[INFO] cloning repository https://github.com/Mimerme/Mimerme [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/Mimerme/Mimerme" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FMimerme%2FMimerme", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FMimerme%2FMimerme'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] df63a69dd00123b2eb2ab3520f84fe54a79a107d [INFO] documenting Mimerme/Mimerme against 1.46.0 for beta-1.47-rustdoc-1 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FMimerme%2FMimerme" "/workspace/builds/worker-4/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-4/source'... [INFO] [stderr] done. [INFO] validating manifest of git repo https://github.com/Mimerme/Mimerme on toolchain 1.46.0 [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+1.46.0" "read-manifest" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] started tweaking git repo https://github.com/Mimerme/Mimerme [INFO] finished tweaking git repo https://github.com/Mimerme/Mimerme [INFO] tweaked toml for git repo https://github.com/Mimerme/Mimerme written to /workspace/builds/worker-4/source/Cargo.toml [INFO] crate git repo https://github.com/Mimerme/Mimerme already has a lockfile, it will not be regenerated [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+1.46.0" "fetch" "--locked" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:d92eaeed33fa75130ca1ee6c8a01d1ffb62bac859dfdfb3450e3e5d1c0146529" "/opt/rustwide/cargo-home/bin/cargo" "+1.46.0" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 36dd6741fce68466b679743fa1b32ed7afd026e82311cd730c6d6427df5f057f [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "36dd6741fce68466b679743fa1b32ed7afd026e82311cd730c6d6427df5f057f", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "36dd6741fce68466b679743fa1b32ed7afd026e82311cd730c6d6427df5f057f", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "36dd6741fce68466b679743fa1b32ed7afd026e82311cd730c6d6427df5f057f", kill_on_drop: false }` [INFO] [stdout] 36dd6741fce68466b679743fa1b32ed7afd026e82311cd730c6d6427df5f057f [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:d92eaeed33fa75130ca1ee6c8a01d1ffb62bac859dfdfb3450e3e5d1c0146529" "/opt/rustwide/cargo-home/bin/cargo" "+1.46.0" "doc" "--frozen" "--no-deps" "--document-private-items" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 664b0d153fb72aef725dbb562dad67c9bb01abf411e82ba5ba0311fb652d1938 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "664b0d153fb72aef725dbb562dad67c9bb01abf411e82ba5ba0311fb652d1938", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Compiling proc-macro2 v1.0.9 [INFO] [stderr] Compiling memchr v2.3.3 [INFO] [stderr] Compiling cc v1.0.50 [INFO] [stderr] Compiling syn v1.0.17 [INFO] [stderr] Compiling libc v0.2.68 [INFO] [stderr] Compiling glob v0.3.0 [INFO] [stderr] Compiling bindgen v0.53.2 [INFO] [stderr] Compiling regex-syntax v0.6.17 [INFO] [stderr] Compiling quick-error v1.2.3 [INFO] [stderr] Compiling rustc-hash v1.1.0 [INFO] [stderr] Compiling lazycell v1.2.1 [INFO] [stderr] Compiling serde v1.0.105 [INFO] [stderr] Compiling doc-comment v0.3.3 [INFO] [stderr] Checking smallvec v1.2.0 [INFO] [stderr] Checking custom_derive v0.1.7 [INFO] [stderr] Checking linear-map v1.2.0 [INFO] [stderr] Checking ieee754 v0.2.6 [INFO] [stderr] Compiling nom v5.1.1 [INFO] [stderr] Compiling thread_local v1.0.1 [INFO] [stderr] Checking itertools v0.8.2 [INFO] [stderr] Compiling fs-utils v1.1.4 [INFO] [stderr] Checking unicode-normalization v0.1.12 [INFO] [stderr] Compiling newtype_derive v0.1.6 [INFO] [stderr] Compiling clang-sys v0.29.2 [INFO] [stderr] Compiling aho-corasick v0.7.10 [INFO] [stderr] Compiling quote v1.0.3 [INFO] [stderr] Compiling libloading v0.5.2 [INFO] [stderr] Compiling libz-sys v1.0.25 [INFO] [stderr] Checking idna v0.2.0 [INFO] [stderr] Checking url v2.1.1 [INFO] [stderr] Compiling regex v1.3.6 [INFO] [stderr] Compiling cexpr v0.4.0 [INFO] [stderr] Compiling serde_derive v1.0.105 [INFO] [stderr] Compiling snafu-derive v0.6.3 [INFO] [stderr] Compiling derive-new v0.5.8 [INFO] [stderr] Checking snafu v0.6.0 [INFO] [stderr] Compiling hts-sys v1.10.2 [INFO] [stderr] Checking bio-types v0.6.0 [INFO] [stderr] Checking bincode v1.2.1 [INFO] [stderr] error: failed to run custom build command for `hts-sys v1.10.2` [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] process didn't exit successfully: `/opt/rustwide/target/debug/build/hts-sys-e2a6528944dcb5a4/build-script-build` (exit code: 101) [INFO] [stderr] --- stdout [INFO] [stderr] OPT_LEVEL = Some("0") [INFO] [stderr] TARGET = Some("x86_64-unknown-linux-gnu") [INFO] [stderr] HOST = Some("x86_64-unknown-linux-gnu") [INFO] [stderr] CC_x86_64-unknown-linux-gnu = None [INFO] [stderr] CC_x86_64_unknown_linux_gnu = None [INFO] [stderr] HOST_CC = None [INFO] [stderr] CC = None [INFO] [stderr] CFLAGS_x86_64-unknown-linux-gnu = None [INFO] [stderr] CFLAGS_x86_64_unknown_linux_gnu = None [INFO] [stderr] HOST_CFLAGS = None [INFO] [stderr] CFLAGS = None [INFO] [stderr] CRATE_CC_NO_DEFAULTS = None [INFO] [stderr] DEBUG = Some("true") [INFO] [stderr] echo '/* Default config.h generated by Makefile */' > config.h [INFO] [stderr] echo '#ifndef __APPLE__' >> config.h [INFO] [stderr] echo '#define HAVE_LZMA_H 1' >> config.h [INFO] [stderr] echo '#endif' >> config.h [INFO] [stderr] echo '#define HAVE_DRAND48 1' >> config.h [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I. -c -o kfunc.o kfunc.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I. -c -o knetfile.o knetfile.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I. -c -o kstring.o kstring.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I. -c -o bcf_sr_sort.o bcf_sr_sort.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I. -c -o bgzf.o bgzf.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I. -c -o errmod.o errmod.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I. -c -o faidx.o faidx.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I. -c -o header.o header.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I. -c -o hfile.o hfile.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I. -c -o hfile_net.o hfile_net.c [INFO] [stderr] echo '#define HTS_VERSION_TEXT "1.10.2"' > version.h [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I. -c -o hts.o hts.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I. -c -o hts_os.o hts_os.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I. -c -o md5.o md5.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I. -c -o multipart.o multipart.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I. -c -o probaln.o probaln.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I. -c -o realn.o realn.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I. -c -o regidx.o regidx.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I. -c -o region.o region.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I. -c -o sam.o sam.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I. -c -o synced_bcf_reader.o synced_bcf_reader.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I. -c -o vcf_sweep.o vcf_sweep.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I. -c -o tbx.o tbx.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I. -c -o textutils.o textutils.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I. -c -o thread_pool.o thread_pool.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I. -c -o vcf.o vcf.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I. -c -o vcfutils.o vcfutils.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I. -c -o cram/cram_codecs.o cram/cram_codecs.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I. -c -o cram/cram_decode.o cram/cram_decode.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I. -c -o cram/cram_encode.o cram/cram_encode.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I. -c -o cram/cram_external.o cram/cram_external.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I. -c -o cram/cram_index.o cram/cram_index.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I. -c -o cram/cram_io.o cram/cram_io.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I. -c -o cram/cram_samtools.o cram/cram_samtools.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I. -c -o cram/cram_stats.o cram/cram_stats.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I. -c -o cram/mFILE.o cram/mFILE.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I. -c -o cram/open_trace_file.o cram/open_trace_file.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I. -c -o cram/pooled_alloc.o cram/pooled_alloc.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I. -c -o cram/rANS_static.o cram/rANS_static.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I. -c -o cram/string_alloc.o cram/string_alloc.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I. -c -o hfile_libcurl.o hfile_libcurl.c [INFO] [stderr] [INFO] [stderr] --- stderr [INFO] [stderr] hfile_libcurl.c:47:10: fatal error: curl/curl.h: No such file or directory [INFO] [stderr] 47 | #include [INFO] [stderr] | ^~~~~~~~~~~~~ [INFO] [stderr] compilation terminated. [INFO] [stderr] make: *** [Makefile:133: hfile_libcurl.o] Error 1 [INFO] [stderr] thread 'main' panicked at 'failed to build htslib', /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hts-sys-1.10.2/build.rs:86:9 [INFO] [stderr] stack backtrace: [INFO] [stderr] 0: 0x56286e2f4d35 - backtrace::backtrace::libunwind::trace::h14d338b30b3ea0a7 [INFO] [stderr] at /cargo/registry/src/github.com-1ecc6299db9ec823/backtrace-0.3.46/src/backtrace/libunwind.rs:86 [INFO] [stderr] 1: 0x56286e2f4d35 - backtrace::backtrace::trace_unsynchronized::h73ea91d74a3fd67f [INFO] [stderr] at /cargo/registry/src/github.com-1ecc6299db9ec823/backtrace-0.3.46/src/backtrace/mod.rs:66 [INFO] [stderr] 2: 0x56286e2f4d35 - std::sys_common::backtrace::_print_fmt::hd42948c952866e12 [INFO] [stderr] at src/libstd/sys_common/backtrace.rs:78 [INFO] [stderr] 3: 0x56286e2f4d35 - ::fmt::ha8f928866ff7571e [INFO] [stderr] at src/libstd/sys_common/backtrace.rs:59 [INFO] [stderr] 4: 0x56286e320b3c - core::fmt::write::he0c1e5f7426d2718 [INFO] [stderr] at src/libcore/fmt/mod.rs:1076 [INFO] [stderr] 5: 0x56286e2f07f2 - std::io::Write::write_fmt::hf3afc6cfd57d0033 [INFO] [stderr] at src/libstd/io/mod.rs:1537 [INFO] [stderr] 6: 0x56286e2f7c90 - std::sys_common::backtrace::_print::hfc0110703f3696fd [INFO] [stderr] at src/libstd/sys_common/backtrace.rs:62 [INFO] [stderr] 7: 0x56286e2f7c90 - std::sys_common::backtrace::print::h3f77c6990ddfaa22 [INFO] [stderr] at src/libstd/sys_common/backtrace.rs:49 [INFO] [stderr] 8: 0x56286e2f7c90 - std::panicking::default_hook::{{closure}}::heae49580a8d62d75 [INFO] [stderr] at src/libstd/panicking.rs:198 [INFO] [stderr] 9: 0x56286e2f79dc - std::panicking::default_hook::hecc34e3f729e213c [INFO] [stderr] at src/libstd/panicking.rs:217 [INFO] [stderr] 10: 0x56286e2f82d3 - std::panicking::rust_panic_with_hook::he82f5d0644692441 [INFO] [stderr] at src/libstd/panicking.rs:526 [INFO] [stderr] 11: 0x56286e171e79 - std::panicking::begin_panic::h3c0b2a53a0ac9dd9 [INFO] [stderr] at /rustc/04488afe34512aa4c33566eb16d8c912a3ae04f9/src/libstd/panicking.rs:456 [INFO] [stderr] 12: 0x56286dd0e515 - build_script_build::main::h2b50bb272ef02486 [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hts-sys-1.10.2/build.rs:86 [INFO] [stderr] 13: 0x56286dd0fe8b - std::rt::lang_start::{{closure}}::h1392ed2100dfbb33 [INFO] [stderr] at /rustc/04488afe34512aa4c33566eb16d8c912a3ae04f9/src/libstd/rt.rs:67 [INFO] [stderr] 14: 0x56286e2f8773 - std::rt::lang_start_internal::{{closure}}::h5d3ea623498f5f43 [INFO] [stderr] at src/libstd/rt.rs:52 [INFO] [stderr] 15: 0x56286e2f8773 - std::panicking::try::do_call::hac65e71be769a440 [INFO] [stderr] at src/libstd/panicking.rs:348 [INFO] [stderr] 16: 0x56286e2f8773 - std::panicking::try::hd4706e264bcf6712 [INFO] [stderr] at src/libstd/panicking.rs:325 [INFO] [stderr] 17: 0x56286e2f8773 - std::panic::catch_unwind::h948a0fb4a8b3ee82 [INFO] [stderr] at src/libstd/panic.rs:394 [INFO] [stderr] 18: 0x56286e2f8773 - std::rt::lang_start_internal::h72cc068ed2d0ac53 [INFO] [stderr] at src/libstd/rt.rs:51 [INFO] [stderr] 19: 0x56286dd0fe67 - std::rt::lang_start::h9f4d0a5f373e5ac4 [INFO] [stderr] at /rustc/04488afe34512aa4c33566eb16d8c912a3ae04f9/src/libstd/rt.rs:67 [INFO] [stderr] 20: 0x56286dd0f7da - main [INFO] [stderr] 21: 0x7ffa231080b3 - __libc_start_main [INFO] [stderr] 22: 0x56286dd0d1be - _start [INFO] [stderr] 23: 0x0 - [INFO] running `Command { std: "docker" "inspect" "664b0d153fb72aef725dbb562dad67c9bb01abf411e82ba5ba0311fb652d1938", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "664b0d153fb72aef725dbb562dad67c9bb01abf411e82ba5ba0311fb652d1938", kill_on_drop: false }` [INFO] [stdout] 664b0d153fb72aef725dbb562dad67c9bb01abf411e82ba5ba0311fb652d1938