[INFO] cloning repository https://github.com/10XGenomics/bamtofastq
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/10XGenomics/bamtofastq" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2F10XGenomics%2Fbamtofastq", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2F10XGenomics%2Fbamtofastq'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] 6ecf67d596c27fb04ce1348aa78396caafab393f
[INFO] testing 10XGenomics/bamtofastq against beta-2020-10-09 for beta-1.48-1
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2F10XGenomics%2Fbamtofastq" "/workspace/builds/worker-9/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-9/source'...
[INFO] [stderr] done.
[INFO] validating manifest of git repo https://github.com/10XGenomics/bamtofastq on toolchain beta-2020-10-09
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+beta-2020-10-09" "read-manifest" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] started tweaking git repo https://github.com/10XGenomics/bamtofastq
[INFO] finished tweaking git repo https://github.com/10XGenomics/bamtofastq
[INFO] tweaked toml for git repo https://github.com/10XGenomics/bamtofastq written to /workspace/builds/worker-9/source/Cargo.toml
[INFO] crate git repo https://github.com/10XGenomics/bamtofastq already has a lockfile, it will not be regenerated
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+beta-2020-10-09" "fetch" "--locked" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Updating git repository `https://github.com/10XGenomics/rust-shardio.git`
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded ordered-float v0.3.0
[INFO] [stderr]   Downloaded fs-utils v1.1.4
[INFO] [stderr]   Downloaded bio-types v0.6.0
[INFO] [stderr]   Downloaded snafu v0.6.0
[INFO] [stderr]   Downloaded lz4-sys v1.9.2
[INFO] [stderr]   Downloaded rust-htslib v0.30.0
[INFO] [stderr]   Downloaded hts-sys v1.10.2
[INFO] [stderr]   Downloaded curl-sys v0.4.31+curl-7.70.0
[INFO] [stderr]   Downloaded lz4 v1.23.2
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-9/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-9/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:d92eaeed33fa75130ca1ee6c8a01d1ffb62bac859dfdfb3450e3e5d1c0146529" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2020-10-09" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 38f51195ca7af9ab9c6406bdc53ba77fa23c805a23e67524304ba23b68502ed7
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] running `Command { std: "docker" "start" "-a" "38f51195ca7af9ab9c6406bdc53ba77fa23c805a23e67524304ba23b68502ed7", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "38f51195ca7af9ab9c6406bdc53ba77fa23c805a23e67524304ba23b68502ed7", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "38f51195ca7af9ab9c6406bdc53ba77fa23c805a23e67524304ba23b68502ed7", kill_on_drop: false }`
[INFO] [stdout] 38f51195ca7af9ab9c6406bdc53ba77fa23c805a23e67524304ba23b68502ed7
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-9/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-9/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:d92eaeed33fa75130ca1ee6c8a01d1ffb62bac859dfdfb3450e3e5d1c0146529" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2020-10-09" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] [stdout] 172f9ac4c63f1d318c8bc895d3cb5515d5106aa8ceaa3ef2230840db25d91cf2
[INFO] running `Command { std: "docker" "start" "-a" "172f9ac4c63f1d318c8bc895d3cb5515d5106aa8ceaa3ef2230840db25d91cf2", kill_on_drop: false }`
[INFO] [stderr]    Compiling syn v1.0.39
[INFO] [stderr]    Compiling serde_derive v1.0.113
[INFO] [stderr]    Compiling serde v1.0.113
[INFO] [stderr]    Compiling glob v0.3.0
[INFO] [stderr]    Compiling bindgen v0.53.3
[INFO] [stderr]    Compiling peeking_take_while v0.1.2
[INFO] [stderr]    Compiling shlex v0.1.1
[INFO] [stderr]    Compiling rustc-hash v1.1.0
[INFO] [stderr]    Compiling doc-comment v0.3.3
[INFO] [stderr]    Compiling either v1.5.3
[INFO] [stderr]    Compiling void v1.0.2
[INFO] [stderr]    Compiling ieee754 v0.2.6
[INFO] [stderr]    Compiling custom_derive v0.1.7
[INFO] [stderr]    Compiling strsim v0.9.3
[INFO] [stderr]    Compiling min-max-heap v1.3.0
[INFO] [stderr]    Compiling linear-map v1.2.0
[INFO] [stderr]    Compiling libz-sys v1.0.25
[INFO] [stderr]    Compiling libloading v0.5.2
[INFO] [stderr]    Compiling openssl-sys v0.9.58
[INFO] [stderr]    Compiling curl-sys v0.4.31+curl-7.70.0
[INFO] [stderr]    Compiling lzma-sys v0.1.16
[INFO] [stderr]    Compiling bzip2-sys v0.1.9+1.0.8
[INFO] [stderr]    Compiling crossbeam-utils v0.7.2
[INFO] [stderr]    Compiling num-traits v0.2.12
[INFO] [stderr]    Compiling lz4-sys v1.9.2
[INFO] [stderr]    Compiling nom v5.1.2
[INFO] [stderr]    Compiling fs-utils v1.1.4
[INFO] [stderr]    Compiling unreachable v0.1.1
[INFO] [stderr]    Compiling itertools v0.8.2
[INFO] [stderr]    Compiling newtype_derive v0.1.6
[INFO] [stderr]    Compiling backtrace v0.3.49
[INFO] [stderr]    Compiling rand v0.4.6
[INFO] [stderr]    Compiling csv-core v0.1.10
[INFO] [stderr]    Compiling regex-automata v0.1.9
[INFO] [stderr]    Compiling os_type v2.2.0
[INFO] [stderr]    Compiling flate2 v1.0.14
[INFO] [stderr]    Compiling clang-sys v0.29.3
[INFO] [stderr]    Compiling uuid v0.8.1
[INFO] [stderr]    Compiling tempfile v3.1.0
[INFO] [stderr]    Compiling crossbeam-channel v0.4.2
[INFO] [stderr]    Compiling tempdir v0.3.7
[INFO] [stderr]    Compiling num-traits v0.1.43
[INFO] [stderr]    Compiling ordered-float v0.3.0
[INFO] [stderr]    Compiling cexpr v0.4.0
[INFO] [stderr]    Compiling synstructure v0.12.4
[INFO] [stderr]    Compiling failure_derive v0.1.8
[INFO] [stderr]    Compiling derive-new v0.5.8
[INFO] [stderr]    Compiling snafu-derive v0.6.8
[INFO] [stderr]    Compiling failure v0.1.8
[INFO] [stderr]    Compiling hts-sys v1.10.2
[INFO] [stderr]    Compiling snafu v0.6.0
[INFO] [stderr]    Compiling lz4 v1.23.2
[INFO] [stderr]    Compiling bio-types v0.6.0
[INFO] [stderr]    Compiling bstr v0.2.13
[INFO] [stderr]    Compiling bincode v1.2.1
[INFO] [stderr]    Compiling toml v0.5.6
[INFO] [stderr]    Compiling docopt v1.1.0
[INFO] [stderr]    Compiling serde_bytes v0.11.5
[INFO] [stderr]    Compiling shardio v0.7.1 (https://github.com/10XGenomics/rust-shardio.git#1f5f0e95)
[INFO] [stderr]    Compiling csv v1.1.3
[INFO] [stderr]    Compiling human-panic v1.0.3
[INFO] [stderr]    Compiling rust-htslib v0.30.0
[INFO] [stderr]    Compiling bamtofastq v1.3.2 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished dev [unoptimized + debuginfo] target(s) in 2m 19s
[INFO] running `Command { std: "docker" "inspect" "172f9ac4c63f1d318c8bc895d3cb5515d5106aa8ceaa3ef2230840db25d91cf2", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "172f9ac4c63f1d318c8bc895d3cb5515d5106aa8ceaa3ef2230840db25d91cf2", kill_on_drop: false }`
[INFO] [stdout] 172f9ac4c63f1d318c8bc895d3cb5515d5106aa8ceaa3ef2230840db25d91cf2
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-9/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-9/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:d92eaeed33fa75130ca1ee6c8a01d1ffb62bac859dfdfb3450e3e5d1c0146529" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2020-10-09" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }`
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] [stdout] fd57e3eb51454def62d1ddee7ef3e9f00413d65659fad07e3861fe421aa4d59d
[INFO] running `Command { std: "docker" "start" "-a" "fd57e3eb51454def62d1ddee7ef3e9f00413d65659fad07e3861fe421aa4d59d", kill_on_drop: false }`
[INFO] [stderr]    Compiling bamtofastq v1.3.2 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished test [unoptimized + debuginfo] target(s) in 9.59s
[INFO] running `Command { std: "docker" "inspect" "fd57e3eb51454def62d1ddee7ef3e9f00413d65659fad07e3861fe421aa4d59d", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "fd57e3eb51454def62d1ddee7ef3e9f00413d65659fad07e3861fe421aa4d59d", kill_on_drop: false }`
[INFO] [stdout] fd57e3eb51454def62d1ddee7ef3e9f00413d65659fad07e3861fe421aa4d59d
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-9/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-9/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:d92eaeed33fa75130ca1ee6c8a01d1ffb62bac859dfdfb3450e3e5d1c0146529" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2020-10-09" "test" "--frozen", kill_on_drop: false }`
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] [stdout] d74f7e474bdd16c1e43619d8b47459b0a2fae5487e86e5f6305fab2b4ef806ad
[INFO] running `Command { std: "docker" "start" "-a" "d74f7e474bdd16c1e43619d8b47459b0a2fae5487e86e5f6305fab2b4ef806ad", kill_on_drop: false }`
[INFO] [stderr]     Finished test [unoptimized + debuginfo] target(s) in 0.20s
[INFO] [stderr]      Running /opt/rustwide/target/debug/deps/bamtofastq-8295117fe6bf2c40
[INFO] [stdout] 
[INFO] [stdout] running 7 tests
[INFO] [stdout] test tests::test_lr21 ... ok
[INFO] [stdout] test tests::unpaired_record ... ok
[INFO] [stdout] test tests::wrong_header ... ok
[INFO] [stdout] test tests::bad_bam ... ok
[INFO] [stdout] test tests::test_cr12 ... ok
[INFO] [stdout] test tests::test_lr20 ... ok
[INFO] [stdout] test tests::test_cr12_v1 ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 7 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out
[INFO] [stdout] 
[INFO] running `Command { std: "docker" "inspect" "d74f7e474bdd16c1e43619d8b47459b0a2fae5487e86e5f6305fab2b4ef806ad", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "d74f7e474bdd16c1e43619d8b47459b0a2fae5487e86e5f6305fab2b4ef806ad", kill_on_drop: false }`
[INFO] [stdout] d74f7e474bdd16c1e43619d8b47459b0a2fae5487e86e5f6305fab2b4ef806ad