[INFO] cloning repository https://github.com/berquist/rchem [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/berquist/rchem" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fberquist%2Frchem", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fberquist%2Frchem'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] be65d6586d89a68505852bfc963de8dba6d14283 [INFO] documenting berquist/rchem against beta-2020-08-29 for beta-1.47-rustdoc-1 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fberquist%2Frchem" "/workspace/builds/worker-5/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-5/source'... [INFO] [stderr] done. [INFO] validating manifest of git repo https://github.com/berquist/rchem on toolchain beta-2020-08-29 [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+beta-2020-08-29" "read-manifest" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] started tweaking git repo https://github.com/berquist/rchem [INFO] removed path dependency factorial from git repo https://github.com/berquist/rchem [INFO] finished tweaking git repo https://github.com/berquist/rchem [INFO] tweaked toml for git repo https://github.com/berquist/rchem written to /workspace/builds/worker-5/source/Cargo.toml [INFO] crate git repo https://github.com/berquist/rchem already has a lockfile, it will not be regenerated [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+beta-2020-08-29" "fetch" "--locked" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Updating crates.io index [INFO] [stderr] Updating git repository `https://github.com/berquist/boys` [INFO] [stderr] error: the lock file /workspace/builds/worker-5/source/Cargo.lock needs to be updated but --locked was passed to prevent this [INFO] [stderr] If you want to try to generate the lock file without accessing the network, use the --offline flag. [INFO] the lockfile is outdated, regenerating it [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+beta-2020-08-29" "generate-lockfile" "--manifest-path" "Cargo.toml" "-Zno-index-update", kill_on_drop: false }` [INFO] [stderr] Updating git repository `https://github.com/berquist/boys` [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+beta-2020-08-29" "fetch" "--locked" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded blas-src v0.2.1 [INFO] [stderr] Downloaded factorial v0.2.0 [INFO] [stderr] Downloaded cauchy v0.2.2 [INFO] [stderr] Downloaded criterion v0.2.11 [INFO] [stderr] Downloaded rand_xoshiro v0.1.0 [INFO] [stderr] Downloaded blas-src v0.3.0 [INFO] [stderr] Downloaded ndarray-linalg v0.11.1 [INFO] [stderr] Downloaded python3-sys v0.2.1 [INFO] [stderr] Downloaded lapack-src v0.3.0 [INFO] [stderr] Downloaded lapacke-sys v0.1.4 [INFO] [stderr] Downloaded lapacke v0.2.0 [INFO] [stderr] Downloaded cblas-sys v0.1.4 [INFO] [stderr] Downloaded criterion-plot v0.3.1 [INFO] [stderr] Downloaded cpython v0.2.1 [INFO] [stderr] Downloaded chemfiles v0.9.0 [INFO] [stderr] Downloaded chemfiles-sys v0.9.3 [INFO] [stderr] Downloaded netlib-src v0.7.4 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:d92eaeed33fa75130ca1ee6c8a01d1ffb62bac859dfdfb3450e3e5d1c0146529" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2020-08-29" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 28f7259123f44a5948344060c450bacca780f80d631caca750db56b7f7a0aa28 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "28f7259123f44a5948344060c450bacca780f80d631caca750db56b7f7a0aa28", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "28f7259123f44a5948344060c450bacca780f80d631caca750db56b7f7a0aa28", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "28f7259123f44a5948344060c450bacca780f80d631caca750db56b7f7a0aa28", kill_on_drop: false }` [INFO] [stdout] 28f7259123f44a5948344060c450bacca780f80d631caca750db56b7f7a0aa28 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:d92eaeed33fa75130ca1ee6c8a01d1ffb62bac859dfdfb3450e3e5d1c0146529" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2020-08-29" "doc" "--frozen" "--no-deps" "--document-private-items" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 68ef1e60af86d97040a1208fc77fde1279178793720cb3944404e7a162c43f0a [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "68ef1e60af86d97040a1208fc77fde1279178793720cb3944404e7a162c43f0a", kill_on_drop: false }` [INFO] [stderr] Compiling ndarray v0.12.1 [INFO] [stderr] Compiling cpython v0.2.1 [INFO] [stderr] Checking blas-src v0.2.1 [INFO] [stderr] Compiling num-complex v0.2.4 [INFO] [stderr] Compiling GSL v1.1.0 [INFO] [stderr] Compiling netlib-src v0.7.4 [INFO] [stderr] Compiling chemfiles-sys v0.9.3 [INFO] [stderr] Checking cblas-sys v0.1.4 [INFO] [stderr] Checking lapacke-sys v0.1.4 [INFO] [stderr] Checking factorial v0.2.0 [INFO] [stderr] Compiling python3-sys v0.2.1 [INFO] [stderr] Compiling bindgen v0.53.3 [INFO] [stderr] Checking cauchy v0.2.2 [INFO] [stderr] Checking lapacke v0.2.0 [INFO] [stderr] Checking boys v0.1.0 (https://github.com/berquist/boys#d04dfaf1) [INFO] [stderr] Compiling rchem v0.1.0 (/opt/rustwide/workdir) [INFO] [stderr] error: failed to run custom build command for `chemfiles-sys v0.9.3` [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] process didn't exit successfully: `/opt/rustwide/target/debug/build/chemfiles-sys-1f01a8f101c5d120/build-script-build` (exit code: 101) [INFO] [stderr] --- stdout [INFO] [stderr] running: "cmake" "/opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/chemfiles-sys-0.9.3/." "-DCMAKE_INSTALL_PREFIX=/opt/rustwide/target/debug/build/chemfiles-sys-792c0271fc77a761/out" "-DCMAKE_C_FLAGS= -ffunction-sections -fdata-sections -fPIC -m64" "-DCMAKE_C_COMPILER=/usr/bin/cc" "-DCMAKE_CXX_FLAGS= -ffunction-sections -fdata-sections -fPIC -m64" "-DCMAKE_CXX_COMPILER=/usr/bin/c++" "-DCMAKE_ASM_FLAGS= -ffunction-sections -fdata-sections -fPIC -m64" "-DCMAKE_ASM_COMPILER=/usr/bin/cc" "-DCMAKE_BUILD_TYPE=Debug" [INFO] [stderr] -- The C compiler identification is GNU 9.3.0 [INFO] [stderr] -- The CXX compiler identification is GNU 9.3.0 [INFO] [stderr] -- Check for working C compiler: /usr/bin/cc [INFO] [stderr] -- Check for working C compiler: /usr/bin/cc -- works [INFO] [stderr] -- Detecting C compiler ABI info [INFO] [stderr] -- Detecting C compiler ABI info - done [INFO] [stderr] -- Detecting C compile features [INFO] [stderr] -- Detecting C compile features - done [INFO] [stderr] -- Check for working CXX compiler: /usr/bin/c++ [INFO] [stderr] -- Check for working CXX compiler: /usr/bin/c++ -- works [INFO] [stderr] -- Detecting CXX compiler ABI info [INFO] [stderr] -- Detecting CXX compiler ABI info - done [INFO] [stderr] -- Detecting CXX compile features [INFO] [stderr] -- Detecting CXX compile features - done [INFO] [stderr] -- Running CMake version 3.16.3 [INFO] [stderr] -- Unpacking zlib sources [INFO] [stderr] -- Unpacking lzma sources [INFO] [stderr] -- Check if the system is big endian [INFO] [stderr] -- Searching 16 bit integer [INFO] [stderr] -- Using unsigned short [INFO] [stderr] -- Check if the system is big endian - little endian [INFO] [stderr] -- Unpacking bzip2 sources [INFO] [stderr] -- Unpacking fmt sources [INFO] [stderr] -- Unpacking toml11 sources [INFO] [stderr] -- Unpacking netcdf sources [INFO] [stderr] -- Unpacking tng sources [INFO] [stderr] -- Check if the system is big endian [INFO] [stderr] -- Searching 16 bit integer [INFO] [stderr] -- Using unsigned short [INFO] [stderr] -- Check if the system is big endian - little endian [INFO] [stderr] -- Unpacking molfiles sources [INFO] [stderr] -- Unpacking mmtf-cpp sources [INFO] [stderr] -- Unpacking pugixml sources [INFO] [stderr] -- Unpacking xdrfile sources [INFO] [stderr] -- Configuring done [INFO] [stderr] -- Generating done [INFO] [stderr] -- Build files have been written to: /opt/rustwide/target/debug/build/chemfiles-sys-792c0271fc77a761/out/build [INFO] [stderr] running: "cmake" "--build" "." "--target" "install" "--config" "Debug" "--" [INFO] [stderr] Scanning dependencies of target xdrfile [INFO] [stderr] [ 1%] Building C object chemfiles/external/xdrfile/CMakeFiles/xdrfile.dir/src/xdrfile.c.o [INFO] [stderr] [ 1%] Building C object chemfiles/external/xdrfile/CMakeFiles/xdrfile.dir/src/xdrfile_trr.c.o [INFO] [stderr] [ 2%] Building C object chemfiles/external/xdrfile/CMakeFiles/xdrfile.dir/src/xdrfile_xtc.c.o [INFO] [stderr] Scanning dependencies of target pugixml [INFO] [stderr] [ 3%] Building CXX object chemfiles/external/CMakeFiles/pugixml.dir/pugixml/src/pugixml.cpp.o [INFO] [stderr] Scanning dependencies of target zlib [INFO] [stderr] [ 3%] Building C object chemfiles/external/zlib/CMakeFiles/zlib.dir/adler32.c.o [INFO] [stderr] [ 3%] Built target xdrfile [INFO] [stderr] Scanning dependencies of target chemfiles_objects [INFO] [stderr] Scanning dependencies of target bzip2 [INFO] [stderr] [ 4%] Building C object chemfiles/external/zlib/CMakeFiles/zlib.dir/compress.c.o [INFO] [stderr] [ 4%] Building C object chemfiles/external/bzip2/CMakeFiles/bzip2.dir/blocksort.c.o [INFO] [stderr] [ 5%] Building CXX object chemfiles/CMakeFiles/chemfiles_objects.dir/src/Atom.cpp.o [INFO] [stderr] Scanning dependencies of target lzma [INFO] [stderr] [ 5%] Building C object chemfiles/external/zlib/CMakeFiles/zlib.dir/crc32.c.o [INFO] [stderr] [ 6%] Building C object chemfiles/external/lzma/CMakeFiles/lzma.dir/liblzma/check/check.c.o [INFO] [stderr] Scanning dependencies of target fmt [INFO] [stderr] [ 7%] Building CXX object chemfiles/external/fmt/CMakeFiles/fmt.dir/src/format.cc.o [INFO] [stderr] [ 7%] Building C object chemfiles/external/lzma/CMakeFiles/lzma.dir/liblzma/check/crc32_fast.c.o [INFO] [stderr] [ 7%] Building C object chemfiles/external/bzip2/CMakeFiles/bzip2.dir/huffman.c.o [INFO] [stderr] [ 8%] Building C object chemfiles/external/lzma/CMakeFiles/lzma.dir/liblzma/check/crc32_table.c.o [INFO] 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in CMakeLists.txt: [INFO] [stderr] No project() command is present. The top-level CMakeLists.txt file must [INFO] [stderr] contain a literal, direct call to the project() command. Add a line of [INFO] [stderr] code such as [INFO] [stderr] [INFO] [stderr] project(ProjectName) [INFO] [stderr] [INFO] [stderr] near the top of the file, but after cmake_minimum_required(). [INFO] [stderr] [INFO] [stderr] CMake is pretending there is a "project(Project)" command on the first [INFO] [stderr] line. [INFO] [stderr] This warning is for project developers. Use -Wno-dev to suppress it. [INFO] [stderr] [INFO] [stderr] CMake Warning (dev) at chemfiles/CMakeLists.txt:27 (option): [INFO] [stderr] Policy CMP0077 is not set: option() honors normal variables. Run "cmake [INFO] [stderr] --help-policy CMP0077" for policy details. Use the cmake_policy command to [INFO] [stderr] set the policy and suppress this warning. [INFO] [stderr] [INFO] [stderr] For compatibility with older versions of CMake, option is clearing the [INFO] [stderr] normal variable 'BUILD_SHARED_LIBS'. [INFO] [stderr] This warning is for project developers. Use -Wno-dev to suppress it. [INFO] [stderr] [INFO] [stderr] CMake Warning: [INFO] [stderr] Manually-specified variables were not used by the project: [INFO] [stderr] [INFO] [stderr] CMAKE_ASM_COMPILER [INFO] [stderr] CMAKE_ASM_FLAGS [INFO] [stderr] [INFO] [stderr] [INFO] [stderr] In file included from /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/chemfiles-sys-0.9.3/chemfiles/src/capi/atom.cpp:10: [INFO] [stderr] /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/chemfiles-sys-0.9.3/chemfiles/include/chemfiles/capi/utils.hpp: In function 'size_t chemfiles::checked_cast(uint64_t)': [INFO] [stderr] /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/chemfiles-sys-0.9.3/chemfiles/include/chemfiles/capi/utils.hpp:27:47: warning: useless cast to type 'uint64_t' {aka 'long unsigned int'} [-Wuseless-cast] [INFO] [stderr] 27 | if (value > static_cast(SIZE_MAX)) { [INFO] [stderr] | ^ [INFO] [stderr] /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/chemfiles-sys-0.9.3/chemfiles/include/chemfiles/capi/utils.hpp:30:37: warning: useless cast to type 'size_t' {aka 'long unsigned int'} [-Wuseless-cast] [INFO] [stderr] 30 | return static_cast(value); [INFO] [stderr] | ^ [INFO] [stderr] In file included from /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/chemfiles-sys-0.9.3/chemfiles/src/capi/cell.cpp:9: [INFO] [stderr] /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/chemfiles-sys-0.9.3/chemfiles/include/chemfiles/capi/utils.hpp: In function 'size_t chemfiles::checked_cast(uint64_t)': [INFO] [stderr] /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/chemfiles-sys-0.9.3/chemfiles/include/chemfiles/capi/utils.hpp:27:47: warning: useless cast to type 'uint64_t' {aka 'long unsigned int'} [-Wuseless-cast] [INFO] [stderr] 27 | if (value > static_cast(SIZE_MAX)) { [INFO] [stderr] | ^ [INFO] [stderr] /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/chemfiles-sys-0.9.3/chemfiles/include/chemfiles/capi/utils.hpp:30:37: warning: useless cast to type 'size_t' {aka 'long unsigned int'} [-Wuseless-cast] [INFO] [stderr] 30 | return static_cast(value); [INFO] [stderr] | ^ [INFO] [stderr] /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/chemfiles-sys-0.9.3/chemfiles/src/capi/atom.cpp: In function 'chfl_status chfl_atom_properties_count(const CHFL_ATOM*, uint64_t*)': [INFO] [stderr] /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/chemfiles-sys-0.9.3/chemfiles/src/capi/atom.cpp:189:65: warning: useless cast to type 'uint64_t' {aka 'long unsigned int'} [-Wuseless-cast] [INFO] [stderr] 189 | *count = static_cast(atom->properties().size()); [INFO] [stderr] | ^ [INFO] [stderr] /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/chemfiles-sys-0.9.3/chemfiles/include/chemfiles/capi/utils.hpp:81:9: note: in definition of macro 'CHFL_ERROR_CATCH' [INFO] [stderr] 81 | instructions \ [INFO] [stderr] | ^~~~~~~~~~~~ [INFO] [stderr] c++: fatal error: Killed signal terminated program cc1plus [INFO] [stderr] compilation terminated. [INFO] [stderr] c++: fatal error: Killed signal terminated program cc1plus [INFO] [stderr] compilation terminated. [INFO] [stderr] make[2]: *** [chemfiles/CMakeFiles/chemfiles_objects.dir/build.make:128: chemfiles/CMakeFiles/chemfiles_objects.dir/src/FormatFactory.cpp.o] Error 1 [INFO] [stderr] make[2]: *** Waiting for unfinished jobs.... [INFO] [stderr] make[2]: *** [chemfiles/CMakeFiles/chemfiles_objects.dir/build.make:76: chemfiles/CMakeFiles/chemfiles_objects.dir/src/Configuration.cpp.o] Error 1 [INFO] [stderr] In file included from /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/chemfiles-sys-0.9.3/chemfiles/src/capi/misc.cpp:8: [INFO] [stderr] /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/chemfiles-sys-0.9.3/chemfiles/include/chemfiles/capi/utils.hpp: In function 'size_t chemfiles::checked_cast(uint64_t)': [INFO] [stderr] /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/chemfiles-sys-0.9.3/chemfiles/include/chemfiles/capi/utils.hpp:27:47: warning: useless cast to type 'uint64_t' {aka 'long unsigned int'} [-Wuseless-cast] [INFO] [stderr] 27 | if (value > static_cast(SIZE_MAX)) { [INFO] [stderr] | ^ [INFO] [stderr] /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/chemfiles-sys-0.9.3/chemfiles/include/chemfiles/capi/utils.hpp:30:37: warning: useless cast to type 'size_t' {aka 'long unsigned int'} [-Wuseless-cast] [INFO] [stderr] 30 | return static_cast(value); [INFO] [stderr] | ^ [INFO] [stderr] In file included from /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/chemfiles-sys-0.9.3/chemfiles/src/capi/frame.cpp:9: [INFO] [stderr] /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/chemfiles-sys-0.9.3/chemfiles/include/chemfiles/capi/utils.hpp: In function 'size_t chemfiles::checked_cast(uint64_t)': [INFO] [stderr] /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/chemfiles-sys-0.9.3/chemfiles/include/chemfiles/capi/utils.hpp:27:47: warning: useless cast to type 'uint64_t' {aka 'long unsigned int'} [-Wuseless-cast] [INFO] [stderr] 27 | if (value > static_cast(SIZE_MAX)) { [INFO] [stderr] | ^ [INFO] [stderr] /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/chemfiles-sys-0.9.3/chemfiles/include/chemfiles/capi/utils.hpp:30:37: warning: useless cast to type 'size_t' {aka 'long unsigned int'} [-Wuseless-cast] [INFO] [stderr] 30 | return static_cast(value); [INFO] [stderr] | ^ [INFO] [stderr] In file included from /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/chemfiles-sys-0.9.3/chemfiles/src/capi/property.cpp:11: [INFO] [stderr] /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/chemfiles-sys-0.9.3/chemfiles/include/chemfiles/capi/utils.hpp: In function 'size_t chemfiles::checked_cast(uint64_t)': [INFO] [stderr] /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/chemfiles-sys-0.9.3/chemfiles/include/chemfiles/capi/utils.hpp:27:47: warning: useless cast to type 'uint64_t' {aka 'long unsigned int'} [-Wuseless-cast] [INFO] [stderr] 27 | if (value > static_cast(SIZE_MAX)) { [INFO] [stderr] | ^ [INFO] [stderr] /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/chemfiles-sys-0.9.3/chemfiles/include/chemfiles/capi/utils.hpp:30:37: warning: useless cast to type 'size_t' {aka 'long unsigned int'} [-Wuseless-cast] [INFO] [stderr] 30 | return static_cast(value); [INFO] [stderr] | ^ [INFO] [stderr] c++: fatal error: Killed signal terminated program cc1plus [INFO] [stderr] compilation terminated. [INFO] [stderr] make[2]: *** [chemfiles/CMakeFiles/chemfiles_objects.dir/build.make:180: chemfiles/CMakeFiles/chemfiles_objects.dir/src/Selection.cpp.o] Error 1 [INFO] [stderr] /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/chemfiles-sys-0.9.3/chemfiles/src/capi/frame.cpp: In function 'chfl_status chfl_frame_atoms_count(const CHFL_FRAME*, uint64_t*)': [INFO] [stderr] /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/chemfiles-sys-0.9.3/chemfiles/src/capi/frame.cpp:49:53: warning: useless cast to type 'uint64_t' {aka 'long unsigned int'} [-Wuseless-cast] [INFO] [stderr] 49 | *count = static_cast(frame->size()); [INFO] [stderr] | ^ [INFO] [stderr] /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/chemfiles-sys-0.9.3/chemfiles/include/chemfiles/capi/utils.hpp:81:9: note: in definition of macro 'CHFL_ERROR_CATCH' [INFO] [stderr] 81 | instructions \ [INFO] [stderr] | ^~~~~~~~~~~~ [INFO] [stderr] /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/chemfiles-sys-0.9.3/chemfiles/src/capi/frame.cpp: In function 'chfl_status chfl_frame_properties_count(const CHFL_FRAME*, uint64_t*)': [INFO] [stderr] /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/chemfiles-sys-0.9.3/chemfiles/src/capi/frame.cpp:212:66: warning: useless cast to type 'uint64_t' {aka 'long unsigned int'} [-Wuseless-cast] [INFO] [stderr] 212 | *count = static_cast(frame->properties().size()); [INFO] [stderr] | ^ [INFO] [stderr] /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/chemfiles-sys-0.9.3/chemfiles/include/chemfiles/capi/utils.hpp:81:9: note: in definition of macro 'CHFL_ERROR_CATCH' [INFO] [stderr] 81 | instructions \ [INFO] [stderr] | ^~~~~~~~~~~~ [INFO] [stderr] In file included from /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/chemfiles-sys-0.9.3/chemfiles/src/capi/residue.cpp:10: [INFO] [stderr] /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/chemfiles-sys-0.9.3/chemfiles/include/chemfiles/capi/utils.hpp: In function 'size_t chemfiles::checked_cast(uint64_t)': [INFO] [stderr] /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/chemfiles-sys-0.9.3/chemfiles/include/chemfiles/capi/utils.hpp:27:47: warning: useless cast to type 'uint64_t' {aka 'long unsigned int'} [-Wuseless-cast] [INFO] [stderr] 27 | if (value > static_cast(SIZE_MAX)) { [INFO] [stderr] | ^ [INFO] [stderr] /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/chemfiles-sys-0.9.3/chemfiles/include/chemfiles/capi/utils.hpp:30:37: warning: useless cast to type 'size_t' {aka 'long unsigned int'} [-Wuseless-cast] [INFO] [stderr] 30 | return static_cast(value); [INFO] [stderr] | ^ [INFO] [stderr] /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/chemfiles-sys-0.9.3/chemfiles/src/capi/residue.cpp: In function 'chfl_status chfl_residue_atoms_count(const CHFL_RESIDUE*, uint64_t*)': [INFO] [stderr] /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/chemfiles-sys-0.9.3/chemfiles/src/capi/residue.cpp:88:55: warning: useless cast to type 'uint64_t' {aka 'long unsigned int'} [-Wuseless-cast] [INFO] [stderr] 88 | *count = static_cast(residue->size()); [INFO] [stderr] | ^ [INFO] [stderr] /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/chemfiles-sys-0.9.3/chemfiles/include/chemfiles/capi/utils.hpp:81:9: note: in definition of macro 'CHFL_ERROR_CATCH' [INFO] [stderr] 81 | instructions \ [INFO] [stderr] | ^~~~~~~~~~~~ [INFO] [stderr] /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/chemfiles-sys-0.9.3/chemfiles/src/capi/residue.cpp: In function 'chfl_status chfl_residue_atoms(const CHFL_RESIDUE*, uint64_t*, uint64_t)': [INFO] [stderr] /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/chemfiles-sys-0.9.3/chemfiles/src/capi/residue.cpp:103:51: warning: useless cast to type 'uint64_t' {aka 'long unsigned int'} [-Wuseless-cast] [INFO] [stderr] 103 | atoms[i] = static_cast(index); [INFO] [stderr] | ^ [INFO] [stderr] /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/chemfiles-sys-0.9.3/chemfiles/include/chemfiles/capi/utils.hpp:81:9: note: in definition of macro 'CHFL_ERROR_CATCH' [INFO] [stderr] 81 | instructions \ [INFO] [stderr] | ^~~~~~~~~~~~ [INFO] [stderr] /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/chemfiles-sys-0.9.3/chemfiles/src/capi/residue.cpp: In function 'chfl_status chfl_residue_properties_count(const CHFL_RESIDUE*, uint64_t*)': [INFO] [stderr] /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/chemfiles-sys-0.9.3/chemfiles/src/capi/residue.cpp:149:68: warning: useless cast to type 'uint64_t' {aka 'long unsigned int'} [-Wuseless-cast] [INFO] [stderr] 149 | *count = static_cast(residue->properties().size()); [INFO] [stderr] | ^ [INFO] [stderr] /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/chemfiles-sys-0.9.3/chemfiles/include/chemfiles/capi/utils.hpp:81:9: note: in definition of macro 'CHFL_ERROR_CATCH' [INFO] [stderr] 81 | instructions \ [INFO] [stderr] | ^~~~~~~~~~~~ [INFO] [stderr] make[1]: *** [CMakeFiles/Makefile2:332: chemfiles/CMakeFiles/chemfiles_objects.dir/all] Error 2 [INFO] [stderr] make: *** [Makefile:130: all] Error 2 [INFO] [stderr] thread 'main' panicked at ' [INFO] [stderr] command did not execute successfully, got: exit code: 2 [INFO] [stderr] [INFO] [stderr] build script failed, must exit now', /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/cmake-0.1.44/src/lib.rs:885:5 [INFO] [stderr] stack backtrace: [INFO] [stderr] 0: 0x562567937500 - std::backtrace_rs::backtrace::libunwind::trace::h9e3e6d9b3369e699 [INFO] [stderr] at /rustc/84b047bf64dfcfa12867781e9c23dfa4f2e6082c/library/std/src/../../backtrace/src/backtrace/libunwind.rs:96 [INFO] [stderr] 1: 0x562567937500 - std::backtrace_rs::backtrace::trace_unsynchronized::he58aba3ac08ed12a [INFO] [stderr] at /rustc/84b047bf64dfcfa12867781e9c23dfa4f2e6082c/library/std/src/../../backtrace/src/backtrace/mod.rs:66 [INFO] [stderr] 2: 0x562567937500 - std::sys_common::backtrace::_print_fmt::hbbbd4c92d537cef4 [INFO] [stderr] at /rustc/84b047bf64dfcfa12867781e9c23dfa4f2e6082c/library/std/src/sys_common/backtrace.rs:79 [INFO] [stderr] 3: 0x562567937500 - ::fmt::h80c2ae080004cc83 [INFO] [stderr] at /rustc/84b047bf64dfcfa12867781e9c23dfa4f2e6082c/library/std/src/sys_common/backtrace.rs:58 [INFO] [stderr] 4: 0x5625679569ac - core::fmt::write::h0c11e16fd03fe660 [INFO] [stderr] at /rustc/84b047bf64dfcfa12867781e9c23dfa4f2e6082c/library/core/src/fmt/mod.rs:1082 [INFO] [stderr] 5: 0x562567933ef7 - std::io::Write::write_fmt::h2e2072ff86131fcd [INFO] [stderr] at /rustc/84b047bf64dfcfa12867781e9c23dfa4f2e6082c/library/std/src/io/mod.rs:1514 [INFO] [stderr] 6: 0x562567939c80 - std::sys_common::backtrace::_print::h165e6476adb4cb58 [INFO] [stderr] at /rustc/84b047bf64dfcfa12867781e9c23dfa4f2e6082c/library/std/src/sys_common/backtrace.rs:61 [INFO] [stderr] 7: 0x562567939c80 - std::sys_common::backtrace::print::hbbfa32a92cd1fc34 [INFO] [stderr] at /rustc/84b047bf64dfcfa12867781e9c23dfa4f2e6082c/library/std/src/sys_common/backtrace.rs:48 [INFO] [stderr] 8: 0x562567939c80 - std::panicking::default_hook::{{closure}}::h3a02067ca7f64068 [INFO] [stderr] at /rustc/84b047bf64dfcfa12867781e9c23dfa4f2e6082c/library/std/src/panicking.rs:200 [INFO] [stderr] 9: 0x5625679399cc - std::panicking::default_hook::ha3137d6f4e961fe2 [INFO] [stderr] at /rustc/84b047bf64dfcfa12867781e9c23dfa4f2e6082c/library/std/src/panicking.rs:219 [INFO] [stderr] 10: 0x56256793a2e3 - std::panicking::rust_panic_with_hook::he6505c3b9d82db8b [INFO] [stderr] at /rustc/84b047bf64dfcfa12867781e9c23dfa4f2e6082c/library/std/src/panicking.rs:569 [INFO] [stderr] 11: 0x562567939eb9 - std::panicking::begin_panic_handler::{{closure}}::h4aa640a9e8494520 [INFO] [stderr] at /rustc/84b047bf64dfcfa12867781e9c23dfa4f2e6082c/library/std/src/panicking.rs:476 [INFO] [stderr] 12: 0x56256793796c - std::sys_common::backtrace::__rust_end_short_backtrace::h85d2ae6a90dead9c [INFO] [stderr] at /rustc/84b047bf64dfcfa12867781e9c23dfa4f2e6082c/library/std/src/sys_common/backtrace.rs:153 [INFO] [stderr] 13: 0x562567939e79 - rust_begin_unwind [INFO] [stderr] at /rustc/84b047bf64dfcfa12867781e9c23dfa4f2e6082c/library/std/src/panicking.rs:475 [INFO] [stderr] 14: 0x562567939e2b - std::panicking::begin_panic_fmt::h7089e699b7754bbe [INFO] [stderr] at /rustc/84b047bf64dfcfa12867781e9c23dfa4f2e6082c/library/std/src/panicking.rs:429 [INFO] [stderr] 15: 0x5625678c4807 - cmake::fail::hf0f3f19e1ff44c4b [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/cmake-0.1.44/src/lib.rs:885 [INFO] [stderr] 16: 0x5625678c414c - cmake::run::h53b8a53f536e858f [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/cmake-0.1.44/src/lib.rs:863 [INFO] [stderr] 17: 0x5625678c08bb - cmake::Config::build::h4eb7926481614be8 [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/cmake-0.1.44/src/lib.rs:769 [INFO] [stderr] 18: 0x5625678bb378 - build_script_build::build_chemfiles::h554b4909a51914aa [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/chemfiles-sys-0.9.3/build.rs:18 [INFO] [stderr] 19: 0x5625678bb19e - build_script_build::main::h40c4702ddd2eb287 [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/chemfiles-sys-0.9.3/build.rs:8 [INFO] [stderr] 20: 0x5625678bca0b - core::ops::function::FnOnce::call_once::h22318bfeb644b4c1 [INFO] [stderr] at /rustc/84b047bf64dfcfa12867781e9c23dfa4f2e6082c/library/core/src/ops/function.rs:227 [INFO] [stderr] 21: 0x5625678bc0be - std::sys_common::backtrace::__rust_begin_short_backtrace::h03a079ba0b29b391 [INFO] [stderr] at /rustc/84b047bf64dfcfa12867781e9c23dfa4f2e6082c/library/std/src/sys_common/backtrace.rs:137 [INFO] [stderr] 22: 0x5625678bbf21 - std::rt::lang_start::{{closure}}::h5177d712180578d7 [INFO] [stderr] at /rustc/84b047bf64dfcfa12867781e9c23dfa4f2e6082c/library/std/src/rt.rs:66 [INFO] [stderr] 23: 0x56256793a6e1 - core::ops::function::impls:: for &F>::call_once::hdabbbe0d2c6ccde8 [INFO] [stderr] at /rustc/84b047bf64dfcfa12867781e9c23dfa4f2e6082c/library/core/src/ops/function.rs:259 [INFO] [stderr] 24: 0x56256793a6e1 - std::panicking::try::do_call::h0c8c1cd19bf9d385 [INFO] [stderr] at /rustc/84b047bf64dfcfa12867781e9c23dfa4f2e6082c/library/std/src/panicking.rs:373 [INFO] [stderr] 25: 0x56256793a6e1 - std::panicking::try::h357e78da017bc4a8 [INFO] [stderr] at /rustc/84b047bf64dfcfa12867781e9c23dfa4f2e6082c/library/std/src/panicking.rs:337 [INFO] [stderr] 26: 0x56256793a6e1 - std::panic::catch_unwind::h72f31b36adf61841 [INFO] [stderr] at /rustc/84b047bf64dfcfa12867781e9c23dfa4f2e6082c/library/std/src/panic.rs:379 [INFO] [stderr] 27: 0x56256793a6e1 - std::rt::lang_start_internal::h634502e153211333 [INFO] [stderr] at /rustc/84b047bf64dfcfa12867781e9c23dfa4f2e6082c/library/std/src/rt.rs:51 [INFO] [stderr] 28: 0x5625678bbef7 - std::rt::lang_start::h9a2fa6daa79f1598 [INFO] [stderr] at /rustc/84b047bf64dfcfa12867781e9c23dfa4f2e6082c/library/std/src/rt.rs:65 [INFO] [stderr] 29: 0x5625678bbc5a - main [INFO] [stderr] 30: 0x7fb7abd5b0b3 - __libc_start_main [INFO] [stderr] 31: 0x5625678bb0ce - _start [INFO] [stderr] 32: 0x0 - [INFO] [stderr] warning: build failed, waiting for other jobs to finish... [INFO] [stderr] error: build failed [INFO] running `Command { std: "docker" "inspect" "68ef1e60af86d97040a1208fc77fde1279178793720cb3944404e7a162c43f0a", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "68ef1e60af86d97040a1208fc77fde1279178793720cb3944404e7a162c43f0a", kill_on_drop: false }` [INFO] [stdout] 68ef1e60af86d97040a1208fc77fde1279178793720cb3944404e7a162c43f0a