[INFO] fetching crate hdf5-rs 0.2.0...
[INFO] documenting hdf5-rs-0.2.0 against beta-2020-08-29 for beta-1.47-rustdoc-1
[INFO] extracting crate hdf5-rs 0.2.0 into /workspace/builds/worker-2/source
[INFO] validating manifest of crates.io crate hdf5-rs 0.2.0 on toolchain beta-2020-08-29
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+beta-2020-08-29" "read-manifest" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] started tweaking crates.io crate hdf5-rs 0.2.0
[INFO] removed path dependency libhdf5-lib from crates.io crate hdf5-rs 0.2.0
[INFO] removed path dependency libhdf5-sys from crates.io crate hdf5-rs 0.2.0
[INFO] removed path dependency remutex from crates.io crate hdf5-rs 0.2.0
[INFO] removed path dependency libhdf5-lib from crates.io crate hdf5-rs 0.2.0
[INFO] finished tweaking crates.io crate hdf5-rs 0.2.0
[INFO] tweaked toml for crates.io crate hdf5-rs 0.2.0 written to /workspace/builds/worker-2/source/Cargo.toml
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+beta-2020-08-29" "generate-lockfile" "--manifest-path" "Cargo.toml" "-Zno-index-update", kill_on_drop: false }`
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+beta-2020-08-29" "fetch" "--locked" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded remutex v0.1.1
[INFO] [stderr]   Downloaded libhdf5-sys v0.2.0
[INFO] [stderr]   Downloaded libhdf5-lib v0.2.0
[INFO] [stderr]   Downloaded clippy v0.0.63
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:d92eaeed33fa75130ca1ee6c8a01d1ffb62bac859dfdfb3450e3e5d1c0146529" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2020-08-29" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 39df41a0f0aaf908d8aa3570d4340245265b0fb9a5c28ce7011e7ca65dedf841
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] running `Command { std: "docker" "start" "-a" "39df41a0f0aaf908d8aa3570d4340245265b0fb9a5c28ce7011e7ca65dedf841", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "39df41a0f0aaf908d8aa3570d4340245265b0fb9a5c28ce7011e7ca65dedf841", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "39df41a0f0aaf908d8aa3570d4340245265b0fb9a5c28ce7011e7ca65dedf841", kill_on_drop: false }`
[INFO] [stdout] 39df41a0f0aaf908d8aa3570d4340245265b0fb9a5c28ce7011e7ca65dedf841
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:d92eaeed33fa75130ca1ee6c8a01d1ffb62bac859dfdfb3450e3e5d1c0146529" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2020-08-29" "doc" "--frozen" "--no-deps" "--document-private-items" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 64cec24dbdb8de35bf37f0b5cd7463ebb09b241d944a7c15c2522acd8d466600
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] running `Command { std: "docker" "start" "-a" "64cec24dbdb8de35bf37f0b5cd7463ebb09b241d944a7c15c2522acd8d466600", kill_on_drop: false }`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]    Compiling libhdf5-lib v0.2.0
[INFO] [stderr]     Checking remutex v0.1.1
[INFO] [stderr]    Compiling libhdf5-sys v0.2.0
[INFO] [stderr]    Compiling hdf5-rs v0.2.0 (/opt/rustwide/workdir)
[INFO] [stdout] error: linking with `cc` failed: exit code: 1
[INFO] [stdout]   |
[INFO] [stdout]   = note: "cc" "-Wl,--as-needed" "-Wl,-z,noexecstack" "-m64" "-Wl,--eh-frame-hdr" "-L" "/opt/rustwide/rustup-home/toolchains/beta-2020-08-29-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib" "/opt/rustwide/target/debug/build/libhdf5-sys-c0b1352e34bd6219/build_script_build-c0b1352e34bd6219.build_script_build.3wqmt7qn-cgu.0.rcgu.o" "/opt/rustwide/target/debug/build/libhdf5-sys-c0b1352e34bd6219/build_script_build-c0b1352e34bd6219.build_script_build.3wqmt7qn-cgu.1.rcgu.o" "/opt/rustwide/target/debug/build/libhdf5-sys-c0b1352e34bd6219/build_script_build-c0b1352e34bd6219.build_script_build.3wqmt7qn-cgu.2.rcgu.o" "/opt/rustwide/target/debug/build/libhdf5-sys-c0b1352e34bd6219/build_script_build-c0b1352e34bd6219.build_script_build.3wqmt7qn-cgu.3.rcgu.o" "/opt/rustwide/target/debug/build/libhdf5-sys-c0b1352e34bd6219/build_script_build-c0b1352e34bd6219.build_script_build.3wqmt7qn-cgu.4.rcgu.o" "/opt/rustwide/target/debug/build/libhdf5-sys-c0b1352e34bd6219/build_script_build-c0b1352e34bd6219.build_script_build.3wqmt7qn-cgu.5.rcgu.o" "-o" "/opt/rustwide/target/debug/build/libhdf5-sys-c0b1352e34bd6219/build_script_build-c0b1352e34bd6219" "/opt/rustwide/target/debug/build/libhdf5-sys-c0b1352e34bd6219/build_script_build-c0b1352e34bd6219.3j2mjn3svxto6e38.rcgu.o" "-Wl,--gc-sections" "-pie" "-Wl,-zrelro" "-Wl,-znow" "-nodefaultlibs" "-L" "/opt/rustwide/target/debug/deps" "-L" "/opt/rustwide/rustup-home/toolchains/beta-2020-08-29-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib" "-Wl,-Bstatic" "/opt/rustwide/target/debug/deps/liblibhdf5_lib-1c232c6a88dfad05.rlib" "-Wl,--start-group" "/opt/rustwide/rustup-home/toolchains/beta-2020-08-29-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/libstd-b5ad74bd84224810.rlib" "/opt/rustwide/rustup-home/toolchains/beta-2020-08-29-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/libpanic_unwind-26a1f571fc41e545.rlib" "/opt/rustwide/rustup-home/toolchains/beta-2020-08-29-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/libminiz_oxide-f5a491ac3f4cef4e.rlib" "/opt/rustwide/rustup-home/toolchains/beta-2020-08-29-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/libadler-c201d25add2f427a.rlib" "/opt/rustwide/rustup-home/toolchains/beta-2020-08-29-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/libobject-24b3eaf3b9f39a4d.rlib" "/opt/rustwide/rustup-home/toolchains/beta-2020-08-29-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/libaddr2line-4755f99fa32ed4f2.rlib" "/opt/rustwide/rustup-home/toolchains/beta-2020-08-29-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/libgimli-0e694316d0b3e45e.rlib" "/opt/rustwide/rustup-home/toolchains/beta-2020-08-29-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/librustc_demangle-ea5311801a274ea7.rlib" "/opt/rustwide/rustup-home/toolchains/beta-2020-08-29-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/libhashbrown-c40b74d63d88a7bb.rlib" "/opt/rustwide/rustup-home/toolchains/beta-2020-08-29-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/librustc_std_workspace_alloc-07451f79951e780d.rlib" "/opt/rustwide/rustup-home/toolchains/beta-2020-08-29-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/libunwind-5b411645fa399254.rlib" "/opt/rustwide/rustup-home/toolchains/beta-2020-08-29-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/libcfg_if-d76bc972648498d6.rlib" "/opt/rustwide/rustup-home/toolchains/beta-2020-08-29-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/liblibc-b37fb9c9975d4585.rlib" "/opt/rustwide/rustup-home/toolchains/beta-2020-08-29-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/liballoc-493e2cd31ebb4e0f.rlib" "/opt/rustwide/rustup-home/toolchains/beta-2020-08-29-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/librustc_std_workspace_core-727cdf2b6a468113.rlib" "/opt/rustwide/rustup-home/toolchains/beta-2020-08-29-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/libcore-cf4d442d877ea2f4.rlib" "-Wl,--end-group" "/opt/rustwide/rustup-home/toolchains/beta-2020-08-29-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/libcompiler_builtins-8868cbc5d314613c.rlib" "-Wl,-Bdynamic" "-lhdf5" "-ldl" "-lrt" "-lpthread" "-lgcc_s" "-lc" "-lm" "-lrt" "-lpthread" "-lutil" "-ldl" "-lutil"
[INFO] [stdout]   = note: /usr/bin/ld: cannot find -lhdf5
[INFO] [stdout]           collect2: error: ld returned 1 exit status
[INFO] [stdout]           
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error: aborting due to previous error
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr] error: could not compile `libhdf5-sys`.
[INFO] [stderr] 
[INFO] [stderr] To learn more, run the command again with --verbose.
[INFO] [stderr] warning: build failed, waiting for other jobs to finish...
[INFO] [stdout] error: linking with `cc` failed: exit code: 1
[INFO] [stdout]   |
[INFO] [stdout]   = note: "cc" "-Wl,--as-needed" "-Wl,-z,noexecstack" "-m64" "-Wl,--eh-frame-hdr" "-L" "/opt/rustwide/rustup-home/toolchains/beta-2020-08-29-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib" "/opt/rustwide/target/debug/build/hdf5-rs-1636461336385c11/build_script_build-1636461336385c11.build_script_build.ezhymqf2-cgu.0.rcgu.o" "/opt/rustwide/target/debug/build/hdf5-rs-1636461336385c11/build_script_build-1636461336385c11.build_script_build.ezhymqf2-cgu.1.rcgu.o" "/opt/rustwide/target/debug/build/hdf5-rs-1636461336385c11/build_script_build-1636461336385c11.build_script_build.ezhymqf2-cgu.2.rcgu.o" "/opt/rustwide/target/debug/build/hdf5-rs-1636461336385c11/build_script_build-1636461336385c11.build_script_build.ezhymqf2-cgu.3.rcgu.o" "/opt/rustwide/target/debug/build/hdf5-rs-1636461336385c11/build_script_build-1636461336385c11.build_script_build.ezhymqf2-cgu.4.rcgu.o" "/opt/rustwide/target/debug/build/hdf5-rs-1636461336385c11/build_script_build-1636461336385c11.build_script_build.ezhymqf2-cgu.5.rcgu.o" "-o" "/opt/rustwide/target/debug/build/hdf5-rs-1636461336385c11/build_script_build-1636461336385c11" "/opt/rustwide/target/debug/build/hdf5-rs-1636461336385c11/build_script_build-1636461336385c11.28jgftsjzykd6uqv.rcgu.o" "-Wl,--gc-sections" "-pie" "-Wl,-zrelro" "-Wl,-znow" "-nodefaultlibs" "-L" "/opt/rustwide/target/debug/deps" "-L" "/opt/rustwide/rustup-home/toolchains/beta-2020-08-29-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib" "-Wl,-Bstatic" "/opt/rustwide/target/debug/deps/liblibhdf5_lib-1c232c6a88dfad05.rlib" "-Wl,--start-group" "/opt/rustwide/rustup-home/toolchains/beta-2020-08-29-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/libstd-b5ad74bd84224810.rlib" "/opt/rustwide/rustup-home/toolchains/beta-2020-08-29-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/libpanic_unwind-26a1f571fc41e545.rlib" "/opt/rustwide/rustup-home/toolchains/beta-2020-08-29-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/libminiz_oxide-f5a491ac3f4cef4e.rlib" "/opt/rustwide/rustup-home/toolchains/beta-2020-08-29-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/libadler-c201d25add2f427a.rlib" "/opt/rustwide/rustup-home/toolchains/beta-2020-08-29-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/libobject-24b3eaf3b9f39a4d.rlib" "/opt/rustwide/rustup-home/toolchains/beta-2020-08-29-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/libaddr2line-4755f99fa32ed4f2.rlib" "/opt/rustwide/rustup-home/toolchains/beta-2020-08-29-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/libgimli-0e694316d0b3e45e.rlib" "/opt/rustwide/rustup-home/toolchains/beta-2020-08-29-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/librustc_demangle-ea5311801a274ea7.rlib" "/opt/rustwide/rustup-home/toolchains/beta-2020-08-29-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/libhashbrown-c40b74d63d88a7bb.rlib" "/opt/rustwide/rustup-home/toolchains/beta-2020-08-29-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/librustc_std_workspace_alloc-07451f79951e780d.rlib" "/opt/rustwide/rustup-home/toolchains/beta-2020-08-29-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/libunwind-5b411645fa399254.rlib" "/opt/rustwide/rustup-home/toolchains/beta-2020-08-29-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/libcfg_if-d76bc972648498d6.rlib" "/opt/rustwide/rustup-home/toolchains/beta-2020-08-29-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/liblibc-b37fb9c9975d4585.rlib" "/opt/rustwide/rustup-home/toolchains/beta-2020-08-29-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/liballoc-493e2cd31ebb4e0f.rlib" "/opt/rustwide/rustup-home/toolchains/beta-2020-08-29-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/librustc_std_workspace_core-727cdf2b6a468113.rlib" "/opt/rustwide/rustup-home/toolchains/beta-2020-08-29-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/libcore-cf4d442d877ea2f4.rlib" "-Wl,--end-group" "/opt/rustwide/rustup-home/toolchains/beta-2020-08-29-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/libcompiler_builtins-8868cbc5d314613c.rlib" "-Wl,-Bdynamic" "-lhdf5" "-ldl" "-lrt" "-lpthread" "-lgcc_s" "-lc" "-lm" "-lrt" "-lpthread" "-lutil" "-ldl" "-lutil"
[INFO] [stdout]   = note: /usr/bin/ld: cannot find -lhdf5
[INFO] [stdout]           collect2: error: ld returned 1 exit status
[INFO] [stdout]           
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error: aborting due to previous error
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr] error: build failed
[INFO] running `Command { std: "docker" "inspect" "64cec24dbdb8de35bf37f0b5cd7463ebb09b241d944a7c15c2522acd8d466600", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "64cec24dbdb8de35bf37f0b5cd7463ebb09b241d944a7c15c2522acd8d466600", kill_on_drop: false }`
[INFO] [stdout] 64cec24dbdb8de35bf37f0b5cd7463ebb09b241d944a7c15c2522acd8d466600