[INFO] fetching crate flann 0.1.0... [INFO] documenting flann-0.1.0 against 1.46.0 for beta-1.47-rustdoc-1 [INFO] extracting crate flann 0.1.0 into /workspace/builds/worker-9/source [INFO] validating manifest of crates.io crate flann 0.1.0 on toolchain 1.46.0 [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+1.46.0" "read-manifest" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] started tweaking crates.io crate flann 0.1.0 [INFO] finished tweaking crates.io crate flann 0.1.0 [INFO] tweaked toml for crates.io crate flann 0.1.0 written to /workspace/builds/worker-9/source/Cargo.toml [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+1.46.0" "generate-lockfile" "--manifest-path" "Cargo.toml" "-Zno-index-update", kill_on_drop: false }` [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+1.46.0" "fetch" "--locked" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-9/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-9/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:d92eaeed33fa75130ca1ee6c8a01d1ffb62bac859dfdfb3450e3e5d1c0146529" "/opt/rustwide/cargo-home/bin/cargo" "+1.46.0" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] [stdout] cc4b10d916d548d47b7bc342324ce2b545065890d7f076ec442d033cd4400e8d [INFO] running `Command { std: "docker" "start" "-a" "cc4b10d916d548d47b7bc342324ce2b545065890d7f076ec442d033cd4400e8d", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "cc4b10d916d548d47b7bc342324ce2b545065890d7f076ec442d033cd4400e8d", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "cc4b10d916d548d47b7bc342324ce2b545065890d7f076ec442d033cd4400e8d", kill_on_drop: false }` [INFO] [stdout] cc4b10d916d548d47b7bc342324ce2b545065890d7f076ec442d033cd4400e8d [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-9/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-9/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:d92eaeed33fa75130ca1ee6c8a01d1ffb62bac859dfdfb3450e3e5d1c0146529" "/opt/rustwide/cargo-home/bin/cargo" "+1.46.0" "doc" "--frozen" "--no-deps" "--document-private-items" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 89f41e8de6e03764fbaf187ee8521d6922bb6c8573a800eb79367013db7cae6e [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "89f41e8de6e03764fbaf187ee8521d6922bb6c8573a800eb79367013db7cae6e", kill_on_drop: false }` [INFO] [stderr] Compiling ucd-util v0.1.8 [INFO] [stderr] Compiling libloading v0.4.3 [INFO] [stderr] Compiling utf8-ranges v1.0.4 [INFO] [stderr] Compiling bindgen v0.32.3 [INFO] [stderr] Compiling clang-sys v0.21.2 [INFO] [stderr] Compiling thread_local v0.3.6 [INFO] [stderr] Compiling proc-macro2 v0.2.3 [INFO] [stderr] Compiling memchr v2.3.3 [INFO] [stderr] Compiling memchr v1.0.2 [INFO] [stderr] Compiling atty v0.2.14 [INFO] [stderr] Compiling which v1.0.5 [INFO] [stderr] Checking failure v0.1.8 [INFO] [stderr] Compiling clap v2.33.3 [INFO] [stderr] Compiling regex-syntax v0.5.6 [INFO] [stderr] Compiling nom v3.2.1 [INFO] [stderr] Compiling aho-corasick v0.6.10 [INFO] [stderr] Compiling quote v0.4.2 [INFO] [stderr] Compiling cexpr v0.2.3 [INFO] [stderr] Compiling regex v0.2.11 [INFO] [stderr] Compiling env_logger v0.4.3 [INFO] [stderr] Compiling flann-sys v0.1.0 [INFO] [stderr] error: failed to run custom build command for `flann-sys v0.1.0` [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] process didn't exit successfully: `/opt/rustwide/target/debug/build/flann-sys-61bbdafbd0ea350b/build-script-build` (exit code: 101) [INFO] [stderr] --- stdout [INFO] [stderr] cargo:rustc-link-lib=gomp [INFO] [stderr] cargo:rustc-link-lib=stdc++ [INFO] [stderr] running: "cmake" "/opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/flann-sys-0.1.0/flann" "-DBUILD_EXAMPLES=OFF" "-DBUILD_TESTS=OFF" "-DBUILD_DOC=OFF" "-DBUILD_PYTHON_BINDINGS=OFF" "-DBUILD_MATLAB_BINDINGS=OFF" "-DUSE_OPENMP=ON" "-DCMAKE_INSTALL_PREFIX=/opt/rustwide/target/debug/build/flann-sys-c0d90b81db3e96c3/out" "-DCMAKE_C_FLAGS= -ffunction-sections -fdata-sections -fPIC -m64" "-DCMAKE_C_COMPILER=/usr/bin/cc" "-DCMAKE_CXX_FLAGS= -ffunction-sections -fdata-sections -fPIC -m64" "-DCMAKE_CXX_COMPILER=/usr/bin/c++" "-DCMAKE_ASM_FLAGS= -ffunction-sections -fdata-sections -fPIC -m64" "-DCMAKE_ASM_COMPILER=/usr/bin/cc" "-DCMAKE_BUILD_TYPE=Debug" [INFO] [stderr] -- The C compiler identification is GNU 9.3.0 [INFO] [stderr] -- The CXX compiler identification is GNU 9.3.0 [INFO] [stderr] -- Check for working C compiler: /usr/bin/cc [INFO] [stderr] -- Check for working C compiler: /usr/bin/cc -- works [INFO] [stderr] -- Detecting C compiler ABI info [INFO] [stderr] -- Detecting C compiler ABI info - done [INFO] [stderr] -- Detecting C compile features [INFO] [stderr] -- Detecting C compile features - done [INFO] [stderr] -- Check for working CXX compiler: /usr/bin/c++ [INFO] [stderr] -- Check for working CXX compiler: /usr/bin/c++ -- works [INFO] [stderr] -- Detecting CXX compiler ABI info [INFO] [stderr] -- Detecting CXX compiler ABI info - done [INFO] [stderr] -- Detecting CXX compile features [INFO] [stderr] -- Detecting CXX compile features - done [INFO] [stderr] -- Found PythonInterp: /usr/bin/python (found version "2.7.18") [INFO] [stderr] -- Could NOT find HDF5 (missing: HDF5_LIBRARIES HDF5_INCLUDE_DIRS) (found version "") [INFO] [stderr] -- Could NOT find GTest (missing: GTEST_LIBRARY GTEST_INCLUDE_DIR GTEST_MAIN_LIBRARY) [INFO] [stderr] -- Found OpenMP_C: -fopenmp (found version "4.5") [INFO] [stderr] -- Found OpenMP_CXX: -fopenmp (found version "4.5") [INFO] [stderr] -- Found OpenMP: TRUE (found version "4.5") [INFO] [stderr] -- Install prefix: /opt/rustwide/target/debug/build/flann-sys-c0d90b81db3e96c3/out [INFO] [stderr] -- Build type: Debug [INFO] [stderr] -- Building C bindings: ON [INFO] [stderr] -- Building examples: OFF [INFO] [stderr] -- Building tests: OFF [INFO] [stderr] -- Building documentation: OFF [INFO] [stderr] -- Building python bindings: OFF [INFO] [stderr] -- Building matlab bindings: OFF [INFO] [stderr] -- Building CUDA library: OFF [INFO] [stderr] -- Using OpenMP support: ON [INFO] [stderr] -- Using MPI support: OFF [INFO] [stderr] -- Configuring incomplete, errors occurred! [INFO] [stderr] See also "/opt/rustwide/target/debug/build/flann-sys-c0d90b81db3e96c3/out/build/CMakeFiles/CMakeOutput.log". [INFO] [stderr] [INFO] [stderr] --- stderr [INFO] [stderr] CMake Warning at CMakeLists.txt:78 (message): [INFO] [stderr] hdf5 library not found, some tests will not be run [INFO] [stderr] [INFO] [stderr] [INFO] [stderr] CMake Warning at CMakeLists.txt:117 (message): [INFO] [stderr] gtest library not found, some tests will not be run [INFO] [stderr] [INFO] [stderr] [INFO] [stderr] CMake Error: Could not open file for write in copy operation /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/flann-sys-0.1.0/flann/src/cpp/flann/config.h.tmp [INFO] [stderr] CMake Error: : System Error: Read-only file system [INFO] [stderr] CMake Error at src/cpp/CMakeLists.txt:5 (configure_file): [INFO] [stderr] configure_file Problem configuring file [INFO] [stderr] [INFO] [stderr] [INFO] [stderr] thread 'main' panicked at ' [INFO] [stderr] command did not execute successfully, got: exit code: 1 [INFO] [stderr] [INFO] [stderr] build script failed, must exit now', /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/cmake-0.1.44/src/lib.rs:885:5 [INFO] [stderr] stack backtrace: [INFO] [stderr] 0: 0x55ca38bfac15 - backtrace::backtrace::libunwind::trace::h14d338b30b3ea0a7 [INFO] [stderr] at /cargo/registry/src/github.com-1ecc6299db9ec823/backtrace-0.3.46/src/backtrace/libunwind.rs:86 [INFO] [stderr] 1: 0x55ca38bfac15 - backtrace::backtrace::trace_unsynchronized::h73ea91d74a3fd67f [INFO] [stderr] at /cargo/registry/src/github.com-1ecc6299db9ec823/backtrace-0.3.46/src/backtrace/mod.rs:66 [INFO] [stderr] 2: 0x55ca38bfac15 - std::sys_common::backtrace::_print_fmt::hd42948c952866e12 [INFO] [stderr] at src/libstd/sys_common/backtrace.rs:78 [INFO] [stderr] 3: 0x55ca38bfac15 - ::fmt::ha8f928866ff7571e [INFO] [stderr] at src/libstd/sys_common/backtrace.rs:59 [INFO] [stderr] 4: 0x55ca38c25b2c - core::fmt::write::he0c1e5f7426d2718 [INFO] [stderr] at src/libcore/fmt/mod.rs:1076 [INFO] [stderr] 5: 0x55ca38bf6d22 - std::io::Write::write_fmt::hf3afc6cfd57d0033 [INFO] [stderr] at src/libstd/io/mod.rs:1537 [INFO] [stderr] 6: 0x55ca38bfd930 - std::sys_common::backtrace::_print::hfc0110703f3696fd [INFO] [stderr] at src/libstd/sys_common/backtrace.rs:62 [INFO] [stderr] 7: 0x55ca38bfd930 - std::sys_common::backtrace::print::h3f77c6990ddfaa22 [INFO] [stderr] at src/libstd/sys_common/backtrace.rs:49 [INFO] [stderr] 8: 0x55ca38bfd930 - std::panicking::default_hook::{{closure}}::heae49580a8d62d75 [INFO] [stderr] at src/libstd/panicking.rs:198 [INFO] [stderr] 9: 0x55ca38bfd67c - std::panicking::default_hook::hecc34e3f729e213c [INFO] [stderr] at src/libstd/panicking.rs:217 [INFO] [stderr] 10: 0x55ca38bfdf73 - std::panicking::rust_panic_with_hook::he82f5d0644692441 [INFO] [stderr] at src/libstd/panicking.rs:526 [INFO] [stderr] 11: 0x55ca38bfdb6b - rust_begin_unwind [INFO] [stderr] at src/libstd/panicking.rs:437 [INFO] [stderr] 12: 0x55ca38bfdadb - std::panicking::begin_panic_fmt::h905a6d44880d49ef [INFO] [stderr] at src/libstd/panicking.rs:391 [INFO] [stderr] 13: 0x55ca386c9497 - cmake::fail::hf486b18c8a2e58cb [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/cmake-0.1.44/src/lib.rs:885 [INFO] [stderr] 14: 0x55ca386c8dde - cmake::run::h0f10da4b12561b0c [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/cmake-0.1.44/src/lib.rs:863 [INFO] [stderr] 15: 0x55ca386c4797 - cmake::Config::build::he427d17d961d384f [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/cmake-0.1.44/src/lib.rs:698 [INFO] [stderr] 16: 0x55ca386bf4e6 - build_script_build::main::hf8071783f85af2f2 [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/flann-sys-0.1.0/build.rs:30 [INFO] [stderr] 17: 0x55ca386c190b - std::rt::lang_start::{{closure}}::hb61115986a594dd8 [INFO] [stderr] at /rustc/04488afe34512aa4c33566eb16d8c912a3ae04f9/src/libstd/rt.rs:67 [INFO] [stderr] 18: 0x55ca38bfe343 - std::rt::lang_start_internal::{{closure}}::h5d3ea623498f5f43 [INFO] [stderr] at src/libstd/rt.rs:52 [INFO] [stderr] 19: 0x55ca38bfe343 - std::panicking::try::do_call::hac65e71be769a440 [INFO] [stderr] at src/libstd/panicking.rs:348 [INFO] [stderr] 20: 0x55ca38bfe343 - std::panicking::try::hd4706e264bcf6712 [INFO] [stderr] at src/libstd/panicking.rs:325 [INFO] [stderr] 21: 0x55ca38bfe343 - std::panic::catch_unwind::h948a0fb4a8b3ee82 [INFO] [stderr] at src/libstd/panic.rs:394 [INFO] [stderr] 22: 0x55ca38bfe343 - std::rt::lang_start_internal::h72cc068ed2d0ac53 [INFO] [stderr] at src/libstd/rt.rs:51 [INFO] [stderr] 23: 0x55ca386c18e7 - std::rt::lang_start::h14fe58b2fcf54bce [INFO] [stderr] at /rustc/04488afe34512aa4c33566eb16d8c912a3ae04f9/src/libstd/rt.rs:67 [INFO] [stderr] 24: 0x55ca386bf8ea - main [INFO] [stderr] 25: 0x7f991728c0b3 - __libc_start_main [INFO] [stderr] 26: 0x55ca386bf19e - _start [INFO] [stderr] 27: 0x0 - [INFO] running `Command { std: "docker" "inspect" "89f41e8de6e03764fbaf187ee8521d6922bb6c8573a800eb79367013db7cae6e", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "89f41e8de6e03764fbaf187ee8521d6922bb6c8573a800eb79367013db7cae6e", kill_on_drop: false }` [INFO] [stdout] 89f41e8de6e03764fbaf187ee8521d6922bb6c8573a800eb79367013db7cae6e