[INFO] fetching crate neuro 0.1.0... [INFO] documenting neuro-0.1.0 against beta-2020-08-29 for beta-1.47-rustdoc-1 [INFO] extracting crate neuro 0.1.0 into /workspace/builds/worker-4/source [INFO] validating manifest of crates.io crate neuro 0.1.0 on toolchain beta-2020-08-29 [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+beta-2020-08-29" "read-manifest" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] started tweaking crates.io crate neuro 0.1.0 [INFO] finished tweaking crates.io crate neuro 0.1.0 [INFO] tweaked toml for crates.io crate neuro 0.1.0 written to /workspace/builds/worker-4/source/Cargo.toml [INFO] crate crates.io crate neuro 0.1.0 already has a lockfile, it will not be regenerated [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+beta-2020-08-29" "fetch" "--locked" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded bstr v0.2.11 [INFO] [stderr] Downloaded parking_lot_core v0.5.0 [INFO] [stderr] Downloaded clicolors-control v1.0.1 [INFO] [stderr] Downloaded hdf5-types v0.6.0 [INFO] [stderr] Downloaded lock_api v0.2.0 [INFO] [stderr] Downloaded console v0.9.2 [INFO] [stderr] Downloaded termios v0.3.1 [INFO] [stderr] Downloaded hdf5-sys v0.6.0 [INFO] [stderr] Downloaded parking_lot v0.8.0 [INFO] [stderr] Downloaded arrayfire v3.6.3 [INFO] [stderr] Downloaded hdf5 v0.6.0 [INFO] [stderr] Downloaded hdf5-derive v0.6.0 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:d92eaeed33fa75130ca1ee6c8a01d1ffb62bac859dfdfb3450e3e5d1c0146529" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2020-08-29" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] [stdout] 4fb75bc7eb353cc3c6c5ebf2973b78715c6641a425aabc9c14f858b8003c6658 [INFO] running `Command { std: "docker" "start" "-a" "4fb75bc7eb353cc3c6c5ebf2973b78715c6641a425aabc9c14f858b8003c6658", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "4fb75bc7eb353cc3c6c5ebf2973b78715c6641a425aabc9c14f858b8003c6658", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "4fb75bc7eb353cc3c6c5ebf2973b78715c6641a425aabc9c14f858b8003c6658", kill_on_drop: false }` [INFO] [stdout] 4fb75bc7eb353cc3c6c5ebf2973b78715c6641a425aabc9c14f858b8003c6658 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:d92eaeed33fa75130ca1ee6c8a01d1ffb62bac859dfdfb3450e3e5d1c0146529" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2020-08-29" "doc" "--frozen" "--no-deps" "--document-private-items" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 2e6481d34a2c3fa6a54bf0279aa30b0e8bff14d95977e0cf2a0a0abaf53ec458 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "2e6481d34a2c3fa6a54bf0279aa30b0e8bff14d95977e0cf2a0a0abaf53ec458", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Checking adler32 v1.0.4 [INFO] [stderr] Compiling itoa v0.4.5 [INFO] [stderr] Compiling ndarray v0.12.1 [INFO] [stderr] Checking ascii v0.9.3 [INFO] [stderr] Checking number_prefix v0.3.0 [INFO] [stderr] Checking bytemuck v1.2.0 [INFO] [stderr] Compiling num-integer v0.1.42 [INFO] [stderr] Compiling num-bigint v0.2.6 [INFO] [stderr] Compiling num-rational v0.2.3 [INFO] [stderr] Compiling num-iter v0.1.40 [INFO] [stderr] Checking itertools v0.7.11 [INFO] [stderr] Checking lock_api v0.2.0 [INFO] [stderr] Compiling libc v0.2.67 [INFO] [stderr] Compiling serde v1.0.104 [INFO] [stderr] Compiling ryu v1.0.2 [INFO] [stderr] Checking rand_os v0.1.3 [INFO] [stderr] Checking getrandom v0.1.14 [INFO] [stderr] Checking clicolors-control v1.0.1 [INFO] [stderr] Checking termios v0.3.1 [INFO] [stderr] Checking regex-automata v0.1.8 [INFO] [stderr] Compiling parking_lot_core v0.5.0 [INFO] [stderr] Compiling parking_lot v0.8.0 [INFO] [stderr] Compiling aho-corasick v0.7.9 [INFO] [stderr] Checking csv-core v0.1.10 [INFO] [stderr] Checking miniz_oxide v0.3.6 [INFO] [stderr] Checking inflate v0.4.5 [INFO] [stderr] Checking deflate v0.7.20 [INFO] [stderr] Checking num-complex v0.2.4 [INFO] [stderr] Checking regex v1.3.4 [INFO] [stderr] Checking rand_core v0.5.1 [INFO] [stderr] Checking rand v0.6.5 [INFO] [stderr] Checking hdf5-types v0.6.0 [INFO] [stderr] Compiling serde_derive v1.0.104 [INFO] [stderr] Compiling hdf5-derive v0.6.0 [INFO] [stderr] Checking rand_chacha v0.2.1 [INFO] [stderr] Checking tiff v0.4.0 [INFO] [stderr] Checking bstr v0.2.11 [INFO] [stderr] Checking jpeg-decoder v0.1.18 [INFO] [stderr] Checking rand v0.7.3 [INFO] [stderr] Checking png v0.15.3 [INFO] [stderr] Checking console v0.9.2 [INFO] [stderr] Checking indicatif v0.14.0 [INFO] [stderr] Checking csv v1.1.3 [INFO] [stderr] Checking num v0.2.1 [INFO] [stderr] Checking image v0.23.0 [INFO] [stderr] Compiling hdf5-sys v0.6.0 [INFO] [stderr] error: failed to run custom build command for `hdf5-sys v0.6.0` [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] process didn't exit successfully: `/opt/rustwide/target/debug/build/hdf5-sys-497fe8db93002a0d/build-script-build` (exit code: 101) [INFO] [stderr] --- stdout [INFO] [stderr] Attempting to find HDF5 via pkg-config... [INFO] [stderr] [INFO] [stderr] --- stderr [INFO] [stderr] thread 'main' panicked at 'Unable to locate HDF5 root directory and/or headers.', /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hdf5-sys-0.6.0/build.rs:527:13 [INFO] [stderr] stack backtrace: [INFO] [stderr] 0: 0x55986223e330 - std::backtrace_rs::backtrace::libunwind::trace::h9e3e6d9b3369e699 [INFO] [stderr] at /rustc/84b047bf64dfcfa12867781e9c23dfa4f2e6082c/library/std/src/../../backtrace/src/backtrace/libunwind.rs:96 [INFO] [stderr] 1: 0x55986223e330 - std::backtrace_rs::backtrace::trace_unsynchronized::he58aba3ac08ed12a [INFO] [stderr] at /rustc/84b047bf64dfcfa12867781e9c23dfa4f2e6082c/library/std/src/../../backtrace/src/backtrace/mod.rs:66 [INFO] [stderr] 2: 0x55986223e330 - std::sys_common::backtrace::_print_fmt::hbbbd4c92d537cef4 [INFO] [stderr] at /rustc/84b047bf64dfcfa12867781e9c23dfa4f2e6082c/library/std/src/sys_common/backtrace.rs:79 [INFO] [stderr] 3: 0x55986223e330 - ::fmt::h80c2ae080004cc83 [INFO] [stderr] at /rustc/84b047bf64dfcfa12867781e9c23dfa4f2e6082c/library/std/src/sys_common/backtrace.rs:58 [INFO] [stderr] 4: 0x55986225ceac - core::fmt::write::h0c11e16fd03fe660 [INFO] [stderr] at /rustc/84b047bf64dfcfa12867781e9c23dfa4f2e6082c/library/core/src/fmt/mod.rs:1082 [INFO] [stderr] 5: 0x55986223b3c7 - std::io::Write::write_fmt::h2e2072ff86131fcd [INFO] [stderr] at /rustc/84b047bf64dfcfa12867781e9c23dfa4f2e6082c/library/std/src/io/mod.rs:1514 [INFO] [stderr] 6: 0x559862240570 - std::sys_common::backtrace::_print::h165e6476adb4cb58 [INFO] [stderr] at /rustc/84b047bf64dfcfa12867781e9c23dfa4f2e6082c/library/std/src/sys_common/backtrace.rs:61 [INFO] [stderr] 7: 0x559862240570 - std::sys_common::backtrace::print::hbbfa32a92cd1fc34 [INFO] [stderr] at /rustc/84b047bf64dfcfa12867781e9c23dfa4f2e6082c/library/std/src/sys_common/backtrace.rs:48 [INFO] [stderr] 8: 0x559862240570 - std::panicking::default_hook::{{closure}}::h3a02067ca7f64068 [INFO] [stderr] at /rustc/84b047bf64dfcfa12867781e9c23dfa4f2e6082c/library/std/src/panicking.rs:200 [INFO] [stderr] 9: 0x5598622402bc - std::panicking::default_hook::ha3137d6f4e961fe2 [INFO] [stderr] at /rustc/84b047bf64dfcfa12867781e9c23dfa4f2e6082c/library/std/src/panicking.rs:219 [INFO] [stderr] 10: 0x559862240bd3 - std::panicking::rust_panic_with_hook::he6505c3b9d82db8b [INFO] [stderr] at /rustc/84b047bf64dfcfa12867781e9c23dfa4f2e6082c/library/std/src/panicking.rs:569 [INFO] [stderr] 11: 0x55986205106c - std::panicking::begin_panic::{{closure}}::hc18eb2aecdb355f5 [INFO] [stderr] at /rustc/84b047bf64dfcfa12867781e9c23dfa4f2e6082c/library/std/src/panicking.rs:498 [INFO] [stderr] 12: 0x55986204fb19 - std::sys_common::backtrace::__rust_end_short_backtrace::hf8742c25b31dd7cf [INFO] [stderr] at /rustc/84b047bf64dfcfa12867781e9c23dfa4f2e6082c/library/std/src/sys_common/backtrace.rs:153 [INFO] [stderr] 13: 0x559862050f97 - std::panicking::begin_panic::h6c1669f1cbdc7b0a [INFO] [stderr] at /rustc/84b047bf64dfcfa12867781e9c23dfa4f2e6082c/library/std/src/panicking.rs:497 [INFO] [stderr] 14: 0x5598620163ba - build_script_build::LibrarySearcher::try_locate_hdf5_library::h2fd6ceb26ac5dd4d [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hdf5-sys-0.6.0/build.rs:527 [INFO] [stderr] 15: 0x55986201776c - build_script_build::main::h3505247ba8412383 [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hdf5-sys-0.6.0/build.rs:605 [INFO] [stderr] 16: 0x55986201c1eb - core::ops::function::FnOnce::call_once::h25f6dac61d99bff9 [INFO] [stderr] at /rustc/84b047bf64dfcfa12867781e9c23dfa4f2e6082c/library/core/src/ops/function.rs:227 [INFO] [stderr] 17: 0x55986201aabe - std::sys_common::backtrace::__rust_begin_short_backtrace::h30a284f794333bae [INFO] [stderr] at /rustc/84b047bf64dfcfa12867781e9c23dfa4f2e6082c/library/std/src/sys_common/backtrace.rs:137 [INFO] [stderr] 18: 0x55986201d1f1 - std::rt::lang_start::{{closure}}::hca6bd5eda3df9ac0 [INFO] [stderr] at /rustc/84b047bf64dfcfa12867781e9c23dfa4f2e6082c/library/std/src/rt.rs:66 [INFO] [stderr] 19: 0x559862240fd1 - core::ops::function::impls:: for &F>::call_once::hdabbbe0d2c6ccde8 [INFO] [stderr] at /rustc/84b047bf64dfcfa12867781e9c23dfa4f2e6082c/library/core/src/ops/function.rs:259 [INFO] [stderr] 20: 0x559862240fd1 - std::panicking::try::do_call::h0c8c1cd19bf9d385 [INFO] [stderr] at /rustc/84b047bf64dfcfa12867781e9c23dfa4f2e6082c/library/std/src/panicking.rs:373 [INFO] [stderr] 21: 0x559862240fd1 - std::panicking::try::h357e78da017bc4a8 [INFO] [stderr] at /rustc/84b047bf64dfcfa12867781e9c23dfa4f2e6082c/library/std/src/panicking.rs:337 [INFO] [stderr] 22: 0x559862240fd1 - std::panic::catch_unwind::h72f31b36adf61841 [INFO] [stderr] at /rustc/84b047bf64dfcfa12867781e9c23dfa4f2e6082c/library/std/src/panic.rs:379 [INFO] [stderr] 23: 0x559862240fd1 - std::rt::lang_start_internal::h634502e153211333 [INFO] [stderr] at /rustc/84b047bf64dfcfa12867781e9c23dfa4f2e6082c/library/std/src/rt.rs:51 [INFO] [stderr] 24: 0x55986201d1c7 - std::rt::lang_start::haa5286c37a0f3d99 [INFO] [stderr] at /rustc/84b047bf64dfcfa12867781e9c23dfa4f2e6082c/library/std/src/rt.rs:65 [INFO] [stderr] 25: 0x5598620182ca - main [INFO] [stderr] 26: 0x7fca28c6a0b3 - __libc_start_main [INFO] [stderr] 27: 0x5598620120ce - _start [INFO] [stderr] 28: 0x0 - [INFO] [stderr] warning: build failed, waiting for other jobs to finish... [INFO] [stderr] error: build failed [INFO] running `Command { std: "docker" "inspect" "2e6481d34a2c3fa6a54bf0279aa30b0e8bff14d95977e0cf2a0a0abaf53ec458", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "2e6481d34a2c3fa6a54bf0279aa30b0e8bff14d95977e0cf2a0a0abaf53ec458", kill_on_drop: false }` [INFO] [stdout] 2e6481d34a2c3fa6a54bf0279aa30b0e8bff14d95977e0cf2a0a0abaf53ec458