[INFO] cloning repository https://github.com/rhysnewell/Kallisto_Indexer
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/rhysnewell/Kallisto_Indexer" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Frhysnewell%2FKallisto_Indexer", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Frhysnewell%2FKallisto_Indexer'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] fb2da531c4e51b75f98c9782bc949a5d3d711a18
[INFO] documenting rhysnewell/Kallisto_Indexer against beta-2020-08-29 for beta-1.47-rustdoc-1
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Frhysnewell%2FKallisto_Indexer" "/workspace/builds/worker-2/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-2/source'...
[INFO] [stderr] done.
[INFO] validating manifest of git repo https://github.com/rhysnewell/Kallisto_Indexer on toolchain beta-2020-08-29
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+beta-2020-08-29" "read-manifest" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] started tweaking git repo https://github.com/rhysnewell/Kallisto_Indexer
[INFO] finished tweaking git repo https://github.com/rhysnewell/Kallisto_Indexer
[INFO] tweaked toml for git repo https://github.com/rhysnewell/Kallisto_Indexer written to /workspace/builds/worker-2/source/Cargo.toml
[INFO] crate git repo https://github.com/rhysnewell/Kallisto_Indexer already has a lockfile, it will not be regenerated
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+beta-2020-08-29" "fetch" "--locked" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded bio-types v0.3.0
[INFO] [stderr]   Downloaded bio v0.20.3
[INFO] [stderr]   Downloaded libz-sys v1.0.23
[INFO] [stderr]   Downloaded lzma-sys v0.1.10
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:d92eaeed33fa75130ca1ee6c8a01d1ffb62bac859dfdfb3450e3e5d1c0146529" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2020-08-29" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 4230270cf31b2934aedf707621923ce18acaca3633832be30c0d4e1981a1e41c
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] running `Command { std: "docker" "start" "-a" "4230270cf31b2934aedf707621923ce18acaca3633832be30c0d4e1981a1e41c", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "4230270cf31b2934aedf707621923ce18acaca3633832be30c0d4e1981a1e41c", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "4230270cf31b2934aedf707621923ce18acaca3633832be30c0d4e1981a1e41c", kill_on_drop: false }`
[INFO] [stdout] 4230270cf31b2934aedf707621923ce18acaca3633832be30c0d4e1981a1e41c
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:d92eaeed33fa75130ca1ee6c8a01d1ffb62bac859dfdfb3450e3e5d1c0146529" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2020-08-29" "doc" "--frozen" "--no-deps" "--document-private-items" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] c3771011da4bb4c77da73d850298f6790b754d4c5c3085d835af232fc37d0054
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] running `Command { std: "docker" "start" "-a" "c3771011da4bb4c77da73d850298f6790b754d4c5c3085d835af232fc37d0054", kill_on_drop: false }`
[INFO] [stderr]    Compiling libc v0.2.43
[INFO] [stderr]    Compiling proc-macro2 v0.4.19
[INFO] [stderr]    Compiling serde v1.0.79
[INFO] [stderr]    Compiling cfg-if v0.1.5
[INFO] [stderr]    Compiling regex v1.0.5
[INFO] [stderr]    Compiling ucd-util v0.1.1
[INFO] [stderr]    Compiling quick-error v1.2.2
[INFO] [stderr]    Compiling utf8-ranges v1.0.1
[INFO] [stderr]    Compiling unicode-width v0.1.5
[INFO] [stderr]    Compiling bindgen v0.36.1
[INFO] [stderr]    Compiling termcolor v1.0.4
[INFO] [stderr]    Compiling strsim v0.7.0
[INFO] [stderr]    Compiling matrixmultiply v0.1.14
[INFO] [stderr]    Compiling ndarray v0.9.1
[INFO] [stderr]    Compiling bv v0.7.4
[INFO] [stderr]     Checking rand_core v0.2.1
[INFO] [stderr]     Checking custom_derive v0.1.7
[INFO] [stderr]     Checking linear-map v1.2.0
[INFO] [stderr]     Checking bytecount v0.3.2
[INFO] [stderr]     Checking ieee754 v0.2.2
[INFO] [stderr]    Compiling memchr v2.1.0
[INFO] [stderr]    Compiling lazy_static v1.1.0
[INFO] [stderr]    Compiling proc-macro2 v0.3.5
[INFO] [stderr]     Checking regex-syntax v0.5.6
[INFO] [stderr]     Checking regex-syntax v0.6.2
[INFO] [stderr]    Compiling libloading v0.5.0
[INFO] [stderr]    Compiling bzip2-sys v0.1.6 (https://github.com/alexcrichton/bzip2-rs.git#54aef435)
[INFO] [stderr]    Compiling libz-sys v1.0.23
[INFO] [stderr]    Compiling clang-sys v0.22.0
[INFO] [stderr]     Checking itertools v0.6.5
[INFO] [stderr]    Compiling log v0.4.5
[INFO] [stderr]     Checking fxhash v0.2.1
[INFO] [stderr]    Compiling textwrap v0.10.0
[INFO] [stderr]    Compiling humantime v1.1.1
[INFO] [stderr]    Compiling fs-utils v1.1.0
[INFO] [stderr]     Checking rand v0.5.5
[INFO] [stderr]     Checking log v0.3.9
[INFO] [stderr]    Compiling atty v0.2.11
[INFO] [stderr]    Compiling memchr v1.0.2
[INFO] [stderr]    Compiling filetime v0.2.1
[INFO] [stderr]    Compiling which v1.0.5
[INFO] [stderr]    Compiling newtype_derive v0.1.6
[INFO] [stderr]     Checking nix v0.11.0
[INFO] [stderr]    Compiling quote v0.5.2
[INFO] [stderr]     Checking num-complex v0.1.43
[INFO] [stderr]     Checking itertools-num v0.1.2
[INFO] [stderr]    Compiling nom v3.2.1
[INFO] [stderr]     Checking url v1.7.1
[INFO] [stderr]     Checking ordered-float v0.5.2
[INFO] [stderr]    Compiling lzma-sys v0.1.10
[INFO] [stderr]    Compiling thread_local v0.3.6
[INFO] [stderr]    Compiling aho-corasick v0.6.8
[INFO] [stderr]     Checking csv-core v0.1.4
[INFO] [stderr]     Checking tempfile v3.0.4
[INFO] [stderr]    Compiling quote v0.6.8
[INFO] [stderr]    Compiling regex v0.2.11
[INFO] [stderr]    Compiling syn v0.15.6
[INFO] [stderr]    Compiling cexpr v0.2.3
[INFO] [stderr]     Checking env_logger v0.4.3
[INFO] [stderr]    Compiling env_logger v0.5.13
[INFO] [stderr]    Compiling serde_derive v1.0.79
[INFO] [stderr]     Checking vec_map v0.8.1
[INFO] [stderr]     Checking bio-types v0.3.0
[INFO] [stderr]     Checking multimap v0.4.0
[INFO] [stderr]     Checking csv v1.0.2
[INFO] [stderr]     Checking clap v2.32.0
[INFO] [stderr]     Checking bio v0.20.3
[INFO] [stderr]    Compiling rust-htslib v0.21.1-alpha.0 (https://github.com/rust-bio/rust-htslib#1f9736ef)
[INFO] [stderr]  Documenting kmer_indexer v0.1.0 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished dev [unoptimized + debuginfo] target(s) in 2m 33s
[INFO] running `Command { std: "docker" "inspect" "c3771011da4bb4c77da73d850298f6790b754d4c5c3085d835af232fc37d0054", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "c3771011da4bb4c77da73d850298f6790b754d4c5c3085d835af232fc37d0054", kill_on_drop: false }`
[INFO] [stdout] c3771011da4bb4c77da73d850298f6790b754d4c5c3085d835af232fc37d0054