[INFO] crate rna-algos 0.1.15 is already in cache [INFO] testing rna-algos-0.1.15 against beta-2020-07-24 for beta-1.46-1 [INFO] extracting crate rna-algos 0.1.15 into /workspace/builds/worker-7/source [INFO] validating manifest of crates.io crate rna-algos 0.1.15 on toolchain beta-2020-07-24 [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+beta-2020-07-24" "read-manifest" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] started tweaking crates.io crate rna-algos 0.1.15 [INFO] finished tweaking crates.io crate rna-algos 0.1.15 [INFO] tweaked toml for crates.io crate rna-algos 0.1.15 written to /workspace/builds/worker-7/source/Cargo.toml [INFO] crate crates.io crate rna-algos 0.1.15 already has a lockfile, it will not be regenerated [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+beta-2020-07-24" "fetch" "--locked" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=0" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env@sha256:a636fd89d022f18117e1dc8fb37a0a009933cdbbe082814857f0e2024962d47c" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2020-07-24" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 50b7cefe8c4e426a47c7a005902f36cf3272307136b7a4c8f5e4e1060158e488 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "50b7cefe8c4e426a47c7a005902f36cf3272307136b7a4c8f5e4e1060158e488", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "50b7cefe8c4e426a47c7a005902f36cf3272307136b7a4c8f5e4e1060158e488", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "50b7cefe8c4e426a47c7a005902f36cf3272307136b7a4c8f5e4e1060158e488", kill_on_drop: false }` [INFO] [stdout] 50b7cefe8c4e426a47c7a005902f36cf3272307136b7a4c8f5e4e1060158e488 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=0" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env@sha256:a636fd89d022f18117e1dc8fb37a0a009933cdbbe082814857f0e2024962d47c" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2020-07-24" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] [stdout] 23157b7d45e2076f97f51fe8e8c0ace08517e52996b6e40196931a0618eea2d6 [INFO] running `Command { std: "docker" "start" "-a" "23157b7d45e2076f97f51fe8e8c0ace08517e52996b6e40196931a0618eea2d6", kill_on_drop: false }` [INFO] [stderr] Compiling syn v1.0.23 [INFO] [stderr] Compiling serde v1.0.110 [INFO] [stderr] Compiling libc v0.2.70 [INFO] [stderr] Compiling matrixmultiply v0.1.15 [INFO] [stderr] Compiling bv v0.7.4 [INFO] [stderr] Compiling rawpointer v0.1.0 [INFO] [stderr] Compiling ndarray v0.9.1 [INFO] [stderr] Compiling lazy_static v0.1.16 [INFO] [stderr] Compiling hashbrown v0.3.1 [INFO] [stderr] Compiling bit-vec v0.4.4 [INFO] [stderr] Compiling bytecount v0.3.2 [INFO] [stderr] Compiling custom_derive v0.1.7 [INFO] [stderr] Compiling approx v0.1.1 [INFO] [stderr] Compiling num-integer v0.1.42 [INFO] [stderr] Compiling itertools v0.6.5 [INFO] [stderr] Compiling newtype_derive v0.1.6 [INFO] [stderr] Compiling fxhash v0.2.1 [INFO] [stderr] Compiling aho-corasick v0.6.10 [INFO] [stderr] Compiling num-traits v0.1.43 [INFO] [stderr] Compiling num-complex v0.1.43 [INFO] [stderr] Compiling itertools-num v0.1.3 [INFO] [stderr] Compiling ordered-float v0.5.2 [INFO] [stderr] Compiling bit-set v0.4.0 [INFO] [stderr] Compiling regex v0.2.11 [INFO] [stderr] Compiling time v0.1.43 [INFO] [stderr] Compiling num_cpus v1.13.0 [INFO] [stderr] Compiling bio-seq-algos v0.1.17 [INFO] [stderr] Compiling rna-ss-params v0.1.17 [INFO] [stderr] Compiling serde_derive v1.0.110 [INFO] [stderr] Compiling bstr v0.2.13 [INFO] [stderr] Compiling multimap v0.4.0 [INFO] [stderr] Compiling vec_map v0.8.2 [INFO] [stderr] Compiling csv v1.1.3 [INFO] [stderr] Compiling bio v0.20.3 [INFO] [stderr] Compiling rna-algos v0.1.15 (/opt/rustwide/workdir) [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 49.91s [INFO] running `Command { std: "docker" "inspect" "23157b7d45e2076f97f51fe8e8c0ace08517e52996b6e40196931a0618eea2d6", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "23157b7d45e2076f97f51fe8e8c0ace08517e52996b6e40196931a0618eea2d6", kill_on_drop: false }` [INFO] [stdout] 23157b7d45e2076f97f51fe8e8c0ace08517e52996b6e40196931a0618eea2d6 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=0" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env@sha256:a636fd89d022f18117e1dc8fb37a0a009933cdbbe082814857f0e2024962d47c" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2020-07-24" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 14d4c176646237414016db8732e40089ba3a47c75ef25a5a8ede6336bc527051 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "14d4c176646237414016db8732e40089ba3a47c75ef25a5a8ede6336bc527051", kill_on_drop: false }` [INFO] [stderr] Compiling rna-algos v0.1.15 (/opt/rustwide/workdir) [INFO] [stdout] warning: unnecessary braces around block return value [INFO] [stdout] --> tests/tests.rs:14:36 [INFO] [stdout] | [INFO] [stdout] 14 | static ref TEST_SEQ_LEN: usize = {TEST_SEQ.len()}; [INFO] [stdout] | ^^^^^^^^^^^^^^^^ help: remove these braces [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_braces)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated item 'std::sync::ONCE_INIT': the `new` function is now preferred [INFO] [stdout] --> tests/tests.rs:10:1 [INFO] [stdout] | [INFO] [stdout] 10 | / lazy_static! { [INFO] [stdout] 11 | | static ref TEST_SEQ: Seq = { [INFO] [stdout] 12 | | convert(&String::from("AUGCAAGGGGGCUUUAACACAUGGGAUCCAUGCAAGGGGGCUUUAACACAUGGGAUCCAUGCAAGGGGGCUUUAACACAUGGGAUCC").into_bytes()) [INFO] [stdout] 13 | | }; [INFO] [stdout] 14 | | static ref TEST_SEQ_LEN: usize = {TEST_SEQ.len()}; [INFO] [stdout] 15 | | } [INFO] [stdout] | |_^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(deprecated)]` on by default [INFO] [stdout] = note: this warning originates in a macro (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated item 'std::sync::ONCE_INIT': the `new` function is now preferred [INFO] [stdout] --> tests/tests.rs:10:1 [INFO] [stdout] | [INFO] [stdout] 10 | / lazy_static! { [INFO] [stdout] 11 | | static ref TEST_SEQ: Seq = { [INFO] [stdout] 12 | | convert(&String::from("AUGCAAGGGGGCUUUAACACAUGGGAUCCAUGCAAGGGGGCUUUAACACAUGGGAUCCAUGCAAGGGGGCUUUAACACAUGGGAUCC").into_bytes()) [INFO] [stdout] 13 | | }; [INFO] [stdout] 14 | | static ref TEST_SEQ_LEN: usize = {TEST_SEQ.len()}; [INFO] [stdout] 15 | | } [INFO] [stdout] | |_^ [INFO] [stdout] | [INFO] [stdout] = note: this warning originates in a macro (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated item 'std::sync::ONCE_INIT': the `new` function is now preferred [INFO] [stdout] --> tests/tests.rs:10:1 [INFO] [stdout] | [INFO] [stdout] 10 | / lazy_static! { [INFO] [stdout] 11 | | static ref TEST_SEQ: Seq = { [INFO] [stdout] 12 | | convert(&String::from("AUGCAAGGGGGCUUUAACACAUGGGAUCCAUGCAAGGGGGCUUUAACACAUGGGAUCCAUGCAAGGGGGCUUUAACACAUGGGAUCC").into_bytes()) [INFO] [stdout] 13 | | }; [INFO] [stdout] 14 | | static ref TEST_SEQ_LEN: usize = {TEST_SEQ.len()}; [INFO] [stdout] 15 | | } [INFO] [stdout] | |_^ [INFO] [stdout] | [INFO] [stdout] = note: this warning originates in a macro (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated item 'std::sync::ONCE_INIT': the `new` function is now preferred [INFO] [stdout] --> tests/tests.rs:10:1 [INFO] [stdout] | [INFO] [stdout] 10 | / lazy_static! { [INFO] [stdout] 11 | | static ref TEST_SEQ: Seq = { [INFO] [stdout] 12 | | convert(&String::from("AUGCAAGGGGGCUUUAACACAUGGGAUCCAUGCAAGGGGGCUUUAACACAUGGGAUCCAUGCAAGGGGGCUUUAACACAUGGGAUCC").into_bytes()) [INFO] [stdout] 13 | | }; [INFO] [stdout] 14 | | static ref TEST_SEQ_LEN: usize = {TEST_SEQ.len()}; [INFO] [stdout] 15 | | } [INFO] [stdout] | |_^ [INFO] [stdout] | [INFO] [stdout] = note: this warning originates in a macro (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 5 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 1.34s [INFO] running `Command { std: "docker" "inspect" "14d4c176646237414016db8732e40089ba3a47c75ef25a5a8ede6336bc527051", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "14d4c176646237414016db8732e40089ba3a47c75ef25a5a8ede6336bc527051", kill_on_drop: false }` [INFO] [stdout] 14d4c176646237414016db8732e40089ba3a47c75ef25a5a8ede6336bc527051 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=0" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env@sha256:a636fd89d022f18117e1dc8fb37a0a009933cdbbe082814857f0e2024962d47c" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2020-07-24" "test" "--frozen", kill_on_drop: false }` [INFO] [stdout] 63e3cfa9b03ce57dbd0b03e04d341872505fe3cc0e019b4193659bc4d16a11fa [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "63e3cfa9b03ce57dbd0b03e04d341872505fe3cc0e019b4193659bc4d16a11fa", kill_on_drop: false }` [INFO] [stderr] warning: unnecessary braces around block return value [INFO] [stderr] --> tests/tests.rs:14:36 [INFO] [stderr] | [INFO] [stderr] 14 | static ref TEST_SEQ_LEN: usize = {TEST_SEQ.len()}; [INFO] [stderr] | ^^^^^^^^^^^^^^^^ help: remove these braces [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(unused_braces)]` on by default [INFO] [stderr] [INFO] [stderr] warning: use of deprecated item 'std::sync::ONCE_INIT': the `new` function is now preferred [INFO] [stderr] --> tests/tests.rs:10:1 [INFO] [stderr] | [INFO] [stderr] 10 | / lazy_static! { [INFO] [stderr] 11 | | static ref TEST_SEQ: Seq = { [INFO] [stderr] 12 | | convert(&String::from("AUGCAAGGGGGCUUUAACACAUGGGAUCCAUGCAAGGGGGCUUUAACACAUGGGAUCCAUGCAAGGGGGCUUUAACACAUGGGAUCC").into_bytes()) [INFO] [stderr] 13 | | }; [INFO] [stderr] 14 | | static ref TEST_SEQ_LEN: usize = {TEST_SEQ.len()}; [INFO] [stderr] 15 | | } [INFO] [stderr] | |_^ [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(deprecated)]` on by default [INFO] [stderr] = note: this warning originates in a macro (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stderr] [INFO] [stderr] warning: use of deprecated item 'std::sync::ONCE_INIT': the `new` function is now preferred [INFO] [stderr] --> tests/tests.rs:10:1 [INFO] [stderr] | [INFO] [stderr] 10 | / lazy_static! { [INFO] [stderr] 11 | | static ref TEST_SEQ: Seq = { [INFO] [stderr] 12 | | convert(&String::from("AUGCAAGGGGGCUUUAACACAUGGGAUCCAUGCAAGGGGGCUUUAACACAUGGGAUCCAUGCAAGGGGGCUUUAACACAUGGGAUCC").into_bytes()) [INFO] [stderr] 13 | | }; [INFO] [stderr] 14 | | static ref TEST_SEQ_LEN: usize = {TEST_SEQ.len()}; [INFO] [stderr] 15 | | } [INFO] [stderr] | |_^ [INFO] [stderr] | [INFO] [stderr] = note: this warning originates in a macro (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stderr] [INFO] [stderr] warning: use of deprecated item 'std::sync::ONCE_INIT': the `new` function is now preferred [INFO] [stderr] --> tests/tests.rs:10:1 [INFO] [stderr] | [INFO] [stderr] 10 | / lazy_static! { [INFO] [stderr] 11 | | static ref TEST_SEQ: Seq = { [INFO] [stderr] 12 | | convert(&String::from("AUGCAAGGGGGCUUUAACACAUGGGAUCCAUGCAAGGGGGCUUUAACACAUGGGAUCCAUGCAAGGGGGCUUUAACACAUGGGAUCC").into_bytes()) [INFO] [stderr] 13 | | }; [INFO] [stderr] 14 | | static ref TEST_SEQ_LEN: usize = {TEST_SEQ.len()}; [INFO] [stderr] 15 | | } [INFO] [stderr] | |_^ [INFO] [stderr] | [INFO] [stderr] = note: this warning originates in a macro (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stderr] [INFO] [stderr] warning: use of deprecated item 'std::sync::ONCE_INIT': the `new` function is now preferred [INFO] [stderr] --> tests/tests.rs:10:1 [INFO] [stderr] | [INFO] [stderr] 10 | / lazy_static! { [INFO] [stderr] 11 | | static ref TEST_SEQ: Seq = { [INFO] [stderr] 12 | | convert(&String::from("AUGCAAGGGGGCUUUAACACAUGGGAUCCAUGCAAGGGGGCUUUAACACAUGGGAUCCAUGCAAGGGGGCUUUAACACAUGGGAUCC").into_bytes()) [INFO] [stderr] 13 | | }; [INFO] [stderr] 14 | | static ref TEST_SEQ_LEN: usize = {TEST_SEQ.len()}; [INFO] [stderr] 15 | | } [INFO] [stderr] | |_^ [INFO] [stderr] | [INFO] [stderr] = note: this warning originates in a macro (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stderr] [INFO] [stderr] warning: 5 warnings emitted [INFO] [stderr] [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 0.34s [INFO] [stderr] Running /opt/rustwide/target/debug/deps/rna_algos-b55bc6f98e7c12a9 [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out [INFO] [stdout] [INFO] [stderr] Running /opt/rustwide/target/debug/deps/mccaskill-b312a0446b9c0cb2 [INFO] [stdout] [INFO] [stderr] Running /opt/rustwide/target/debug/deps/tests-e170ff5281ccc87b [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] running 1 test [INFO] [stderr] [INFO] [stderr] thread 'test_bpp_and_upp_mats' has overflowed its stack [INFO] [stderr] fatal runtime error: stack overflow [INFO] [stderr] error: test failed, to rerun pass '--test tests' [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] process didn't exit successfully: `/opt/rustwide/target/debug/deps/tests-e170ff5281ccc87b` (signal: 6, SIGABRT: process abort signal) [INFO] running `Command { std: "docker" "inspect" "63e3cfa9b03ce57dbd0b03e04d341872505fe3cc0e019b4193659bc4d16a11fa", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "63e3cfa9b03ce57dbd0b03e04d341872505fe3cc0e019b4193659bc4d16a11fa", kill_on_drop: false }` [INFO] [stdout] 63e3cfa9b03ce57dbd0b03e04d341872505fe3cc0e019b4193659bc4d16a11fa