[INFO] fetching crate netcdf-sys 0.3.2... [INFO] documenting netcdf-sys-0.3.2 against beta-2020-08-29 for beta-1.47-rustdoc-1 [INFO] extracting crate netcdf-sys 0.3.2 into /workspace/builds/worker-3/source [INFO] validating manifest of crates.io crate netcdf-sys 0.3.2 on toolchain beta-2020-08-29 [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+beta-2020-08-29" "read-manifest" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] started tweaking crates.io crate netcdf-sys 0.3.2 [INFO] finished tweaking crates.io crate netcdf-sys 0.3.2 [INFO] tweaked toml for crates.io crate netcdf-sys 0.3.2 written to /workspace/builds/worker-3/source/Cargo.toml [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+beta-2020-08-29" "generate-lockfile" "--manifest-path" "Cargo.toml" "-Zno-index-update", kill_on_drop: false }` [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+beta-2020-08-29" "fetch" "--locked" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded hdf5-sys v0.7.0 [INFO] [stderr] Downloaded hdf5-src v0.7.0 [INFO] [stderr] Downloaded netcdf-src v0.1.3 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:d92eaeed33fa75130ca1ee6c8a01d1ffb62bac859dfdfb3450e3e5d1c0146529" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2020-08-29" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 9b45a73d0003aaa07560a38c46517a946e52574d4d5a6b4755b8c9ca3d46d0b3 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "9b45a73d0003aaa07560a38c46517a946e52574d4d5a6b4755b8c9ca3d46d0b3", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "9b45a73d0003aaa07560a38c46517a946e52574d4d5a6b4755b8c9ca3d46d0b3", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "9b45a73d0003aaa07560a38c46517a946e52574d4d5a6b4755b8c9ca3d46d0b3", kill_on_drop: false }` [INFO] [stdout] 9b45a73d0003aaa07560a38c46517a946e52574d4d5a6b4755b8c9ca3d46d0b3 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:d92eaeed33fa75130ca1ee6c8a01d1ffb62bac859dfdfb3450e3e5d1c0146529" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2020-08-29" "doc" "--frozen" "--no-deps" "--document-private-items" "--message-format=json", kill_on_drop: false }` [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] [stdout] 6aed8f3f52b919d406cd428934f231892c9175a7f68719c17bd98f9d8a461604 [INFO] running `Command { std: "docker" "start" "-a" "6aed8f3f52b919d406cd428934f231892c9175a7f68719c17bd98f9d8a461604", kill_on_drop: false }` [INFO] [stderr] Compiling libloading v0.6.3 [INFO] [stderr] Compiling netcdf-sys v0.3.2 (/opt/rustwide/workdir) [INFO] [stderr] Compiling libz-sys v1.1.1 [INFO] [stderr] Compiling hdf5-sys v0.7.0 [INFO] [stderr] error: failed to run custom build command for `hdf5-sys v0.7.0` [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] process didn't exit successfully: `/opt/rustwide/target/debug/build/hdf5-sys-8a1a691078658619/build-script-build` (exit code: 101) [INFO] [stderr] --- stdout [INFO] [stderr] Attempting to find HDF5 via pkg-config... [INFO] [stderr] cargo:rerun-if-env-changed=HDF5_NO_PKG_CONFIG [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG [INFO] [stderr] cargo:rerun-if-env-changed=HDF5_STATIC [INFO] [stderr] cargo:rerun-if-env-changed=HDF5_DYNAMIC [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_ALL_STATIC [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_ALL_DYNAMIC [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_PATH_x86_64-unknown-linux-gnu [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_PATH_x86_64_unknown_linux_gnu [INFO] [stderr] cargo:rerun-if-env-changed=HOST_PKG_CONFIG_PATH [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_PATH [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR_x86_64-unknown-linux-gnu [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR_x86_64_unknown_linux_gnu [INFO] [stderr] cargo:rerun-if-env-changed=HOST_PKG_CONFIG_LIBDIR [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR_x86_64-unknown-linux-gnu [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR_x86_64_unknown_linux_gnu [INFO] [stderr] cargo:rerun-if-env-changed=HOST_PKG_CONFIG_SYSROOT_DIR [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR [INFO] [stderr] [INFO] [stderr] --- stderr [INFO] [stderr] thread 'main' panicked at 'Unable to locate HDF5 root directory and/or headers.', /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hdf5-sys-0.7.0/build.rs:549:13 [INFO] [stderr] stack backtrace: [INFO] [stderr] 0: 0x556f63d56d80 - std::backtrace_rs::backtrace::libunwind::trace::h9e3e6d9b3369e699 [INFO] [stderr] at /rustc/84b047bf64dfcfa12867781e9c23dfa4f2e6082c/library/std/src/../../backtrace/src/backtrace/libunwind.rs:96 [INFO] [stderr] 1: 0x556f63d56d80 - std::backtrace_rs::backtrace::trace_unsynchronized::he58aba3ac08ed12a [INFO] [stderr] at /rustc/84b047bf64dfcfa12867781e9c23dfa4f2e6082c/library/std/src/../../backtrace/src/backtrace/mod.rs:66 [INFO] [stderr] 2: 0x556f63d56d80 - std::sys_common::backtrace::_print_fmt::hbbbd4c92d537cef4 [INFO] [stderr] at /rustc/84b047bf64dfcfa12867781e9c23dfa4f2e6082c/library/std/src/sys_common/backtrace.rs:79 [INFO] [stderr] 3: 0x556f63d56d80 - ::fmt::h80c2ae080004cc83 [INFO] [stderr] at /rustc/84b047bf64dfcfa12867781e9c23dfa4f2e6082c/library/std/src/sys_common/backtrace.rs:58 [INFO] [stderr] 4: 0x556f63d759dc - core::fmt::write::h0c11e16fd03fe660 [INFO] [stderr] at /rustc/84b047bf64dfcfa12867781e9c23dfa4f2e6082c/library/core/src/fmt/mod.rs:1082 [INFO] [stderr] 5: 0x556f63d53e17 - std::io::Write::write_fmt::h2e2072ff86131fcd [INFO] [stderr] at /rustc/84b047bf64dfcfa12867781e9c23dfa4f2e6082c/library/std/src/io/mod.rs:1514 [INFO] [stderr] 6: 0x556f63d58fc0 - std::sys_common::backtrace::_print::h165e6476adb4cb58 [INFO] [stderr] at /rustc/84b047bf64dfcfa12867781e9c23dfa4f2e6082c/library/std/src/sys_common/backtrace.rs:61 [INFO] [stderr] 7: 0x556f63d58fc0 - std::sys_common::backtrace::print::hbbfa32a92cd1fc34 [INFO] [stderr] at /rustc/84b047bf64dfcfa12867781e9c23dfa4f2e6082c/library/std/src/sys_common/backtrace.rs:48 [INFO] [stderr] 8: 0x556f63d58fc0 - std::panicking::default_hook::{{closure}}::h3a02067ca7f64068 [INFO] [stderr] at /rustc/84b047bf64dfcfa12867781e9c23dfa4f2e6082c/library/std/src/panicking.rs:200 [INFO] [stderr] 9: 0x556f63d58d0c - std::panicking::default_hook::ha3137d6f4e961fe2 [INFO] [stderr] at /rustc/84b047bf64dfcfa12867781e9c23dfa4f2e6082c/library/std/src/panicking.rs:219 [INFO] [stderr] 10: 0x556f63d59623 - std::panicking::rust_panic_with_hook::he6505c3b9d82db8b [INFO] [stderr] at /rustc/84b047bf64dfcfa12867781e9c23dfa4f2e6082c/library/std/src/panicking.rs:569 [INFO] [stderr] 11: 0x556f63b59d7c - std::panicking::begin_panic::{{closure}}::hfe2016c841b9a778 [INFO] [stderr] at /rustc/84b047bf64dfcfa12867781e9c23dfa4f2e6082c/library/std/src/panicking.rs:498 [INFO] [stderr] 12: 0x556f63b46a69 - std::sys_common::backtrace::__rust_end_short_backtrace::h4657d1afbe92172a [INFO] [stderr] at /rustc/84b047bf64dfcfa12867781e9c23dfa4f2e6082c/library/std/src/sys_common/backtrace.rs:153 [INFO] [stderr] 13: 0x556f63b59ca7 - std::panicking::begin_panic::hc9f359f0ce838256 [INFO] [stderr] at /rustc/84b047bf64dfcfa12867781e9c23dfa4f2e6082c/library/std/src/panicking.rs:497 [INFO] [stderr] 14: 0x556f63b2b26a - build_script_build::LibrarySearcher::try_locate_hdf5_library::h6f183eb387a1b251 [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hdf5-sys-0.7.0/build.rs:549 [INFO] [stderr] 15: 0x556f63b2cbac - build_script_build::main::h04e15e35ac19c89c [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hdf5-sys-0.7.0/build.rs:647 [INFO] [stderr] 16: 0x556f63b33a2b - core::ops::function::FnOnce::call_once::h8794bb5e2be245a7 [INFO] [stderr] at /rustc/84b047bf64dfcfa12867781e9c23dfa4f2e6082c/library/core/src/ops/function.rs:227 [INFO] [stderr] 17: 0x556f63b3121e - std::sys_common::backtrace::__rust_begin_short_backtrace::h45c271b8f7d87258 [INFO] [stderr] at /rustc/84b047bf64dfcfa12867781e9c23dfa4f2e6082c/library/std/src/sys_common/backtrace.rs:137 [INFO] [stderr] 18: 0x556f63b33451 - std::rt::lang_start::{{closure}}::hac3d8e811633eb68 [INFO] [stderr] at /rustc/84b047bf64dfcfa12867781e9c23dfa4f2e6082c/library/std/src/rt.rs:66 [INFO] [stderr] 19: 0x556f63d59a21 - core::ops::function::impls:: for &F>::call_once::hdabbbe0d2c6ccde8 [INFO] [stderr] at /rustc/84b047bf64dfcfa12867781e9c23dfa4f2e6082c/library/core/src/ops/function.rs:259 [INFO] [stderr] 20: 0x556f63d59a21 - std::panicking::try::do_call::h0c8c1cd19bf9d385 [INFO] [stderr] at /rustc/84b047bf64dfcfa12867781e9c23dfa4f2e6082c/library/std/src/panicking.rs:373 [INFO] [stderr] 21: 0x556f63d59a21 - std::panicking::try::h357e78da017bc4a8 [INFO] [stderr] at /rustc/84b047bf64dfcfa12867781e9c23dfa4f2e6082c/library/std/src/panicking.rs:337 [INFO] [stderr] 22: 0x556f63d59a21 - std::panic::catch_unwind::h72f31b36adf61841 [INFO] [stderr] at /rustc/84b047bf64dfcfa12867781e9c23dfa4f2e6082c/library/std/src/panic.rs:379 [INFO] [stderr] 23: 0x556f63d59a21 - std::rt::lang_start_internal::h634502e153211333 [INFO] [stderr] at /rustc/84b047bf64dfcfa12867781e9c23dfa4f2e6082c/library/std/src/rt.rs:51 [INFO] [stderr] 24: 0x556f63b33427 - std::rt::lang_start::hc6c9a67cd2cb1c52 [INFO] [stderr] at /rustc/84b047bf64dfcfa12867781e9c23dfa4f2e6082c/library/std/src/rt.rs:65 [INFO] [stderr] 25: 0x556f63b2e2da - main [INFO] [stderr] 26: 0x7f7a1e8510b3 - __libc_start_main [INFO] [stderr] 27: 0x556f63b260be - _start [INFO] [stderr] 28: 0x0 - [INFO] running `Command { std: "docker" "inspect" "6aed8f3f52b919d406cd428934f231892c9175a7f68719c17bd98f9d8a461604", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "6aed8f3f52b919d406cd428934f231892c9175a7f68719c17bd98f9d8a461604", kill_on_drop: false }` [INFO] [stdout] 6aed8f3f52b919d406cd428934f231892c9175a7f68719c17bd98f9d8a461604