[INFO] cloning repository https://github.com/MarcoMernberger/mbf_bam [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/MarcoMernberger/mbf_bam" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FMarcoMernberger%2Fmbf_bam", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FMarcoMernberger%2Fmbf_bam'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] 34e16cfeccb834cd3fa04ebf52845b699f518678 [INFO] documenting MarcoMernberger/mbf_bam against beta-2020-08-29 for beta-1.47-rustdoc-1 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FMarcoMernberger%2Fmbf_bam" "/workspace/builds/worker-0/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-0/source'... [INFO] [stderr] done. [INFO] validating manifest of git repo https://github.com/MarcoMernberger/mbf_bam on toolchain beta-2020-08-29 [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+beta-2020-08-29" "read-manifest" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] started tweaking git repo https://github.com/MarcoMernberger/mbf_bam [INFO] finished tweaking git repo https://github.com/MarcoMernberger/mbf_bam [INFO] tweaked toml for git repo https://github.com/MarcoMernberger/mbf_bam written to /workspace/builds/worker-0/source/Cargo.toml [INFO] crate git repo https://github.com/MarcoMernberger/mbf_bam already has a lockfile, it will not be regenerated [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+beta-2020-08-29" "fetch" "--locked" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded serde v1.0.90 [INFO] [stderr] Downloaded clang-sys v0.28.0 [INFO] [stderr] Downloaded proc-macro-hack-impl v0.4.1 [INFO] [stderr] Downloaded bv v0.10.0 [INFO] [stderr] Downloaded linear-map v1.2.0 [INFO] [stderr] Downloaded which v3.1.0 [INFO] [stderr] Downloaded pyo3 v0.6.0 [INFO] [stderr] Downloaded feature-probe v0.1.1 [INFO] [stderr] Downloaded csv-core v0.1.5 [INFO] [stderr] Downloaded mashup-impl v0.1.9 [INFO] [stderr] Downloaded lzma-sys v0.1.14 [INFO] [stderr] Downloaded ghost v0.1.0 [INFO] [stderr] Downloaded csv v1.0.6 [INFO] [stderr] Downloaded newtype_derive v0.1.6 [INFO] [stderr] Downloaded pyo3cls v0.6.0 [INFO] [stderr] Downloaded bio v0.25.0 [INFO] [stderr] Downloaded inventory-impl v0.1.3 [INFO] [stderr] Downloaded bio-types v0.5.1 [INFO] [stderr] Downloaded inventory v0.1.3 [INFO] [stderr] Downloaded pyo3-derive-backend v0.6.0 [INFO] [stderr] Downloaded serde_derive v1.0.90 [INFO] [stderr] Downloaded ieee754 v0.2.6 [INFO] [stderr] Downloaded proc-macro-hack v0.4.1 [INFO] [stderr] Downloaded fs-utils v1.1.0 [INFO] [stderr] Downloaded ctor v0.1.8 [INFO] [stderr] Downloaded mashup v0.1.9 [INFO] [stderr] Downloaded rust-htslib v0.24.0 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:d92eaeed33fa75130ca1ee6c8a01d1ffb62bac859dfdfb3450e3e5d1c0146529" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2020-08-29" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] ca73c42e5d5532681e422e2a5f613813187fbd75188d874df988bbf300365cc0 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "ca73c42e5d5532681e422e2a5f613813187fbd75188d874df988bbf300365cc0", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "ca73c42e5d5532681e422e2a5f613813187fbd75188d874df988bbf300365cc0", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "ca73c42e5d5532681e422e2a5f613813187fbd75188d874df988bbf300365cc0", kill_on_drop: false }` [INFO] [stdout] ca73c42e5d5532681e422e2a5f613813187fbd75188d874df988bbf300365cc0 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:d92eaeed33fa75130ca1ee6c8a01d1ffb62bac859dfdfb3450e3e5d1c0146529" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2020-08-29" "doc" "--frozen" "--no-deps" "--document-private-items" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 853c2b433dd20a5401347c3f2457ae810aa94bfdf40e7ce241af66e6ed4d06a5 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "853c2b433dd20a5401347c3f2457ae810aa94bfdf40e7ce241af66e6ed4d06a5", kill_on_drop: false }` [INFO] [stderr] Compiling libc v0.2.65 [INFO] [stderr] Compiling proc-macro2 v0.4.27 [INFO] [stderr] Compiling unicode-xid v0.1.0 [INFO] [stderr] Compiling syn v0.15.30 [INFO] [stderr] Compiling cc v1.0.35 [INFO] [stderr] Compiling memchr v2.2.1 [INFO] [stderr] Compiling serde v1.0.90 [INFO] [stderr] Compiling version_check v0.1.5 [INFO] [stderr] Compiling num-traits v0.2.6 [INFO] [stderr] Compiling byteorder v1.3.1 [INFO] [stderr] Compiling lazy_static v1.4.0 [INFO] [stderr] Compiling regex-syntax v0.6.12 [INFO] [stderr] Checking cfg-if v0.1.7 [INFO] [stderr] Compiling glob v0.2.11 [INFO] [stderr] Compiling pkg-config v0.3.14 [INFO] [stderr] Compiling quick-error v1.2.2 [INFO] [stderr] Compiling proc-macro2 v1.0.6 [INFO] [stderr] Compiling semver v0.1.20 [INFO] [stderr] Checking either v1.5.2 [INFO] [stderr] Compiling unicode-width v0.1.5 [INFO] [stderr] Compiling arrayvec v0.4.10 [INFO] [stderr] Checking nodrop v0.1.13 [INFO] [stderr] Compiling termcolor v1.0.4 [INFO] [stderr] Compiling strsim v0.8.0 [INFO] [stderr] Compiling ansi_term v0.11.0 [INFO] [stderr] Compiling bindgen v0.51.1 [INFO] [stderr] Compiling proc-macro-hack-impl v0.4.1 [INFO] [stderr] Compiling ryu v0.2.7 [INFO] [stderr] Compiling feature-probe v0.1.1 [INFO] [stderr] Compiling num-complex v0.2.1 [INFO] [stderr] Compiling matrixmultiply v0.1.15 [INFO] [stderr] Compiling peeking_take_while v0.1.2 [INFO] [stderr] Compiling autocfg v0.1.2 [INFO] [stderr] Checking smallvec v0.6.9 [INFO] [stderr] Compiling shlex v0.1.1 [INFO] [stderr] Compiling failure_derive v0.1.5 [INFO] [stderr] Compiling ndarray v0.12.1 [INFO] [stderr] Checking itoa v0.4.3 [INFO] [stderr] Checking bit-vec v0.5.1 [INFO] [stderr] Checking custom_derive v0.1.7 [INFO] [stderr] Compiling bio v0.25.0 [INFO] [stderr] Compiling rayon v1.0.3 [INFO] [stderr] Checking rustc-demangle v0.1.13 [INFO] [stderr] Checking bytecount v0.3.2 [INFO] [stderr] Checking bitflags v0.9.1 [INFO] [stderr] Checking linear-map v1.2.0 [INFO] [stderr] Checking spin v0.5.0 [INFO] [stderr] Checking ieee754 v0.2.6 [INFO] [stderr] Checking crossbeam-utils v0.2.2 [INFO] [stderr] Compiling thread_local v0.3.6 [INFO] [stderr] Compiling humantime v1.2.0 [INFO] [stderr] Compiling fs-utils v1.1.0 [INFO] [stderr] Compiling log v0.4.6 [INFO] [stderr] Compiling textwrap v0.11.0 [INFO] [stderr] Checking itertools v0.7.11 [INFO] [stderr] Checking itertools v0.8.0 [INFO] [stderr] Compiling rustc_version v0.1.7 [INFO] [stderr] Compiling nom v4.2.3 [INFO] [stderr] Compiling rayon-core v1.4.1 [INFO] [stderr] Compiling bv v0.10.0 [INFO] [stderr] Compiling clang-sys v0.28.0 [INFO] [stderr] Compiling num-integer v0.1.39 [INFO] [stderr] Checking unicode-normalization v0.1.8 [INFO] [stderr] Checking bit-set v0.5.1 [INFO] [stderr] Compiling proc-macro-hack v0.4.1 [INFO] [stderr] Compiling bitflags v1.2.1 [INFO] [stderr] Compiling backtrace v0.3.15 [INFO] [stderr] Checking crc32fast v1.2.0 [INFO] [stderr] Compiling newtype_derive v0.1.6 [INFO] [stderr] Compiling rustc-hash v1.0.1 [INFO] [stderr] Checking fxhash v0.2.1 [INFO] [stderr] Compiling libloading v0.5.0 [INFO] [stderr] Compiling bzip2-sys v0.1.7 [INFO] [stderr] Compiling backtrace-sys v0.1.28 [INFO] [stderr] Compiling lzma-sys v0.1.14 [INFO] [stderr] Compiling libz-sys v1.0.25 [INFO] [stderr] Compiling quote v1.0.2 [INFO] [stderr] Compiling quote v0.6.12 [INFO] [stderr] Checking crossbeam-epoch v0.3.1 [INFO] [stderr] Checking rand v0.4.6 [INFO] [stderr] Checking num_cpus v1.10.0 [INFO] [stderr] Checking flate2 v1.0.13 [INFO] [stderr] Compiling atty v0.2.11 [INFO] [stderr] Compiling which v3.1.0 [INFO] [stderr] Checking itertools-num v0.1.3 [INFO] [stderr] Checking ordered-float v1.0.2 [INFO] [stderr] Checking approx v0.3.2 [INFO] [stderr] Checking crossbeam-deque v0.2.0 [INFO] [stderr] Checking aho-corasick v0.7.6 [INFO] [stderr] Checking csv-core v0.1.5 [INFO] [stderr] Checking idna v0.1.5 [INFO] [stderr] Compiling mashup-impl v0.1.9 [INFO] [stderr] Checking rand v0.3.23 [INFO] [stderr] Checking statrs v0.9.0 [INFO] [stderr] Checking url v1.7.2 [INFO] [stderr] Checking regex v1.3.1 [INFO] [stderr] Checking mashup v0.1.9 [INFO] [stderr] Compiling cexpr v0.3.5 [INFO] [stderr] Compiling env_logger v0.6.1 [INFO] [stderr] Compiling pyo3 v0.6.0 [INFO] [stderr] error: failed to run custom build command for `pyo3 v0.6.0` [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] process didn't exit successfully: `/opt/rustwide/target/debug/build/pyo3-8adaa41537b2216a/build-script-build` (exit code: 101) [INFO] [stderr] --- stderr [INFO] [stderr] Error: pyo3 requires a nightly or dev version of Rust. [INFO] [stderr] Installed version is: 1.47.0-beta.2 (2020-08-28). Minimum required: 1.34.0-nightly (2019-02-06). [INFO] [stderr] thread 'main' panicked at 'Aborting compilation due to incompatible compiler.', /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/pyo3-0.6.0/build.rs:540:17 [INFO] [stderr] stack backtrace: [INFO] [stderr] 0: 0x5631939949a0 - std::backtrace_rs::backtrace::libunwind::trace::h9e3e6d9b3369e699 [INFO] [stderr] at /rustc/84b047bf64dfcfa12867781e9c23dfa4f2e6082c/library/std/src/../../backtrace/src/backtrace/libunwind.rs:96 [INFO] [stderr] 1: 0x5631939949a0 - std::backtrace_rs::backtrace::trace_unsynchronized::he58aba3ac08ed12a [INFO] [stderr] at /rustc/84b047bf64dfcfa12867781e9c23dfa4f2e6082c/library/std/src/../../backtrace/src/backtrace/mod.rs:66 [INFO] [stderr] 2: 0x5631939949a0 - std::sys_common::backtrace::_print_fmt::hbbbd4c92d537cef4 [INFO] [stderr] at /rustc/84b047bf64dfcfa12867781e9c23dfa4f2e6082c/library/std/src/sys_common/backtrace.rs:79 [INFO] [stderr] 3: 0x5631939949a0 - ::fmt::h80c2ae080004cc83 [INFO] [stderr] at /rustc/84b047bf64dfcfa12867781e9c23dfa4f2e6082c/library/std/src/sys_common/backtrace.rs:58 [INFO] [stderr] 4: 0x5631939b27ac - core::fmt::write::h0c11e16fd03fe660 [INFO] [stderr] at /rustc/84b047bf64dfcfa12867781e9c23dfa4f2e6082c/library/core/src/fmt/mod.rs:1082 [INFO] [stderr] 5: 0x563193991f07 - std::io::Write::write_fmt::h2e2072ff86131fcd [INFO] [stderr] at /rustc/84b047bf64dfcfa12867781e9c23dfa4f2e6082c/library/std/src/io/mod.rs:1514 [INFO] [stderr] 6: 0x563193996aa0 - std::sys_common::backtrace::_print::h165e6476adb4cb58 [INFO] [stderr] at /rustc/84b047bf64dfcfa12867781e9c23dfa4f2e6082c/library/std/src/sys_common/backtrace.rs:61 [INFO] [stderr] 7: 0x563193996aa0 - std::sys_common::backtrace::print::hbbfa32a92cd1fc34 [INFO] [stderr] at /rustc/84b047bf64dfcfa12867781e9c23dfa4f2e6082c/library/std/src/sys_common/backtrace.rs:48 [INFO] [stderr] 8: 0x563193996aa0 - std::panicking::default_hook::{{closure}}::h3a02067ca7f64068 [INFO] [stderr] at /rustc/84b047bf64dfcfa12867781e9c23dfa4f2e6082c/library/std/src/panicking.rs:200 [INFO] [stderr] 9: 0x5631939967ec - std::panicking::default_hook::ha3137d6f4e961fe2 [INFO] [stderr] at /rustc/84b047bf64dfcfa12867781e9c23dfa4f2e6082c/library/std/src/panicking.rs:219 [INFO] [stderr] 10: 0x563193997103 - std::panicking::rust_panic_with_hook::he6505c3b9d82db8b [INFO] [stderr] at /rustc/84b047bf64dfcfa12867781e9c23dfa4f2e6082c/library/std/src/panicking.rs:569 [INFO] [stderr] 11: 0x5631938ef90c - std::panicking::begin_panic::{{closure}}::h640857f4b167818b [INFO] [stderr] at /rustc/84b047bf64dfcfa12867781e9c23dfa4f2e6082c/library/std/src/panicking.rs:498 [INFO] [stderr] 12: 0x5631938def99 - std::sys_common::backtrace::__rust_end_short_backtrace::hf65ffae4922c9977 [INFO] [stderr] at /rustc/84b047bf64dfcfa12867781e9c23dfa4f2e6082c/library/std/src/sys_common/backtrace.rs:153 [INFO] [stderr] 13: 0x5631938ef837 - std::panicking::begin_panic::h3c7bf09c127a202f [INFO] [stderr] at /rustc/84b047bf64dfcfa12867781e9c23dfa4f2e6082c/library/std/src/panicking.rs:497 [INFO] [stderr] 14: 0x563193777544 - build_script_build::check_rustc_version::h99d485e8fa024670 [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/pyo3-0.6.0/build.rs:540 [INFO] [stderr] 15: 0x563193777be7 - build_script_build::main::hb4296e73c253fc20 [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/pyo3-0.6.0/build.rs:564 [INFO] [stderr] 16: 0x56319377df92 - core::ops::function::FnOnce::call_once::h37c754e59fa1f33e [INFO] [stderr] at /rustc/84b047bf64dfcfa12867781e9c23dfa4f2e6082c/library/core/src/ops/function.rs:227 [INFO] [stderr] 17: 0x56319378f4da - std::sys_common::backtrace::__rust_begin_short_backtrace::ha8c2a97448794817 [INFO] [stderr] at /rustc/84b047bf64dfcfa12867781e9c23dfa4f2e6082c/library/std/src/sys_common/backtrace.rs:137 [INFO] [stderr] 18: 0x56319378c4a6 - std::rt::lang_start::{{closure}}::h6ebb22f4a06f0745 [INFO] [stderr] at /rustc/84b047bf64dfcfa12867781e9c23dfa4f2e6082c/library/std/src/rt.rs:66 [INFO] [stderr] 19: 0x563193997501 - core::ops::function::impls:: for &F>::call_once::hdabbbe0d2c6ccde8 [INFO] [stderr] at /rustc/84b047bf64dfcfa12867781e9c23dfa4f2e6082c/library/core/src/ops/function.rs:259 [INFO] [stderr] 20: 0x563193997501 - std::panicking::try::do_call::h0c8c1cd19bf9d385 [INFO] [stderr] at /rustc/84b047bf64dfcfa12867781e9c23dfa4f2e6082c/library/std/src/panicking.rs:373 [INFO] [stderr] 21: 0x563193997501 - std::panicking::try::h357e78da017bc4a8 [INFO] [stderr] at /rustc/84b047bf64dfcfa12867781e9c23dfa4f2e6082c/library/std/src/panicking.rs:337 [INFO] [stderr] 22: 0x563193997501 - std::panic::catch_unwind::h72f31b36adf61841 [INFO] [stderr] at /rustc/84b047bf64dfcfa12867781e9c23dfa4f2e6082c/library/std/src/panic.rs:379 [INFO] [stderr] 23: 0x563193997501 - std::rt::lang_start_internal::h634502e153211333 [INFO] [stderr] at /rustc/84b047bf64dfcfa12867781e9c23dfa4f2e6082c/library/std/src/rt.rs:51 [INFO] [stderr] 24: 0x56319378c477 - std::rt::lang_start::h803a4b48afc0298e [INFO] [stderr] at /rustc/84b047bf64dfcfa12867781e9c23dfa4f2e6082c/library/std/src/rt.rs:65 [INFO] [stderr] 25: 0x5631937791aa - main [INFO] [stderr] 26: 0x7fb4f44d20b3 - __libc_start_main [INFO] [stderr] 27: 0x5631937700ae - _start [INFO] [stderr] 28: 0x0 - [INFO] [stderr] warning: build failed, waiting for other jobs to finish... [INFO] [stderr] error: build failed [INFO] running `Command { std: "docker" "inspect" "853c2b433dd20a5401347c3f2457ae810aa94bfdf40e7ce241af66e6ed4d06a5", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "853c2b433dd20a5401347c3f2457ae810aa94bfdf40e7ce241af66e6ed4d06a5", kill_on_drop: false }` [INFO] [stdout] 853c2b433dd20a5401347c3f2457ae810aa94bfdf40e7ce241af66e6ed4d06a5