[INFO] fetching crate openmm-sys 7.4.1... [INFO] documenting openmm-sys-7.4.1 against 1.46.0 for beta-1.47-rustdoc-1 [INFO] extracting crate openmm-sys 7.4.1 into /workspace/builds/worker-0/source [INFO] validating manifest of crates.io crate openmm-sys 7.4.1 on toolchain 1.46.0 [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+1.46.0" "read-manifest" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] started tweaking crates.io crate openmm-sys 7.4.1 [INFO] finished tweaking crates.io crate openmm-sys 7.4.1 [INFO] tweaked toml for crates.io crate openmm-sys 7.4.1 written to /workspace/builds/worker-0/source/Cargo.toml [INFO] crate crates.io crate openmm-sys 7.4.1 already has a lockfile, it will not be regenerated [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+1.46.0" "fetch" "--locked" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:d92eaeed33fa75130ca1ee6c8a01d1ffb62bac859dfdfb3450e3e5d1c0146529" "/opt/rustwide/cargo-home/bin/cargo" "+1.46.0" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 445ce2ded211da60a8a0daaa07afb3e7af524ab29bd8fe9a1ac6120465e45c73 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "445ce2ded211da60a8a0daaa07afb3e7af524ab29bd8fe9a1ac6120465e45c73", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "445ce2ded211da60a8a0daaa07afb3e7af524ab29bd8fe9a1ac6120465e45c73", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "445ce2ded211da60a8a0daaa07afb3e7af524ab29bd8fe9a1ac6120465e45c73", kill_on_drop: false }` [INFO] [stdout] 445ce2ded211da60a8a0daaa07afb3e7af524ab29bd8fe9a1ac6120465e45c73 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:d92eaeed33fa75130ca1ee6c8a01d1ffb62bac859dfdfb3450e3e5d1c0146529" "/opt/rustwide/cargo-home/bin/cargo" "+1.46.0" "doc" "--frozen" "--no-deps" "--document-private-items" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 8600f1596982fbfa56e2946d22b4c86c0566208a0d2a130aa8a0f74bae16c70b [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "8600f1596982fbfa56e2946d22b4c86c0566208a0d2a130aa8a0f74bae16c70b", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Compiling cc v1.0.59 [INFO] [stderr] Compiling cmake v0.1.44 [INFO] [stderr] Compiling openmm-sys v7.4.1 (/opt/rustwide/workdir) [INFO] [stderr] The following warnings were emitted during compilation: [INFO] [stderr] [INFO] [stderr] warning: [OpenMM-sys] Dynamically linking against the OpenMM library. [INFO] [stderr] [INFO] [stderr] error: failed to run custom build command for `openmm-sys v7.4.1 (/opt/rustwide/workdir)` [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] process didn't exit successfully: `/opt/rustwide/target/debug/build/openmm-sys-7334be1607793476/build-script-build` (exit code: 101) [INFO] [stderr] --- stdout [INFO] [stderr] cargo:warning=[OpenMM-sys] Dynamically linking against the OpenMM library. [INFO] [stderr] running: "cmake" "/opt/rustwide/workdir/openmm" "-DOPENMM_BUILD_PYTHON_WRAPPERS=OFF" "-DCMAKE_INSTALL_PREFIX=/opt/rustwide/target/debug/build/openmm-sys-b1c48e2b8081a13d/out" "-DCMAKE_C_FLAGS= -ffunction-sections -fdata-sections -fPIC -m64" "-DCMAKE_C_COMPILER=/usr/bin/cc" "-DCMAKE_CXX_FLAGS= -ffunction-sections -fdata-sections -fPIC -m64" "-DCMAKE_CXX_COMPILER=/usr/bin/c++" "-DCMAKE_ASM_FLAGS= -ffunction-sections -fdata-sections -fPIC -m64" "-DCMAKE_ASM_COMPILER=/usr/bin/cc" "-DCMAKE_BUILD_TYPE=Release" [INFO] [stderr] -- Found PythonInterp: /usr/bin/python (found version "2.7.18") [INFO] [stderr] -- The C compiler identification is GNU 9.3.0 [INFO] [stderr] -- The CXX compiler identification is GNU 9.3.0 [INFO] [stderr] -- Check for working C compiler: /usr/bin/cc [INFO] [stderr] -- Check for working C compiler: /usr/bin/cc -- works [INFO] [stderr] -- Detecting C compiler ABI info [INFO] [stderr] -- Detecting C compiler ABI info - done [INFO] [stderr] -- Detecting C compile features [INFO] [stderr] -- Detecting C compile features - done [INFO] [stderr] -- Check for working CXX compiler: /usr/bin/c++ [INFO] [stderr] -- Check for working CXX compiler: /usr/bin/c++ -- works [INFO] [stderr] -- Detecting CXX compiler ABI info [INFO] [stderr] -- Detecting CXX compiler ABI info - done [INFO] [stderr] -- Detecting CXX compile features [INFO] [stderr] -- Detecting CXX compile features - done [INFO] [stderr] -- Configuring incomplete, errors occurred! [INFO] [stderr] See also "/opt/rustwide/target/debug/build/openmm-sys-b1c48e2b8081a13d/out/build/CMakeFiles/CMakeOutput.log". [INFO] [stderr] [INFO] [stderr] --- stderr [INFO] [stderr] fatal: not a git repository (or any parent up to mount point /opt/rustwide) [INFO] [stderr] Stopping at filesystem boundary (GIT_DISCOVERY_ACROSS_FILESYSTEM not set). [INFO] [stderr] CMake Deprecation Warning at CMakeLists.txt:25 (CMAKE_POLICY): [INFO] [stderr] The OLD behavior for policy CMP0042 will be removed from a future version [INFO] [stderr] of CMake. [INFO] [stderr] [INFO] [stderr] The cmake-policies(7) manual explains that the OLD behaviors of all [INFO] [stderr] policies are deprecated and that a policy should be set to OLD only under [INFO] [stderr] specific short-term circumstances. Projects should be ported to the NEW [INFO] [stderr] behavior and not rely on setting a policy to OLD. [INFO] [stderr] [INFO] [stderr] [INFO] [stderr] CMake Error at /usr/share/cmake-3.16/Modules/FindPackageHandleStandardArgs.cmake:146 (message): [INFO] [stderr] Could NOT find Doxygen (missing: DOXYGEN_EXECUTABLE) [INFO] [stderr] Call Stack (most recent call first): [INFO] [stderr] /usr/share/cmake-3.16/Modules/FindPackageHandleStandardArgs.cmake:393 (_FPHSA_FAILURE_MESSAGE) [INFO] [stderr] /usr/share/cmake-3.16/Modules/FindDoxygen.cmake:633 (find_package_handle_standard_args) [INFO] [stderr] wrappers/CMakeLists.txt:1 (find_package) [INFO] [stderr] [INFO] [stderr] [INFO] [stderr] thread 'main' panicked at ' [INFO] [stderr] command did not execute successfully, got: exit code: 1 [INFO] [stderr] [INFO] [stderr] build script failed, must exit now', /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/cmake-0.1.44/src/lib.rs:885:5 [INFO] [stderr] stack backtrace: [INFO] [stderr] 0: 0x559b735cd035 - backtrace::backtrace::libunwind::trace::h14d338b30b3ea0a7 [INFO] [stderr] at /cargo/registry/src/github.com-1ecc6299db9ec823/backtrace-0.3.46/src/backtrace/libunwind.rs:86 [INFO] [stderr] 1: 0x559b735cd035 - backtrace::backtrace::trace_unsynchronized::h73ea91d74a3fd67f [INFO] [stderr] at /cargo/registry/src/github.com-1ecc6299db9ec823/backtrace-0.3.46/src/backtrace/mod.rs:66 [INFO] [stderr] 2: 0x559b735cd035 - std::sys_common::backtrace::_print_fmt::hd42948c952866e12 [INFO] [stderr] at src/libstd/sys_common/backtrace.rs:78 [INFO] [stderr] 3: 0x559b735cd035 - ::fmt::ha8f928866ff7571e [INFO] [stderr] at src/libstd/sys_common/backtrace.rs:59 [INFO] [stderr] 4: 0x559b735f1e5c - core::fmt::write::he0c1e5f7426d2718 [INFO] [stderr] at src/libcore/fmt/mod.rs:1076 [INFO] [stderr] 5: 0x559b735c9682 - std::io::Write::write_fmt::hf3afc6cfd57d0033 [INFO] [stderr] at src/libstd/io/mod.rs:1537 [INFO] [stderr] 6: 0x559b735cfae0 - std::sys_common::backtrace::_print::hfc0110703f3696fd [INFO] [stderr] at src/libstd/sys_common/backtrace.rs:62 [INFO] [stderr] 7: 0x559b735cfae0 - std::sys_common::backtrace::print::h3f77c6990ddfaa22 [INFO] [stderr] at src/libstd/sys_common/backtrace.rs:49 [INFO] [stderr] 8: 0x559b735cfae0 - std::panicking::default_hook::{{closure}}::heae49580a8d62d75 [INFO] [stderr] at src/libstd/panicking.rs:198 [INFO] [stderr] 9: 0x559b735cf82c - std::panicking::default_hook::hecc34e3f729e213c [INFO] [stderr] at src/libstd/panicking.rs:217 [INFO] [stderr] 10: 0x559b735d0123 - std::panicking::rust_panic_with_hook::he82f5d0644692441 [INFO] [stderr] at src/libstd/panicking.rs:526 [INFO] [stderr] 11: 0x559b735cfd1b - rust_begin_unwind [INFO] [stderr] at src/libstd/panicking.rs:437 [INFO] [stderr] 12: 0x559b735cfc8b - std::panicking::begin_panic_fmt::h905a6d44880d49ef [INFO] [stderr] at src/libstd/panicking.rs:391 [INFO] [stderr] 13: 0x559b735a50b7 - cmake::fail::hda817c3b0d2b6cb4 [INFO] [stderr] 14: 0x559b735a4cbe - cmake::run::hb2aaa5af58b18d19 [INFO] [stderr] 15: 0x559b735a2c75 - cmake::Config::build::h9d81fc6983d51de3 [INFO] [stderr] 16: 0x559b7359cd88 - build_script_build::main::h1d8093a9c8735539 [INFO] [stderr] 17: 0x559b7359d983 - std::rt::lang_start::{{closure}}::hddebd4f6b8ad91a1 [INFO] [stderr] 18: 0x559b735d04f3 - std::rt::lang_start_internal::{{closure}}::h5d3ea623498f5f43 [INFO] [stderr] at src/libstd/rt.rs:52 [INFO] [stderr] 19: 0x559b735d04f3 - std::panicking::try::do_call::hac65e71be769a440 [INFO] [stderr] at src/libstd/panicking.rs:348 [INFO] [stderr] 20: 0x559b735d04f3 - std::panicking::try::hd4706e264bcf6712 [INFO] [stderr] at src/libstd/panicking.rs:325 [INFO] [stderr] 21: 0x559b735d04f3 - std::panic::catch_unwind::h948a0fb4a8b3ee82 [INFO] [stderr] at src/libstd/panic.rs:394 [INFO] [stderr] 22: 0x559b735d04f3 - std::rt::lang_start_internal::h72cc068ed2d0ac53 [INFO] [stderr] at src/libstd/rt.rs:51 [INFO] [stderr] 23: 0x559b7359d752 - main [INFO] [stderr] 24: 0x7ff79dc1d0b3 - __libc_start_main [INFO] [stderr] 25: 0x559b7359a1ae - _start [INFO] [stderr] 26: 0x0 - [INFO] running `Command { std: "docker" "inspect" "8600f1596982fbfa56e2946d22b4c86c0566208a0d2a130aa8a0f74bae16c70b", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "8600f1596982fbfa56e2946d22b4c86c0566208a0d2a130aa8a0f74bae16c70b", kill_on_drop: false }` [INFO] [stdout] 8600f1596982fbfa56e2946d22b4c86c0566208a0d2a130aa8a0f74bae16c70b