]                                  at /rustc/18bf6b4f01a6feaf7259ba7cdae58031af1b7b39/library/std/src/sys_common/backtrace.rs:79
[INFO] [stderr]      3:     0x55fbea3c24f0 - <std::sys_common::backtrace::_print::DisplayBacktrace as core::fmt::Display>::fmt::hf64fbff071026df5
[INFO] [stderr]                                  at /rustc/18bf6b4f01a6feaf7259ba7cdae58031af1b7b39/library/std/src/sys_common/backtrace.rs:58
[INFO] [stderr]      4:     0x55fbea3e8a0c - core::fmt::write::h9ddafa4860d8adff
[INFO] [stderr]                                  at /rustc/18bf6b4f01a6feaf7259ba7cdae58031af1b7b39/library/core/src/fmt/mod.rs:1082
[INFO] [stderr]      5:     0x55fbea3be9c7 - std::io::Write::write_fmt::h1d2ee292d2b65481
[INFO] [stderr]                                  at /rustc/18bf6b4f01a6feaf7259ba7cdae58031af1b7b39/library/std/src/io/mod.rs:1514
[INFO] [stderr]      6:     0x55fbea3c4e60 - std::sys_common::backtrace::_print::ha25f9ff5080d886d
[INFO] [stderr]                                  at /rustc/18bf6b4f01a6feaf7259ba7cdae58031af1b7b39/library/std/src/sys_common/backtrace.rs:61
[INFO] [stderr]      7:     0x55fbea3c4e60 - std::sys_common::backtrace::print::h213e8aa8dc5405c0
[INFO] [stderr]                                  at /rustc/18bf6b4f01a6feaf7259ba7cdae58031af1b7b39/library/std/src/sys_common/backtrace.rs:48
[INFO] [stderr]      8:     0x55fbea3c4e60 - std::panicking::default_hook::{{closure}}::h6482fae49ef9d963
[INFO] [stderr]                                  at /rustc/18bf6b4f01a6feaf7259ba7cdae58031af1b7b39/library/std/src/panicking.rs:200
[INFO] [stderr]      9:     0x55fbea3c4bac - std::panicking::default_hook::he30ad7589e0970f9
[INFO] [stderr]                                  at /rustc/18bf6b4f01a6feaf7259ba7cdae58031af1b7b39/library/std/src/panicking.rs:219
[INFO] [stderr]     10:     0x55fbea3c54c3 - std::panicking::rust_panic_with_hook::haa1ed36ada4ffb03
[INFO] [stderr]                                  at /rustc/18bf6b4f01a6feaf7259ba7cdae58031af1b7b39/library/std/src/panicking.rs:569
[INFO] [stderr]     11:     0x55fbea3c5099 - std::panicking::begin_panic_handler::{{closure}}::h7001af1bb21aeaeb
[INFO] [stderr]                                  at /rustc/18bf6b4f01a6feaf7259ba7cdae58031af1b7b39/library/std/src/panicking.rs:476
[INFO] [stderr]     12:     0x55fbea3c297c - std::sys_common::backtrace::__rust_end_short_backtrace::h39910f557f5f2367
[INFO] [stderr]                                  at /rustc/18bf6b4f01a6feaf7259ba7cdae58031af1b7b39/library/std/src/sys_common/backtrace.rs:153
[INFO] [stderr]     13:     0x55fbea3c5059 - rust_begin_unwind
[INFO] [stderr]                                  at /rustc/18bf6b4f01a6feaf7259ba7cdae58031af1b7b39/library/std/src/panicking.rs:475
[INFO] [stderr]     14:     0x55fbea3c500b - std::panicking::begin_panic_fmt::hc1b1320af38b7e12
[INFO] [stderr]                                  at /rustc/18bf6b4f01a6feaf7259ba7cdae58031af1b7b39/library/std/src/panicking.rs:429
[INFO] [stderr]     15:     0x55fbe9e8c447 - cmake::fail::ha4b4d14b290898bf
[INFO] [stderr]                                  at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/cmake-0.1.44/src/lib.rs:885
[INFO] [stderr]     16:     0x55fbe9e8bd8e - cmake::run::he1fbc7cabee0b6a9
[INFO] [stderr]                                  at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/cmake-0.1.44/src/lib.rs:863
[INFO] [stderr]     17:     0x55fbe9e877c0 - cmake::Config::build::h046e6a30bf3569ce
[INFO] [stderr]                                  at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/cmake-0.1.44/src/lib.rs:698
[INFO] [stderr]     18:     0x55fbe9e82410 - build_script_build::main::hb5dc9a933e2f7dd1
[INFO] [stderr]                                  at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/flann-sys-0.1.0/build.rs:30
[INFO] [stderr]     19:     0x55fbe9e82e8b - core::ops::function::FnOnce::call_once::h2b7a16b32f37251b
[INFO] [stderr]                                  at /rustc/18bf6b4f01a6feaf7259ba7cdae58031af1b7b39/library/core/src/ops/function.rs:227
[INFO] [stderr]     20:     0x55fbe9e82cfe - std::sys_common::backtrace::__rust_begin_short_backtrace::h80341cedbb1fbf1c
[INFO] [stderr]                                  at /rustc/18bf6b4f01a6feaf7259ba7cdae58031af1b7b39/library/std/src/sys_common/backtrace.rs:137
[INFO] [stderr]     21:     0x55fbe9e84951 - std::rt::lang_start::{{closure}}::hcc0ade00f3fa0104
[INFO] [stderr]                                  at /rustc/18bf6b4f01a6feaf7259ba7cdae58031af1b7b39/library/std/src/rt.rs:66
[INFO] [stderr]     22:     0x55fbea3c58c1 - core::ops::function::impls::<impl core::ops::function::FnOnce<A> for &F>::call_once::h6a3209f124be2235
[INFO] [stderr]                                  at /rustc/18bf6b4f01a6feaf7259ba7cdae58031af1b7b39/library/core/src/ops/function.rs:259
[INFO] [stderr]     23:     0x55fbea3c58c1 - std::panicking::try::do_call::h88ce358792b64df0
[INFO] [stderr]                                  at /rustc/18bf6b4f01a6feaf7259ba7cdae58031af1b7b39/library/std/src/panicking.rs:373
[INFO] [stderr]     24:     0x55fbea3c58c1 - std::panicking::try::h6311c259678e50fc
[INFO] [stderr]                                  at /rustc/18bf6b4f01a6feaf7259ba7cdae58031af1b7b39/library/std/src/panicking.rs:337
[INFO] [stderr]     25:     0x55fbea3c58c1 - std::panic::catch_unwind::h56c5716807d659a1
[INFO] [stderr]                                  at /rustc/18bf6b4f01a6feaf7259ba7cdae58031af1b7b39/library/std/src/panic.rs:379
[INFO] [stderr]     26:     0x55fbea3c58c1 - std::rt::lang_start_internal::h73711f37ecfcb277
[INFO] [stderr]                                  at /rustc/18bf6b4f01a6feaf7259ba7cdae58031af1b7b39/library/std/src/rt.rs:51
[INFO] [stderr]     27:     0x55fbe9e84927 - std::rt::lang_start::h40f72c8e299f09ce
[INFO] [stderr]                                  at /rustc/18bf6b4f01a6feaf7259ba7cdae58031af1b7b39/library/std/src/rt.rs:65
[INFO] [stderr]     28:     0x55fbe9e8281a - main
[INFO] [stderr]     29:     0x7f6d175200b3 - __libc_start_main
[INFO] [stderr]     30:     0x55fbe9e820ce - _start
[INFO] [stderr]     31:                0x0 - <unknown>
[INFO] running `Command { std: "docker" "inspect" "d72454bbd8e576b754b33a168da27b9fa70dea30fbe26251e0a2c0df2235fada", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "d72454bbd8e576b754b33a168da27b9fa70dea30fbe26251e0a2c0df2235fada", kill_on_drop: false }`
[INFO] [stdout] d72454bbd8e576b754b33a168da27b9fa70dea30fbe26251e0a2c0df2235fada
