[INFO] fetching crate rust-htslib 0.32.0... [INFO] testing rust-htslib-0.32.0 against beta-2020-07-24 for beta-1.46-1 [INFO] extracting crate rust-htslib 0.32.0 into /workspace/builds/worker-5/source [INFO] validating manifest of crates.io crate rust-htslib 0.32.0 on toolchain beta-2020-07-24 [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+beta-2020-07-24" "read-manifest" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] removed /workspace/builds/worker-5/source/.cargo/config [INFO] started tweaking crates.io crate rust-htslib 0.32.0 [INFO] finished tweaking crates.io crate rust-htslib 0.32.0 [INFO] tweaked toml for crates.io crate rust-htslib 0.32.0 written to /workspace/builds/worker-5/source/Cargo.toml [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+beta-2020-07-24" "generate-lockfile" "--manifest-path" "Cargo.toml" "-Zno-index-update", kill_on_drop: false }` [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+beta-2020-07-24" "fetch" "--locked" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=0" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env@sha256:a636fd89d022f18117e1dc8fb37a0a009933cdbbe082814857f0e2024962d47c" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2020-07-24" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] [stdout] 9542f86d83098c6e46b1d9575f6681ec7b5ef189ab212267ed553e13f6d03022 [INFO] running `Command { std: "docker" "start" "-a" "9542f86d83098c6e46b1d9575f6681ec7b5ef189ab212267ed553e13f6d03022", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "9542f86d83098c6e46b1d9575f6681ec7b5ef189ab212267ed553e13f6d03022", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "9542f86d83098c6e46b1d9575f6681ec7b5ef189ab212267ed553e13f6d03022", kill_on_drop: false }` [INFO] [stdout] 9542f86d83098c6e46b1d9575f6681ec7b5ef189ab212267ed553e13f6d03022 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=0" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env@sha256:a636fd89d022f18117e1dc8fb37a0a009933cdbbe082814857f0e2024962d47c" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2020-07-24" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] cfb63456f555571832ba9cdf8ac7ba4ecbfc02904c89815e81f6d056c0a968de [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "cfb63456f555571832ba9cdf8ac7ba4ecbfc02904c89815e81f6d056c0a968de", kill_on_drop: false }` [INFO] [stderr] Compiling semver v0.1.20 [INFO] [stderr] Compiling linear-map v1.2.0 [INFO] [stderr] Compiling ieee754 v0.2.6 [INFO] [stderr] Compiling fs-utils v1.1.4 [INFO] [stderr] Compiling jobserver v0.1.21 [INFO] [stderr] Compiling derive-new v0.5.8 [INFO] [stderr] Compiling thiserror-impl v1.0.20 [INFO] [stderr] Compiling rustc_version v0.1.7 [INFO] [stderr] Compiling cc v1.0.58 [INFO] [stderr] Compiling newtype_derive v0.1.6 [INFO] [stderr] Compiling openssl-src v111.10.2+1.1.1g [INFO] [stderr] Compiling libz-sys v1.0.25 [INFO] [stderr] Compiling openssl-sys v0.9.58 [INFO] [stderr] Compiling lzma-sys v0.1.16 [INFO] [stderr] Compiling bzip2-sys v0.1.9+1.0.8 [INFO] [stderr] Compiling curl-sys v0.4.34+curl-7.71.1 [INFO] [stderr] Compiling hts-sys v1.10.3 [INFO] [stderr] Compiling thiserror v1.0.20 [INFO] [stderr] Compiling bio-types v0.7.0 [INFO] [stderr] Compiling rust-htslib v0.32.0 (/opt/rustwide/workdir) [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 1m 19s [INFO] running `Command { std: "docker" "inspect" "cfb63456f555571832ba9cdf8ac7ba4ecbfc02904c89815e81f6d056c0a968de", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "cfb63456f555571832ba9cdf8ac7ba4ecbfc02904c89815e81f6d056c0a968de", kill_on_drop: false }` [INFO] [stdout] cfb63456f555571832ba9cdf8ac7ba4ecbfc02904c89815e81f6d056c0a968de [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=0" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env@sha256:a636fd89d022f18117e1dc8fb37a0a009933cdbbe082814857f0e2024962d47c" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2020-07-24" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 52e451350f2c6b20847700631eee33682719eddd4192ab15a6559d3322ae95a9 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "52e451350f2c6b20847700631eee33682719eddd4192ab15a6559d3322ae95a9", kill_on_drop: false }` [INFO] [stderr] Compiling bincode v1.3.1 [INFO] [stderr] Compiling rust-htslib v0.32.0 (/opt/rustwide/workdir) [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 15.04s [INFO] running `Command { std: "docker" "inspect" "52e451350f2c6b20847700631eee33682719eddd4192ab15a6559d3322ae95a9", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "52e451350f2c6b20847700631eee33682719eddd4192ab15a6559d3322ae95a9", kill_on_drop: false }` [INFO] [stdout] 52e451350f2c6b20847700631eee33682719eddd4192ab15a6559d3322ae95a9 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=0" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env@sha256:a636fd89d022f18117e1dc8fb37a0a009933cdbbe082814857f0e2024962d47c" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2020-07-24" "test" "--frozen", kill_on_drop: false }` [INFO] [stdout] 87b9aaa727e08006087147d67bbd2878f93bad9f193ec055d55d54fd8f2ae21e [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "87b9aaa727e08006087147d67bbd2878f93bad9f193ec055d55d54fd8f2ae21e", kill_on_drop: false }` [INFO] [stdout] [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 0.10s [INFO] [stdout] running 75 tests [INFO] [stderr] Running /opt/rustwide/target/debug/deps/rust_htslib-29a120b694b2c4da [INFO] [stdout] test bam::buffer::tests::test_buffer ... ok [INFO] [stdout] test bam::ext::tests::spliced_reads ... ok [INFO] [stdout] test bam::ext::tests::test_reference_start_end ... ok [INFO] [stdout] test bam::ext::tests::test_introns ... ok [INFO] [stdout] test bam::ext::tests::test_aligned_pairs ... ok [INFO] [stdout] test bam::pileup::tests::test_max_pileup ... ok [INFO] [stdout] test bam::record::tests::test_flags ... ok [INFO] [stdout] test bam::tests::test_bam_fails_on_vcf ... ok [INFO] [stdout] test bam::tests::test_bam_fails_on_toml ... ok [INFO] [stdout] test bam::record::tests::test_clone ... ok [INFO] [stdout] test bam::record::tests::test_cigar_string ... ok [INFO] [stdout] test bam::tests::parse_from_sam ... ok [INFO] [stdout] test bam::record::tests::test_cigar_parse ... ok [INFO] [stdout] test bam::ext::tests::test_infer_seq_len ... ok [INFO] [stdout] test bam::record::alignment_cigar_tests::test_cigar ... ok [INFO] [stdout] test bam::ext::tests::test_reference_positions ... ok [INFO] [stdout] test bam::tests::test_cigar_modes ... ok [INFO] [stdout] test bam::tests::test_compression_level_conversion ... ok [INFO] [stdout] test bam::tests::test_pileup ... ok [INFO] [stdout] test bam::tests::test_copy_template ... ok [INFO] [stdout] test bam::ext::tests::test_reference_positions_full ... ok [INFO] [stdout] test bam::tests::test_indexde_bam_fails_on_vcf ... ok [INFO] [stdout] test bam::record::tests::test_cigar_read_pos ... ok [INFO] [stderr] [E::hts_open_format] Failed to open file "./test/bam2sam_out.sam" : Read-only file system [INFO] [stdout] test bam::tests::test_seek ... ok [INFO] [stdout] test bam::tests::test_read_indexed_different_index_name ... ok [INFO] [stdout] test bam::tests::test_read_sam_header ... ok [INFO] [stdout] test bam::tests::test_set_qname2 ... ok [INFO] [stdout] test bam::tests::test_read ... ok [INFO] [stdout] test bam::tests::test_set_qname ... ok [INFO] [stdout] test bam::tests::test_read_cram ... ok [INFO] [stdout] test bam::tests::test_read_indexed ... ok [INFO] [stdout] test bcf::buffer::tests::test_buffer ... ok [INFO] [stdout] test bam::tests::test_write ... ok [INFO] [stdout] test bam::tests::test_remove_aux ... ok [INFO] [stdout] test bam::tests::test_set_repeated ... ok [INFO] [stdout] test bam::tests::test_write_compression ... ok [INFO] [stdout] test bam::tests::test_write_cram ... ok [INFO] [stdout] test bam::tests::test_set_record ... ok [INFO] [stdout] test bcf::tests::test_header_ids ... ok [INFO] [stdout] test bcf::tests::test_genotypes ... ok [INFO] [stdout] test bcf::tests::test_header_contigs ... ok [INFO] [stdout] test bcf::tests::test_fails_on_bam ... ok [INFO] [stdout] test bcf::tests::test_fails_on_non_existiant ... ok [INFO] [stdout] test bcf::tests::test_header_records ... ok [INFO] [stdout] test bcf::tests::test_header_samples ... ok [INFO] [stdout] test bcf::tests::test_read ... ok [INFO] [stdout] test bcf::tests::test_multi_string_info_tag ... ok [INFO] [stdout] test bcf::tests::test_fetch ... ok [INFO] [stdout] test bcf::tests::test_svlen ... ok [INFO] [stderr] [W::vcf_parse] Contig '19' is not defined in the header. (Quick workaround: index the file with tabix.) [INFO] [stdout] test bcf::tests::test_missing ... ok [INFO] [stdout] test bam::ext::tests::test_get_cigar_stats ... ok [INFO] [stdout] test bcf::tests::test_remove_headers ... ok [INFO] [stdout] test bcf::tests::test_reader_set_threads ... ok [INFO] [stdout] test bcf::tests::test_synced_reader ... ok [INFO] [stdout] test bcf::tests::test_remove_alleles ... ok [INFO] [stdout] test bcf::tests::test_strings ... ok [INFO] [stdout] test bcf::tests::test_write_various ... ok [INFO] [stdout] test bcf::tests::test_synced_reader_fetch ... ok [INFO] [stdout] test bcf::tests::test_multi_string_info_tag_number_a ... ok [INFO] [stdout] test tbx::tests::bed_fetch_from_chr1_iterator_api ... ok [INFO] [stdout] test tbx::tests::bed_basic ... ok [INFO] [stdout] test bam::tests::test_idx_pileup ... ok [INFO] [stdout] test tbx::tests::bed_fetch_from_chr1_read_api ... ok [INFO] [stdout] test bcf::tests::test_write ... ok [INFO] [stdout] test tbx::tests::test_fails_on_bam ... ok [INFO] [stdout] test tbx::tests::test_fails_on_non_existiant ... ok [INFO] [stdout] test tbx::tests::test_fails_on_vcf ... ok [INFO] [stdout] test bcf::tests::test_header_info_types ... ok [INFO] [stdout] test bcf::tests::test_writer_set_threads ... ok [INFO] [stderr] [E::hts_open_format] Failed to open file "http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/phase3/data/HG00096/exome_alignment/HG00096.chrom11.ILLUMINA.bwa.GBR.exome.20120522.bam" : Destination address required [INFO] [stdout] test bam::ext::tests::test_aligned_pairs_full ... ok [INFO] [stdout] test bam::tests::test_sam_writer_example ... FAILED [INFO] [stdout] test bam::tests::test_http_connect ... FAILED [INFO] [stdout] test bam::index::tests::test_index_build ... FAILED [INFO] [stdout] test bam::pileup::tests::test_max_pileup_to_high ... ok [INFO] [stdout] test bam::tests::test_write_threaded ... ok [INFO] [stdout] [INFO] [stdout] failures: [INFO] [stdout] [INFO] [stdout] ---- bam::tests::test_sam_writer_example stdout ---- [INFO] [stdout] thread 'bam::tests::test_sam_writer_example' panicked at 'called `Result::unwrap()` on an `Err` value: Open { target: "./test/bam2sam_out.sam" }', src/bam/mod.rs:1730:83 [INFO] [stdout] stack backtrace: [INFO] [stdout] 0: 0x55f9b8c3ef75 - backtrace::backtrace::libunwind::trace::h5e2646fa3eddf2ea [INFO] [stdout] at /cargo/registry/src/github.com-1ecc6299db9ec823/backtrace-0.3.46/src/backtrace/libunwind.rs:86 [INFO] [stdout] 1: 0x55f9b8c3ef75 - backtrace::backtrace::trace_unsynchronized::hb95dd7f77ce47877 [INFO] [stdout] at /cargo/registry/src/github.com-1ecc6299db9ec823/backtrace-0.3.46/src/backtrace/mod.rs:66 [INFO] [stdout] 2: 0x55f9b8c3ef75 - std::sys_common::backtrace::_print_fmt::h5e71b67af43fd70d [INFO] [stdout] at src/libstd/sys_common/backtrace.rs:78 [INFO] [stdout] 3: 0x55f9b8c3ef75 - ::fmt::hdb4a83d2b61107e5 [INFO] [stdout] at src/libstd/sys_common/backtrace.rs:59 [INFO] [stdout] 4: 0x55f9b8c6823c - core::fmt::write::ha20e7262fa3e8a7a [INFO] [stdout] at src/libcore/fmt/mod.rs:1076 [INFO] [stdout] 5: 0x55f9b87125b5 - std::io::Write::write_fmt::hd8ff364c7845d2d0 [INFO] [stdout] at /rustc/6f959902b3103c49ca981fbc01871589c3498489/src/libstd/io/mod.rs:1537 [INFO] [stdout] 6: 0x55f9b8c38671 - std::io::impls::>::write_fmt::h1c057ef6e8762996 [INFO] [stdout] at src/libstd/io/impls.rs:176 [INFO] [stdout] 7: 0x55f9b8c41bc0 - std::sys_common::backtrace::_print::h9c07314cc66ba539 [INFO] [stdout] at src/libstd/sys_common/backtrace.rs:62 [INFO] [stdout] 8: 0x55f9b8c41bc0 - std::sys_common::backtrace::print::hd1fd65f49a2d8544 [INFO] [stdout] at src/libstd/sys_common/backtrace.rs:49 [INFO] [stdout] 9: 0x55f9b8c41bc0 - std::panicking::default_hook::{{closure}}::h222da46485ab36fc [INFO] [stdout] at src/libstd/panicking.rs:198 [INFO] [stdout] 10: 0x55f9b8c418ba - std::panicking::default_hook::hc5868949d129ed00 [INFO] [stdout] at src/libstd/panicking.rs:214 [INFO] [stdout] 11: 0x55f9b8c42203 - std::panicking::rust_panic_with_hook::h26a6ab8b0993c0c8 [INFO] [stdout] at src/libstd/panicking.rs:526 [INFO] [stdout] 12: 0x55f9b8c41dfb - rust_begin_unwind [INFO] [stdout] at src/libstd/panicking.rs:437 [INFO] [stdout] 13: 0x55f9b8c66bd1 - core::panicking::panic_fmt::h17139c2000299725 [INFO] [stdout] at src/libcore/panicking.rs:85 [INFO] [stdout] 14: 0x55f9b8c669f3 - core::option::expect_none_failed::h972f96abb4ec8952 [INFO] [stdout] at src/libcore/option.rs:1269 [INFO] [stdout] 15: 0x55f9b866aa83 - core::result::Result::unwrap::hc030001f9a8d89f8 [INFO] [stdout] at /rustc/6f959902b3103c49ca981fbc01871589c3498489/src/libcore/result.rs:1005 [INFO] [stdout] 16: 0x55f9b8647351 - rust_htslib::bam::tests::test_sam_writer_example::from_bam_with_filter::h887cdb56c245c19e [INFO] [stdout] at src/bam/mod.rs:1730 [INFO] [stdout] 17: 0x55f9b8646d9d - rust_htslib::bam::tests::test_sam_writer_example::hcd0046d9f9c8f1ea [INFO] [stdout] at src/bam/mod.rs:1753 [INFO] [stdout] 18: 0x55f9b8646d1a - rust_htslib::bam::tests::test_sam_writer_example::{{closure}}::h367eaff839acebbc [INFO] [stdout] at src/bam/mod.rs:1723 [INFO] [stdout] 19: 0x55f9b866ff3e - core::ops::function::FnOnce::call_once::h8e70bdec4299e27d [INFO] [stdout] at /rustc/6f959902b3103c49ca981fbc01871589c3498489/src/libcore/ops/function.rs:233 [INFO] [stdout] 20: 0x55f9b8739b2c - as core::ops::function::FnOnce>::call_once::h42148c33ed88c979 [INFO] [stdout] at /rustc/6f959902b3103c49ca981fbc01871589c3498489/src/liballoc/boxed.rs:1081 [INFO] [stdout] 21: 0x55f9b8739b2c - as core::ops::function::FnOnce<()>>::call_once::h759dc0b09d774665 [INFO] [stdout] at /rustc/6f959902b3103c49ca981fbc01871589c3498489/src/libstd/panic.rs:318 [INFO] [stdout] 22: 0x55f9b8739b2c - std::panicking::try::do_call::h676ad1fc9e9badea [INFO] [stdout] at /rustc/6f959902b3103c49ca981fbc01871589c3498489/src/libstd/panicking.rs:348 [INFO] [stdout] 23: 0x55f9b8739b2c - std::panicking::try::hee36a8727a3050b0 [INFO] [stdout] at /rustc/6f959902b3103c49ca981fbc01871589c3498489/src/libstd/panicking.rs:325 [INFO] [stdout] 24: 0x55f9b8739b2c - std::panic::catch_unwind::hd5d426ebd89b2542 [INFO] [stdout] at /rustc/6f959902b3103c49ca981fbc01871589c3498489/src/libstd/panic.rs:394 [INFO] [stdout] 25: 0x55f9b8739b2c - test::run_test_in_process::h8dacdba4dc4cbaa5 [INFO] [stdout] at src/libtest/lib.rs:541 [INFO] [stdout] 26: 0x55f9b8739b2c - test::run_test::run_test_inner::{{closure}}::hf93754afad6be40f [INFO] [stdout] at src/libtest/lib.rs:450 [INFO] [stdout] 27: 0x55f9b8711aa6 - std::sys_common::backtrace::__rust_begin_short_backtrace::h2c69fab544a90730 [INFO] [stdout] at /rustc/6f959902b3103c49ca981fbc01871589c3498489/src/libstd/sys_common/backtrace.rs:130 [INFO] [stdout] 28: 0x55f9b8716b35 - std::thread::Builder::spawn_unchecked::{{closure}}::{{closure}}::hcf302fafa60d80f2 [INFO] [stdout] at /rustc/6f959902b3103c49ca981fbc01871589c3498489/src/libstd/thread/mod.rs:475 [INFO] [stdout] 29: 0x55f9b8716b35 - as core::ops::function::FnOnce<()>>::call_once::h39ede710608e817e [INFO] [stdout] at /rustc/6f959902b3103c49ca981fbc01871589c3498489/src/libstd/panic.rs:318 [INFO] [stdout] 30: 0x55f9b8716b35 - std::panicking::try::do_call::hec0b4d2faa46fbf7 [INFO] [stdout] at /rustc/6f959902b3103c49ca981fbc01871589c3498489/src/libstd/panicking.rs:348 [INFO] [stdout] 31: 0x55f9b8716b35 - std::panicking::try::h0144ba3f2539803d [INFO] [stdout] at /rustc/6f959902b3103c49ca981fbc01871589c3498489/src/libstd/panicking.rs:325 [INFO] [stdout] 32: 0x55f9b8716b35 - std::panic::catch_unwind::ha03e59eb589f857b [INFO] [stdout] at /rustc/6f959902b3103c49ca981fbc01871589c3498489/src/libstd/panic.rs:394 [INFO] [stdout] 33: 0x55f9b8716b35 - std::thread::Builder::spawn_unchecked::{{closure}}::hdeba34620a4a7a44 [INFO] [stdout] at /rustc/6f959902b3103c49ca981fbc01871589c3498489/src/libstd/thread/mod.rs:474 [INFO] [stdout] 34: 0x55f9b8716b35 - core::ops::function::FnOnce::call_once{{vtable.shim}}::h552693dbb801eadd [INFO] [stdout] at /rustc/6f959902b3103c49ca981fbc01871589c3498489/src/libcore/ops/function.rs:233 [INFO] [stdout] 35: 0x55f9b8c48d2a - as core::ops::function::FnOnce>::call_once::h61c24496ae624ac5 [INFO] [stdout] at /rustc/6f959902b3103c49ca981fbc01871589c3498489/src/liballoc/boxed.rs:1081 [INFO] [stdout] 36: 0x55f9b8c48d2a - as core::ops::function::FnOnce>::call_once::h89548957afa14049 [INFO] [stdout] at /rustc/6f959902b3103c49ca981fbc01871589c3498489/src/liballoc/boxed.rs:1081 [INFO] [stdout] 37: 0x55f9b8c48d2a - std::sys::unix::thread::Thread::new::thread_start::h73903fbbff5b990e [INFO] [stdout] at src/libstd/sys/unix/thread.rs:87 [INFO] [stdout] 38: 0x7f914a580609 - start_thread [INFO] [stdout] 39: 0x7f914a48c103 - __clone [INFO] [stdout] 40: 0x0 - [INFO] [stdout] [INFO] [stdout] ---- bam::tests::test_http_connect stdout ---- [INFO] [stdout] Err( [INFO] [stdout] Open { [INFO] [stdout] target: "http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/phase3/data/HG00096/exome_alignment/HG00096.chrom11.ILLUMINA.bwa.GBR.exome.20120522.bam", [INFO] [stdout] }, [INFO] [stdout] ) [INFO] [stdout] thread 'bam::tests::test_http_connect' panicked at 'called `Result::unwrap()` on an `Err` value: Open { target: "http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/phase3/data/HG00096/exome_alignment/HG00096.chrom11.ILLUMINA.bwa.GBR.exome.20120522.bam" }', src/bam/mod.rs:1775:19 [INFO] [stdout] stack backtrace: [INFO] [stdout] 0: 0x55f9b8c3ef75 - backtrace::backtrace::libunwind::trace::h5e2646fa3eddf2ea [INFO] [stdout] at /cargo/registry/src/github.com-1ecc6299db9ec823/backtrace-0.3.46/src/backtrace/libunwind.rs:86 [INFO] [stdout] 1: 0x55f9b8c3ef75 - backtrace::backtrace::trace_unsynchronized::hb95dd7f77ce47877 [INFO] [stdout] at /cargo/registry/src/github.com-1ecc6299db9ec823/backtrace-0.3.46/src/backtrace/mod.rs:66 [INFO] [stdout] 2: 0x55f9b8c3ef75 - std::sys_common::backtrace::_print_fmt::h5e71b67af43fd70d [INFO] [stdout] at src/libstd/sys_common/backtrace.rs:78 [INFO] [stdout] 3: 0x55f9b8c3ef75 - ::fmt::hdb4a83d2b61107e5 [INFO] [stdout] at src/libstd/sys_common/backtrace.rs:59 [INFO] [stdout] 4: 0x55f9b8c6823c - core::fmt::write::ha20e7262fa3e8a7a [INFO] [stdout] at src/libcore/fmt/mod.rs:1076 [INFO] [stdout] 5: 0x55f9b87125b5 - std::io::Write::write_fmt::hd8ff364c7845d2d0 [INFO] [stdout] at /rustc/6f959902b3103c49ca981fbc01871589c3498489/src/libstd/io/mod.rs:1537 [INFO] [stdout] 6: 0x55f9b8c38671 - std::io::impls::>::write_fmt::h1c057ef6e8762996 [INFO] [stdout] at src/libstd/io/impls.rs:176 [INFO] [stdout] 7: 0x55f9b8c41bc0 - std::sys_common::backtrace::_print::h9c07314cc66ba539 [INFO] [stdout] at src/libstd/sys_common/backtrace.rs:62 [INFO] [stdout] 8: 0x55f9b8c41bc0 - std::sys_common::backtrace::print::hd1fd65f49a2d8544 [INFO] [stdout] at src/libstd/sys_common/backtrace.rs:49 [INFO] [stdout] 9: 0x55f9b8c41bc0 - std::panicking::default_hook::{{closure}}::h222da46485ab36fc [INFO] [stdout] at src/libstd/panicking.rs:198 [INFO] [stdout] 10: 0x55f9b8c418ba - std::panicking::default_hook::hc5868949d129ed00 [INFO] [stdout] at src/libstd/panicking.rs:214 [INFO] [stdout] 11: 0x55f9b8c42203 - std::panicking::rust_panic_with_hook::h26a6ab8b0993c0c8 [INFO] [stdout] at src/libstd/panicking.rs:526 [INFO] [stdout] 12: 0x55f9b8c41dfb - rust_begin_unwind [INFO] [stdout] at src/libstd/panicking.rs:437 [INFO] [stdout] 13: 0x55f9b8c66bd1 - core::panicking::panic_fmt::h17139c2000299725 [INFO] [stdout] at src/libcore/panicking.rs:85 [INFO] [stdout] 14: 0x55f9b8c669f3 - core::option::expect_none_failed::h972f96abb4ec8952 [INFO] [stdout] at src/libcore/option.rs:1269 [INFO] [stdout] 15: 0x55f9b866a793 - core::result::Result::unwrap::hb09493a038a16e08 [INFO] [stdout] at /rustc/6f959902b3103c49ca981fbc01871589c3498489/src/libcore/result.rs:1005 [INFO] [stdout] 16: 0x55f9b86479af - rust_htslib::bam::tests::test_http_connect::h50b3e4368d007618 [INFO] [stdout] at src/bam/mod.rs:1775 [INFO] [stdout] 17: 0x55f9b864781a - rust_htslib::bam::tests::test_http_connect::{{closure}}::h6826e92fcd73f241 [INFO] [stdout] at src/bam/mod.rs:1770 [INFO] [stdout] 18: 0x55f9b866fbee - core::ops::function::FnOnce::call_once::h641f33b03ce713d5 [INFO] [stdout] at /rustc/6f959902b3103c49ca981fbc01871589c3498489/src/libcore/ops/function.rs:233 [INFO] [stdout] 19: 0x55f9b8739b2c - as core::ops::function::FnOnce>::call_once::h42148c33ed88c979 [INFO] [stdout] at /rustc/6f959902b3103c49ca981fbc01871589c3498489/src/liballoc/boxed.rs:1081 [INFO] [stdout] 20: 0x55f9b8739b2c - as core::ops::function::FnOnce<()>>::call_once::h759dc0b09d774665 [INFO] [stdout] at /rustc/6f959902b3103c49ca981fbc01871589c3498489/src/libstd/panic.rs:318 [INFO] [stdout] 21: 0x55f9b8739b2c - std::panicking::try::do_call::h676ad1fc9e9badea [INFO] [stdout] at /rustc/6f959902b3103c49ca981fbc01871589c3498489/src/libstd/panicking.rs:348 [INFO] [stdout] 22: 0x55f9b8739b2c - std::panicking::try::hee36a8727a3050b0 [INFO] [stdout] at /rustc/6f959902b3103c49ca981fbc01871589c3498489/src/libstd/panicking.rs:325 [INFO] [stdout] 23: 0x55f9b8739b2c - std::panic::catch_unwind::hd5d426ebd89b2542 [INFO] [stdout] at /rustc/6f959902b3103c49ca981fbc01871589c3498489/src/libstd/panic.rs:394 [INFO] [stdout] 24: 0x55f9b8739b2c - test::run_test_in_process::h8dacdba4dc4cbaa5 [INFO] [stdout] at src/libtest/lib.rs:541 [INFO] [stdout] 25: 0x55f9b8739b2c - test::run_test::run_test_inner::{{closure}}::hf93754afad6be40f [INFO] [stdout] at src/libtest/lib.rs:450 [INFO] [stdout] 26: 0x55f9b8711aa6 - std::sys_common::backtrace::__rust_begin_short_backtrace::h2c69fab544a90730 [INFO] [stdout] at /rustc/6f959902b3103c49ca981fbc01871589c3498489/src/libstd/sys_common/backtrace.rs:130 [INFO] [stdout] 27: 0x55f9b8716b35 - std::thread::Builder::spawn_unchecked::{{closure}}::{{closure}}::hcf302fafa60d80f2 [INFO] [stdout] at /rustc/6f959902b3103c49ca981fbc01871589c3498489/src/libstd/thread/mod.rs:475 [INFO] [stdout] 28: 0x55f9b8716b35 - as core::ops::function::FnOnce<()>>::call_once::h39ede710608e817e [INFO] [stdout] at /rustc/6f959902b3103c49ca981fbc01871589c3498489/src/libstd/panic.rs:318 [INFO] [stdout] 29: 0x55f9b8716b35 - std::panicking::try::do_call::hec0b4d2faa46fbf7 [INFO] [stdout] at /rustc/6f959902b3103c49ca981fbc01871589c3498489/src/libstd/panicking.rs:348 [INFO] [stdout] 30: 0x55f9b8716b35 - std::panicking::try::h0144ba3f2539803d [INFO] [stdout] at /rustc/6f959902b3103c49ca981fbc01871589c3498489/src/libstd/panicking.rs:325 [INFO] [stdout] 31: 0x55f9b8716b35 - std::panic::catch_unwind::ha03e59eb589f857b [INFO] [stdout] at /rustc/6f959902b3103c49ca981fbc01871589c3498489/src/libstd/panic.rs:394 [INFO] [stdout] 32: 0x55f9b8716b35 - std::thread::Builder::spawn_unchecked::{{closure}}::hdeba34620a4a7a44 [INFO] [stdout] at /rustc/6f959902b3103c49ca981fbc01871589c3498489/src/libstd/thread/mod.rs:474 [INFO] [stdout] 33: 0x55f9b8716b35 - core::ops::function::FnOnce::call_once{{vtable.shim}}::h552693dbb801eadd [INFO] [stdout] at /rustc/6f959902b3103c49ca981fbc01871589c3498489/src/libcore/ops/function.rs:233 [INFO] [stdout] 34: 0x55f9b8c48d2a - as core::ops::function::FnOnce>::call_once::h61c24496ae624ac5 [INFO] [stdout] at /rustc/6f959902b3103c49ca981fbc01871589c3498489/src/liballoc/boxed.rs:1081 [INFO] [stdout] 35: 0x55f9b8c48d2a - as core::ops::function::FnOnce>::call_once::h89548957afa14049 [INFO] [stdout] at /rustc/6f959902b3103c49ca981fbc01871589c3498489/src/liballoc/boxed.rs:1081 [INFO] [stdout] 36: 0x55f9b8c48d2a - std::sys::unix::thread::Thread::new::thread_start::h73903fbbff5b990e [INFO] [stdout] at src/libstd/sys/unix/thread.rs:87 [INFO] [stdout] 37: 0x7f914a580609 - start_thread [INFO] [stdout] 38: 0x7f914a48c103 - __clone [INFO] [stdout] 39: 0x0 - [INFO] [stdout] [INFO] [stdout] ---- bam::index::tests::test_index_build stdout ---- [INFO] [stdout] thread 'bam::index::tests::test_index_build' panicked at 'called `Result::unwrap()` on an `Err` value: WriteIndex', src/bam/index.rs:72:51 [INFO] [stdout] stack backtrace: [INFO] [stdout] 0: 0x55f9b8c3ef75 - backtrace::backtrace::libunwind::trace::h5e2646fa3eddf2ea [INFO] [stdout] at /cargo/registry/src/github.com-1ecc6299db9ec823/backtrace-0.3.46/src/backtrace/libunwind.rs:86 [INFO] [stdout] 1: 0x55f9b8c3ef75 - backtrace::backtrace::trace_unsynchronized::hb95dd7f77ce47877 [INFO] [stdout] at /cargo/registry/src/github.com-1ecc6299db9ec823/backtrace-0.3.46/src/backtrace/mod.rs:66 [INFO] [stdout] 2: 0x55f9b8c3ef75 - std::sys_common::backtrace::_print_fmt::h5e71b67af43fd70d [INFO] [stdout] at src/libstd/sys_common/backtrace.rs:78 [INFO] [stdout] 3: 0x55f9b8c3ef75 - ::fmt::hdb4a83d2b61107e5 [INFO] [stdout] at src/libstd/sys_common/backtrace.rs:59 [INFO] [stdout] 4: 0x55f9b8c6823c - core::fmt::write::ha20e7262fa3e8a7a [INFO] [stdout] at src/libcore/fmt/mod.rs:1076 [INFO] [stdout] 5: 0x55f9b87125b5 - std::io::Write::write_fmt::hd8ff364c7845d2d0 [INFO] [stdout] at /rustc/6f959902b3103c49ca981fbc01871589c3498489/src/libstd/io/mod.rs:1537 [INFO] [stdout] 6: 0x55f9b8c38671 - std::io::impls::>::write_fmt::h1c057ef6e8762996 [INFO] [stdout] at src/libstd/io/impls.rs:176 [INFO] [stdout] 7: 0x55f9b8c41bc0 - std::sys_common::backtrace::_print::h9c07314cc66ba539 [INFO] [stdout] at src/libstd/sys_common/backtrace.rs:62 [INFO] [stdout] 8: 0x55f9b8c41bc0 - std::sys_common::backtrace::print::hd1fd65f49a2d8544 [INFO] [stdout] at src/libstd/sys_common/backtrace.rs:49 [INFO] [stdout] 9: 0x55f9b8c41bc0 - std::panicking::default_hook::{{closure}}::h222da46485ab36fc [INFO] [stdout] at src/libstd/panicking.rs:198 [INFO] [stdout] 10: 0x55f9b8c418ba - std::panicking::default_hook::hc5868949d129ed00 [INFO] [stdout] at src/libstd/panicking.rs:214 [INFO] [stdout] 11: 0x55f9b8c42203 - std::panicking::rust_panic_with_hook::h26a6ab8b0993c0c8 [INFO] [stdout] at src/libstd/panicking.rs:526 [INFO] [stdout] 12: 0x55f9b8c41dfb - rust_begin_unwind [INFO] [stdout] at src/libstd/panicking.rs:437 [INFO] [stdout] 13: 0x55f9b8c66bd1 - core::panicking::panic_fmt::h17139c2000299725 [INFO] [stdout] at src/libcore/panicking.rs:85 [INFO] [stdout] 14: 0x55f9b8c669f3 - core::option::expect_none_failed::h972f96abb4ec8952 [INFO] [stdout] at src/libcore/option.rs:1269 [INFO] [stdout] 15: 0x55f9b866a0ea - core::result::Result::unwrap::h6b3cb1038a962dff [INFO] [stdout] at /rustc/6f959902b3103c49ca981fbc01871589c3498489/src/libcore/result.rs:1005 [INFO] [stdout] 16: 0x55f9b868f729 - rust_htslib::bam::index::tests::test_index_build::hcb33264bd3e9c6f9 [INFO] [stdout] at src/bam/index.rs:72 [INFO] [stdout] 17: 0x55f9b868f65a - rust_htslib::bam::index::tests::test_index_build::{{closure}}::hd3b45bf3828be3c4 [INFO] [stdout] at src/bam/index.rs:67 [INFO] [stdout] 18: 0x55f9b866f59e - core::ops::function::FnOnce::call_once::h024d7a438df9bc9e [INFO] [stdout] at /rustc/6f959902b3103c49ca981fbc01871589c3498489/src/libcore/ops/function.rs:233 [INFO] [stdout] 19: 0x55f9b8739b2c - as core::ops::function::FnOnce>::call_once::h42148c33ed88c979 [INFO] [stdout] at /rustc/6f959902b3103c49ca981fbc01871589c3498489/src/liballoc/boxed.rs:1081 [INFO] [stdout] 20: 0x55f9b8739b2c - as core::ops::function::FnOnce<()>>::call_once::h759dc0b09d774665 [INFO] [stdout] at /rustc/6f959902b3103c49ca981fbc01871589c3498489/src/libstd/panic.rs:318 [INFO] [stdout] 21: 0x55f9b8739b2c - std::panicking::try::do_call::h676ad1fc9e9badea [INFO] [stdout] at /rustc/6f959902b3103c49ca981fbc01871589c3498489/src/libstd/panicking.rs:348 [INFO] [stdout] 22: 0x55f9b8739b2c - std::panicking::try::hee36a8727a3050b0 [INFO] [stdout] at /rustc/6f959902b3103c49ca981fbc01871589c3498489/src/libstd/panicking.rs:325 [INFO] [stdout] 23: 0x55f9b8739b2c - std::panic::catch_unwind::hd5d426ebd89b2542 [INFO] [stdout] at /rustc/6f959902b3103c49ca981fbc01871589c3498489/src/libstd/panic.rs:394 [INFO] [stdout] 24: 0x55f9b8739b2c - test::run_test_in_process::h8dacdba4dc4cbaa5 [INFO] [stdout] at src/libtest/lib.rs:541 [INFO] [stdout] 25: 0x55f9b8739b2c - test::run_test::run_test_inner::{{closure}}::hf93754afad6be40f [INFO] [stdout] at src/libtest/lib.rs:450 [INFO] [stdout] 26: 0x55f9b8711aa6 - std::sys_common::backtrace::__rust_begin_short_backtrace::h2c69fab544a90730 [INFO] [stdout] at /rustc/6f959902b3103c49ca981fbc01871589c3498489/src/libstd/sys_common/backtrace.rs:130 [INFO] [stdout] 27: 0x55f9b8716b35 - std::thread::Builder::spawn_unchecked::{{closure}}::{{closure}}::hcf302fafa60d80f2 [INFO] [stdout] at /rustc/6f959902b3103c49ca981fbc01871589c3498489/src/libstd/thread/mod.rs:475 [INFO] [stdout] 28: 0x55f9b8716b35 - as core::ops::function::FnOnce<()>>::call_once::h39ede710608e817e [INFO] [stdout] at /rustc/6f959902b3103c49ca981fbc01871589c3498489/src/libstd/panic.rs:318 [INFO] [stdout] 29: 0x55f9b8716b35 - std::panicking::try::do_call::hec0b4d2faa46fbf7 [INFO] [stdout] at /rustc/6f959902b3103c49ca981fbc01871589c3498489/src/libstd/panicking.rs:348 [INFO] [stdout] 30: 0x55f9b8716b35 - std::panicking::try::h0144ba3f2539803d [INFO] [stdout] at /rustc/6f959902b3103c49ca981fbc01871589c3498489/src/libstd/panicking.rs:325 [INFO] [stdout] 31: 0x55f9b8716b35 - std::panic::catch_unwind::ha03e59eb589f857b [INFO] [stdout] at /rustc/6f959902b3103c49ca981fbc01871589c3498489/src/libstd/panic.rs:394 [INFO] [stdout] 32: 0x55f9b8716b35 - std::thread::Builder::spawn_unchecked::{{closure}}::hdeba34620a4a7a44 [INFO] [stdout] at /rustc/6f959902b3103c49ca981fbc01871589c3498489/src/libstd/thread/mod.rs:474 [INFO] [stdout] 33: 0x55f9b8716b35 - core::ops::function::FnOnce::call_once{{vtable.shim}}::h552693dbb801eadd [INFO] [stdout] at /rustc/6f959902b3103c49ca981fbc01871589c3498489/src/libcore/ops/function.rs:233 [INFO] [stdout] 34: 0x55f9b8c48d2a - as core::ops::function::FnOnce>::call_once::h61c24496ae624ac5 [INFO] [stdout] at /rustc/6f959902b3103c49ca981fbc01871589c3498489/src/liballoc/boxed.rs:1081 [INFO] [stdout] 35: 0x55f9b8c48d2a - as core::ops::function::FnOnce>::call_once::h89548957afa14049 [INFO] [stdout] at /rustc/6f959902b3103c49ca981fbc01871589c3498489/src/liballoc/boxed.rs:1081 [INFO] [stdout] 36: 0x55f9b8c48d2a - std::sys::unix::thread::Thread::new::thread_start::h73903fbbff5b990e [INFO] [stdout] at src/libstd/sys/unix/thread.rs:87 [INFO] [stdout] 37: 0x7f914a580609 - start_thread [INFO] [stdout] 38: 0x7f914a48c103 - __clone [INFO] [stdout] 39: 0x0 - [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] failures: [INFO] [stdout] bam::index::tests::test_index_build [INFO] [stdout] bam::tests::test_http_connect [INFO] [stdout] bam::tests::test_sam_writer_example [INFO] [stdout] [INFO] [stdout] test result: FAILED. 72 passed; 3 failed; 0 ignored; 0 measured; 0 filtered out [INFO] [stdout] [INFO] [stderr] error: test failed, to rerun pass '--lib' [INFO] running `Command { std: "docker" "inspect" "87b9aaa727e08006087147d67bbd2878f93bad9f193ec055d55d54fd8f2ae21e", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "87b9aaa727e08006087147d67bbd2878f93bad9f193ec055d55d54fd8f2ae21e", kill_on_drop: false }` [INFO] [stdout] 87b9aaa727e08006087147d67bbd2878f93bad9f193ec055d55d54fd8f2ae21e