[INFO] fetching crate netcdf-src 0.1.3... [INFO] documenting netcdf-src-0.1.3 against 1.46.0 for beta-1.47-rustdoc-1 [INFO] extracting crate netcdf-src 0.1.3 into /workspace/builds/worker-9/source [INFO] validating manifest of crates.io crate netcdf-src 0.1.3 on toolchain 1.46.0 [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+1.46.0" "read-manifest" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] started tweaking crates.io crate netcdf-src 0.1.3 [INFO] finished tweaking crates.io crate netcdf-src 0.1.3 [INFO] tweaked toml for crates.io crate netcdf-src 0.1.3 written to /workspace/builds/worker-9/source/Cargo.toml [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+1.46.0" "generate-lockfile" "--manifest-path" "Cargo.toml" "-Zno-index-update", kill_on_drop: false }` [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+1.46.0" "fetch" "--locked" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-9/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-9/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:d92eaeed33fa75130ca1ee6c8a01d1ffb62bac859dfdfb3450e3e5d1c0146529" "/opt/rustwide/cargo-home/bin/cargo" "+1.46.0" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] [stdout] 440cee6c4d448932608f8025485543f197b3c33b950129e76acfaeb2c88f49cc [INFO] running `Command { std: "docker" "start" "-a" "440cee6c4d448932608f8025485543f197b3c33b950129e76acfaeb2c88f49cc", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "440cee6c4d448932608f8025485543f197b3c33b950129e76acfaeb2c88f49cc", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "440cee6c4d448932608f8025485543f197b3c33b950129e76acfaeb2c88f49cc", kill_on_drop: false }` [INFO] [stdout] 440cee6c4d448932608f8025485543f197b3c33b950129e76acfaeb2c88f49cc [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-9/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-9/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:d92eaeed33fa75130ca1ee6c8a01d1ffb62bac859dfdfb3450e3e5d1c0146529" "/opt/rustwide/cargo-home/bin/cargo" "+1.46.0" "doc" "--frozen" "--no-deps" "--document-private-items" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 0bcddd53cda3ae531e113b3c69e2281218f23b06a85632e4fa8120eaf91d1fa3 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "0bcddd53cda3ae531e113b3c69e2281218f23b06a85632e4fa8120eaf91d1fa3", kill_on_drop: false }` [INFO] [stderr] Compiling hdf5-src v0.7.0 [INFO] [stderr] Compiling netcdf-src v0.1.3 (/opt/rustwide/workdir) [INFO] [stderr] Compiling libz-sys v1.1.1 [INFO] [stderr] Compiling libloading v0.6.3 [INFO] [stderr] Compiling hdf5-sys v0.7.0 [INFO] [stderr] error: failed to run custom build command for `hdf5-sys v0.7.0` [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] process didn't exit successfully: `/opt/rustwide/target/debug/build/hdf5-sys-04641302423773ac/build-script-build` (exit code: 101) [INFO] [stderr] --- stdout [INFO] [stderr] Attempting to find HDF5 via pkg-config... [INFO] [stderr] cargo:rerun-if-env-changed=HDF5_NO_PKG_CONFIG [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG [INFO] [stderr] cargo:rerun-if-env-changed=HDF5_STATIC [INFO] [stderr] cargo:rerun-if-env-changed=HDF5_DYNAMIC [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_ALL_STATIC [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_ALL_DYNAMIC [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_PATH_x86_64-unknown-linux-gnu [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_PATH_x86_64_unknown_linux_gnu [INFO] [stderr] cargo:rerun-if-env-changed=HOST_PKG_CONFIG_PATH [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_PATH [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR_x86_64-unknown-linux-gnu [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR_x86_64_unknown_linux_gnu [INFO] [stderr] cargo:rerun-if-env-changed=HOST_PKG_CONFIG_LIBDIR [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR_x86_64-unknown-linux-gnu [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR_x86_64_unknown_linux_gnu [INFO] [stderr] cargo:rerun-if-env-changed=HOST_PKG_CONFIG_SYSROOT_DIR [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR [INFO] [stderr] [INFO] [stderr] --- stderr [INFO] [stderr] thread 'main' panicked at 'Unable to locate HDF5 root directory and/or headers.', /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hdf5-sys-0.7.0/build.rs:549:13 [INFO] [stderr] stack backtrace: [INFO] [stderr] 0: 0x55e03f5a7305 - backtrace::backtrace::libunwind::trace::h14d338b30b3ea0a7 [INFO] [stderr] at /cargo/registry/src/github.com-1ecc6299db9ec823/backtrace-0.3.46/src/backtrace/libunwind.rs:86 [INFO] [stderr] 1: 0x55e03f5a7305 - backtrace::backtrace::trace_unsynchronized::h73ea91d74a3fd67f [INFO] [stderr] at /cargo/registry/src/github.com-1ecc6299db9ec823/backtrace-0.3.46/src/backtrace/mod.rs:66 [INFO] [stderr] 2: 0x55e03f5a7305 - std::sys_common::backtrace::_print_fmt::hd42948c952866e12 [INFO] [stderr] at src/libstd/sys_common/backtrace.rs:78 [INFO] [stderr] 3: 0x55e03f5a7305 - ::fmt::ha8f928866ff7571e [INFO] [stderr] at src/libstd/sys_common/backtrace.rs:59 [INFO] [stderr] 4: 0x55e03f5cad5c - core::fmt::write::he0c1e5f7426d2718 [INFO] [stderr] at src/libcore/fmt/mod.rs:1076 [INFO] [stderr] 5: 0x55e03f5a4022 - std::io::Write::write_fmt::hf3afc6cfd57d0033 [INFO] [stderr] at src/libstd/io/mod.rs:1537 [INFO] [stderr] 6: 0x55e03f5a9820 - std::sys_common::backtrace::_print::hfc0110703f3696fd [INFO] [stderr] at src/libstd/sys_common/backtrace.rs:62 [INFO] [stderr] 7: 0x55e03f5a9820 - std::sys_common::backtrace::print::h3f77c6990ddfaa22 [INFO] [stderr] at src/libstd/sys_common/backtrace.rs:49 [INFO] [stderr] 8: 0x55e03f5a9820 - std::panicking::default_hook::{{closure}}::heae49580a8d62d75 [INFO] [stderr] at src/libstd/panicking.rs:198 [INFO] [stderr] 9: 0x55e03f5a956c - std::panicking::default_hook::hecc34e3f729e213c [INFO] [stderr] at src/libstd/panicking.rs:217 [INFO] [stderr] 10: 0x55e03f5a9e63 - std::panicking::rust_panic_with_hook::he82f5d0644692441 [INFO] [stderr] at src/libstd/panicking.rs:526 [INFO] [stderr] 11: 0x55e03f58f519 - std::panicking::begin_panic::he0eab8a1cdae1873 [INFO] [stderr] at /rustc/04488afe34512aa4c33566eb16d8c912a3ae04f9/src/libstd/panicking.rs:456 [INFO] [stderr] 12: 0x55e03f3893ec - build_script_build::LibrarySearcher::try_locate_hdf5_library::h52f8e8646506d08d [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hdf5-sys-0.7.0/build.rs:549 [INFO] [stderr] 13: 0x55e03f38ad71 - build_script_build::main::h555064e10060423c [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hdf5-sys-0.7.0/build.rs:647 [INFO] [stderr] 14: 0x55e03f39683b - std::rt::lang_start::{{closure}}::h7ff5f3146492530d [INFO] [stderr] at /rustc/04488afe34512aa4c33566eb16d8c912a3ae04f9/src/libstd/rt.rs:67 [INFO] [stderr] 15: 0x55e03f5aa233 - std::rt::lang_start_internal::{{closure}}::h5d3ea623498f5f43 [INFO] [stderr] at src/libstd/rt.rs:52 [INFO] [stderr] 16: 0x55e03f5aa233 - std::panicking::try::do_call::hac65e71be769a440 [INFO] [stderr] at src/libstd/panicking.rs:348 [INFO] [stderr] 17: 0x55e03f5aa233 - std::panicking::try::hd4706e264bcf6712 [INFO] [stderr] at src/libstd/panicking.rs:325 [INFO] [stderr] 18: 0x55e03f5aa233 - std::panic::catch_unwind::h948a0fb4a8b3ee82 [INFO] [stderr] at src/libstd/panic.rs:394 [INFO] [stderr] 19: 0x55e03f5aa233 - std::rt::lang_start_internal::h72cc068ed2d0ac53 [INFO] [stderr] at src/libstd/rt.rs:51 [INFO] [stderr] 20: 0x55e03f396817 - std::rt::lang_start::hd61a7c989cabdba7 [INFO] [stderr] at /rustc/04488afe34512aa4c33566eb16d8c912a3ae04f9/src/libstd/rt.rs:67 [INFO] [stderr] 21: 0x55e03f38c49a - main [INFO] [stderr] 22: 0x7f4174b040b3 - __libc_start_main [INFO] [stderr] 23: 0x55e03f38419e - _start [INFO] [stderr] 24: 0x0 - [INFO] [stderr] warning: build failed, waiting for other jobs to finish... [INFO] [stderr] error: build failed [INFO] running `Command { std: "docker" "inspect" "0bcddd53cda3ae531e113b3c69e2281218f23b06a85632e4fa8120eaf91d1fa3", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "0bcddd53cda3ae531e113b3c69e2281218f23b06a85632e4fa8120eaf91d1fa3", kill_on_drop: false }` [INFO] [stdout] 0bcddd53cda3ae531e113b3c69e2281218f23b06a85632e4fa8120eaf91d1fa3