[INFO] fetching crate neuro 0.1.0... [INFO] documenting neuro-0.1.0 against 1.46.0 for beta-1.47-rustdoc-1 [INFO] extracting crate neuro 0.1.0 into /workspace/builds/worker-9/source [INFO] validating manifest of crates.io crate neuro 0.1.0 on toolchain 1.46.0 [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+1.46.0" "read-manifest" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] started tweaking crates.io crate neuro 0.1.0 [INFO] finished tweaking crates.io crate neuro 0.1.0 [INFO] tweaked toml for crates.io crate neuro 0.1.0 written to /workspace/builds/worker-9/source/Cargo.toml [INFO] crate crates.io crate neuro 0.1.0 already has a lockfile, it will not be regenerated [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+1.46.0" "fetch" "--locked" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-9/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-9/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:d92eaeed33fa75130ca1ee6c8a01d1ffb62bac859dfdfb3450e3e5d1c0146529" "/opt/rustwide/cargo-home/bin/cargo" "+1.46.0" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] d9144383e490a1a84715dd10334fb2aa0d71fddead2a06e8523cd18c736eef4e [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "d9144383e490a1a84715dd10334fb2aa0d71fddead2a06e8523cd18c736eef4e", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "d9144383e490a1a84715dd10334fb2aa0d71fddead2a06e8523cd18c736eef4e", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "d9144383e490a1a84715dd10334fb2aa0d71fddead2a06e8523cd18c736eef4e", kill_on_drop: false }` [INFO] [stdout] d9144383e490a1a84715dd10334fb2aa0d71fddead2a06e8523cd18c736eef4e [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-9/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-9/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:d92eaeed33fa75130ca1ee6c8a01d1ffb62bac859dfdfb3450e3e5d1c0146529" "/opt/rustwide/cargo-home/bin/cargo" "+1.46.0" "doc" "--frozen" "--no-deps" "--document-private-items" "--message-format=json", kill_on_drop: false }` [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] [stdout] 8570da7244beb2e99d283b228b7335bfb77fa9afdf1a3a1b35c19c9152fe75bd [INFO] running `Command { std: "docker" "start" "-a" "8570da7244beb2e99d283b228b7335bfb77fa9afdf1a3a1b35c19c9152fe75bd", kill_on_drop: false }` [INFO] [stderr] Compiling regex-syntax v0.6.14 [INFO] [stderr] Compiling syn v1.0.16 [INFO] [stderr] Checking ascii v0.9.3 [INFO] [stderr] Checking number_prefix v0.3.0 [INFO] [stderr] Compiling num-integer v0.1.42 [INFO] [stderr] Checking miniz_oxide v0.3.6 [INFO] [stderr] Checking itertools v0.7.11 [INFO] [stderr] Compiling libc v0.2.67 [INFO] [stderr] Checking c2-chacha v0.2.3 [INFO] [stderr] Compiling serde v1.0.104 [INFO] [stderr] Checking clicolors-control v1.0.1 [INFO] [stderr] Checking termios v0.3.1 [INFO] [stderr] Checking getrandom v0.1.14 [INFO] [stderr] Checking aho-corasick v0.7.9 [INFO] [stderr] Checking csv-core v0.1.10 [INFO] [stderr] Compiling libloading v0.5.2 [INFO] [stderr] Checking regex-automata v0.1.8 [INFO] [stderr] Checking deflate v0.7.20 [INFO] [stderr] Checking num-complex v0.2.4 [INFO] [stderr] Checking rand_core v0.5.1 [INFO] [stderr] Checking hdf5-types v0.6.0 [INFO] [stderr] Compiling hdf5-derive v0.6.0 [INFO] [stderr] Checking tiff v0.4.0 [INFO] [stderr] Checking bstr v0.2.11 [INFO] [stderr] Checking crossbeam-epoch v0.8.2 [INFO] [stderr] Checking png v0.15.3 [INFO] [stderr] Checking rand_chacha v0.2.1 [INFO] [stderr] Checking crossbeam-deque v0.7.3 [INFO] [stderr] Checking rand v0.7.3 [INFO] [stderr] Checking ndarray v0.12.1 [INFO] [stderr] Checking csv v1.1.3 [INFO] [stderr] Checking rayon-core v1.7.0 [INFO] [stderr] Checking num-bigint v0.2.6 [INFO] [stderr] Checking num-iter v0.1.40 [INFO] [stderr] Checking rayon v1.3.0 [INFO] [stderr] Checking regex v1.3.4 [INFO] [stderr] Checking num-rational v0.2.3 [INFO] [stderr] Checking num v0.2.1 [INFO] [stderr] Checking console v0.9.2 [INFO] [stderr] Checking indicatif v0.14.0 [INFO] [stderr] Compiling serde_derive v1.0.104 [INFO] [stderr] Checking jpeg-decoder v0.1.18 [INFO] [stderr] Compiling hdf5-sys v0.6.0 [INFO] [stderr] Checking image v0.23.0 [INFO] [stderr] Compiling serde_json v1.0.48 [INFO] [stderr] error: failed to run custom build command for `hdf5-sys v0.6.0` [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] process didn't exit successfully: `/opt/rustwide/target/debug/build/hdf5-sys-666e3f3c154bc5fb/build-script-build` (exit code: 101) [INFO] [stderr] --- stdout [INFO] [stderr] Attempting to find HDF5 via pkg-config... [INFO] [stderr] [INFO] [stderr] --- stderr [INFO] [stderr] thread 'main' panicked at 'Unable to locate HDF5 root directory and/or headers.', /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hdf5-sys-0.6.0/build.rs:527:13 [INFO] [stderr] stack backtrace: [INFO] [stderr] 0: 0x55bbf9161745 - backtrace::backtrace::libunwind::trace::h14d338b30b3ea0a7 [INFO] [stderr] at /cargo/registry/src/github.com-1ecc6299db9ec823/backtrace-0.3.46/src/backtrace/libunwind.rs:86 [INFO] [stderr] 1: 0x55bbf9161745 - backtrace::backtrace::trace_unsynchronized::h73ea91d74a3fd67f [INFO] [stderr] at /cargo/registry/src/github.com-1ecc6299db9ec823/backtrace-0.3.46/src/backtrace/mod.rs:66 [INFO] [stderr] 2: 0x55bbf9161745 - std::sys_common::backtrace::_print_fmt::hd42948c952866e12 [INFO] [stderr] at src/libstd/sys_common/backtrace.rs:78 [INFO] [stderr] 3: 0x55bbf9161745 - ::fmt::ha8f928866ff7571e [INFO] [stderr] at src/libstd/sys_common/backtrace.rs:59 [INFO] [stderr] 4: 0x55bbf91850bc - core::fmt::write::he0c1e5f7426d2718 [INFO] [stderr] at src/libcore/fmt/mod.rs:1076 [INFO] [stderr] 5: 0x55bbf915e462 - std::io::Write::write_fmt::hf3afc6cfd57d0033 [INFO] [stderr] at src/libstd/io/mod.rs:1537 [INFO] [stderr] 6: 0x55bbf9163c60 - std::sys_common::backtrace::_print::hfc0110703f3696fd [INFO] [stderr] at src/libstd/sys_common/backtrace.rs:62 [INFO] [stderr] 7: 0x55bbf9163c60 - std::sys_common::backtrace::print::h3f77c6990ddfaa22 [INFO] [stderr] at src/libstd/sys_common/backtrace.rs:49 [INFO] [stderr] 8: 0x55bbf9163c60 - std::panicking::default_hook::{{closure}}::heae49580a8d62d75 [INFO] [stderr] at src/libstd/panicking.rs:198 [INFO] [stderr] 9: 0x55bbf91639ac - std::panicking::default_hook::hecc34e3f729e213c [INFO] [stderr] at src/libstd/panicking.rs:217 [INFO] [stderr] 10: 0x55bbf91642a3 - std::panicking::rust_panic_with_hook::he82f5d0644692441 [INFO] [stderr] at src/libstd/panicking.rs:526 [INFO] [stderr] 11: 0x55bbf9149dc9 - std::panicking::begin_panic::he0eab8a1cdae1873 [INFO] [stderr] at /rustc/04488afe34512aa4c33566eb16d8c912a3ae04f9/src/libstd/panicking.rs:456 [INFO] [stderr] 12: 0x55bbf8f454fc - build_script_build::LibrarySearcher::try_locate_hdf5_library::hc41fe7a11b6f65ca [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hdf5-sys-0.6.0/build.rs:527 [INFO] [stderr] 13: 0x55bbf8f468ac - build_script_build::main::hdf04ba2254897c22 [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hdf5-sys-0.6.0/build.rs:605 [INFO] [stderr] 14: 0x55bbf8f4b6ab - std::rt::lang_start::{{closure}}::h0695ed73680f81e3 [INFO] [stderr] at /rustc/04488afe34512aa4c33566eb16d8c912a3ae04f9/src/libstd/rt.rs:67 [INFO] [stderr] 15: 0x55bbf9164673 - std::rt::lang_start_internal::{{closure}}::h5d3ea623498f5f43 [INFO] [stderr] at src/libstd/rt.rs:52 [INFO] [stderr] 16: 0x55bbf9164673 - std::panicking::try::do_call::hac65e71be769a440 [INFO] [stderr] at src/libstd/panicking.rs:348 [INFO] [stderr] 17: 0x55bbf9164673 - std::panicking::try::hd4706e264bcf6712 [INFO] [stderr] at src/libstd/panicking.rs:325 [INFO] [stderr] 18: 0x55bbf9164673 - std::panic::catch_unwind::h948a0fb4a8b3ee82 [INFO] [stderr] at src/libstd/panic.rs:394 [INFO] [stderr] 19: 0x55bbf9164673 - std::rt::lang_start_internal::h72cc068ed2d0ac53 [INFO] [stderr] at src/libstd/rt.rs:51 [INFO] [stderr] 20: 0x55bbf8f4b687 - std::rt::lang_start::h70e4f5f1edd791db [INFO] [stderr] at /rustc/04488afe34512aa4c33566eb16d8c912a3ae04f9/src/libstd/rt.rs:67 [INFO] [stderr] 21: 0x55bbf8f473da - main [INFO] [stderr] 22: 0x7f480fd960b3 - __libc_start_main [INFO] [stderr] 23: 0x55bbf8f411ae - _start [INFO] [stderr] 24: 0x0 - [INFO] [stderr] warning: build failed, waiting for other jobs to finish... [INFO] [stderr] error: build failed [INFO] running `Command { std: "docker" "inspect" "8570da7244beb2e99d283b228b7335bfb77fa9afdf1a3a1b35c19c9152fe75bd", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "8570da7244beb2e99d283b228b7335bfb77fa9afdf1a3a1b35c19c9152fe75bd", kill_on_drop: false }` [INFO] [stdout] 8570da7244beb2e99d283b228b7335bfb77fa9afdf1a3a1b35c19c9152fe75bd