[INFO] crate ncbitaxonomy 1.0.7 is already in cache [INFO] testing ncbitaxonomy-1.0.7 against beta-2020-07-24 for beta-1.46-1 [INFO] extracting crate ncbitaxonomy 1.0.7 into /workspace/builds/worker-13/source [INFO] validating manifest of crates.io crate ncbitaxonomy 1.0.7 on toolchain beta-2020-07-24 [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+beta-2020-07-24" "read-manifest" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] started tweaking crates.io crate ncbitaxonomy 1.0.7 [INFO] finished tweaking crates.io crate ncbitaxonomy 1.0.7 [INFO] tweaked toml for crates.io crate ncbitaxonomy 1.0.7 written to /workspace/builds/worker-13/source/Cargo.toml [INFO] crate crates.io crate ncbitaxonomy 1.0.7 already has a lockfile, it will not be regenerated [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+beta-2020-07-24" "fetch" "--locked" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-13/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-13/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=0" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env@sha256:a636fd89d022f18117e1dc8fb37a0a009933cdbbe082814857f0e2024962d47c" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2020-07-24" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 02959e839620dc34902e26536e76899917c3089cbacdd40067cd9cef8d178cca [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "02959e839620dc34902e26536e76899917c3089cbacdd40067cd9cef8d178cca", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "02959e839620dc34902e26536e76899917c3089cbacdd40067cd9cef8d178cca", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "02959e839620dc34902e26536e76899917c3089cbacdd40067cd9cef8d178cca", kill_on_drop: false }` [INFO] [stdout] 02959e839620dc34902e26536e76899917c3089cbacdd40067cd9cef8d178cca [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-13/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-13/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=0" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env@sha256:a636fd89d022f18117e1dc8fb37a0a009933cdbbe082814857f0e2024962d47c" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2020-07-24" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] a4ab090e4b38bbbdb5013f13970a5fb3339a93f87f972e2632719854558c73a1 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "a4ab090e4b38bbbdb5013f13970a5fb3339a93f87f972e2632719854558c73a1", kill_on_drop: false }` [INFO] [stderr] Compiling syn v1.0.31 [INFO] [stderr] Compiling libc v0.2.71 [INFO] [stderr] Compiling serde v1.0.112 [INFO] [stderr] Compiling feature-probe v0.1.1 [INFO] [stderr] Compiling bio v0.25.0 [INFO] [stderr] Compiling bytecount v0.3.2 [INFO] [stderr] Compiling custom_derive v0.1.7 [INFO] [stderr] Compiling libsqlite3-sys v0.18.0 [INFO] [stderr] Compiling textwrap v0.10.0 [INFO] [stderr] Compiling itertools-num v0.1.3 [INFO] [stderr] Compiling ndarray v0.12.1 [INFO] [stderr] Compiling dotenv v0.9.0 [INFO] [stderr] Compiling bv v0.10.0 [INFO] [stderr] Compiling rand v0.5.6 [INFO] [stderr] Compiling rand v0.4.6 [INFO] [stderr] Compiling backtrace v0.3.49 [INFO] [stderr] Compiling slice-deque v0.1.16 [INFO] [stderr] Compiling atty v0.2.14 [INFO] [stderr] Compiling flate2 v1.0.14 [INFO] [stderr] Compiling buf_redux v0.7.1 [INFO] [stderr] Compiling rand v0.3.23 [INFO] [stderr] Compiling statrs v0.9.0 [INFO] [stderr] Compiling parking_lot_core v0.3.1 [INFO] [stderr] Compiling parking_lot v0.6.4 [INFO] [stderr] Compiling crossbeam-channel v0.2.6 [INFO] [stderr] Compiling crossbeam v0.4.1 [INFO] [stderr] Compiling synstructure v0.12.4 [INFO] [stderr] Compiling serde_derive v1.0.112 [INFO] [stderr] Compiling diesel_derives v1.4.1 [INFO] [stderr] Compiling failure_derive v0.1.8 [INFO] [stderr] Compiling derive-new v0.5.8 [INFO] [stderr] Compiling thiserror-impl v1.0.20 [INFO] [stderr] Compiling failure v0.1.8 [INFO] [stderr] Compiling indextree v3.3.0 [INFO] [stderr] Compiling thiserror v1.0.20 [INFO] [stderr] Compiling diesel v1.4.5 [INFO] [stderr] Compiling vec_map v0.8.2 [INFO] [stderr] Compiling bstr v0.2.13 [INFO] [stderr] Compiling multimap v0.4.0 [INFO] [stderr] Compiling bio-types v0.6.0 [INFO] [stderr] Compiling seq_io v0.3.0 [INFO] [stderr] Compiling clap v2.32.0 [INFO] [stderr] Compiling csv v1.1.3 [INFO] [stderr] Compiling migrations_internals v1.4.1 [INFO] [stderr] Compiling migrations_macros v1.4.2 [INFO] [stderr] Compiling diesel_migrations v1.4.0 [INFO] [stderr] Compiling ncbitaxonomy v1.0.7 (/opt/rustwide/workdir) [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 1m 46s [INFO] running `Command { std: "docker" "inspect" "a4ab090e4b38bbbdb5013f13970a5fb3339a93f87f972e2632719854558c73a1", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "a4ab090e4b38bbbdb5013f13970a5fb3339a93f87f972e2632719854558c73a1", kill_on_drop: false }` [INFO] [stdout] a4ab090e4b38bbbdb5013f13970a5fb3339a93f87f972e2632719854558c73a1 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-13/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-13/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=0" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env@sha256:a636fd89d022f18117e1dc8fb37a0a009933cdbbe082814857f0e2024962d47c" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2020-07-24" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 6c9a0f3f20e16dd951635e1eb4ffc371d9bc4aa626441d4d157d91faac7a2dbc [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "6c9a0f3f20e16dd951635e1eb4ffc371d9bc4aa626441d4d157d91faac7a2dbc", kill_on_drop: false }` [INFO] [stderr] Compiling ncbitaxonomy v1.0.7 (/opt/rustwide/workdir) [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 7.69s [INFO] running `Command { std: "docker" "inspect" "6c9a0f3f20e16dd951635e1eb4ffc371d9bc4aa626441d4d157d91faac7a2dbc", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "6c9a0f3f20e16dd951635e1eb4ffc371d9bc4aa626441d4d157d91faac7a2dbc", kill_on_drop: false }` [INFO] [stdout] 6c9a0f3f20e16dd951635e1eb4ffc371d9bc4aa626441d4d157d91faac7a2dbc [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-13/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-13/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=0" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env@sha256:a636fd89d022f18117e1dc8fb37a0a009933cdbbe082814857f0e2024962d47c" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2020-07-24" "test" "--frozen", kill_on_drop: false }` [INFO] [stdout] 778ec6b8c6dd5f054644c60bb467df1f5e4aa29feced4fe5aa7a57dd934bc0bb [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "778ec6b8c6dd5f054644c60bb467df1f5e4aa29feced4fe5aa7a57dd934bc0bb", kill_on_drop: false }` [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 0.45s [INFO] [stderr] Running /opt/rustwide/target/debug/deps/ncbitaxonomy-bc9b9e798ee35e79 [INFO] [stdout] [INFO] [stdout] running 23 tests [INFO] [stdout] test tests::distance_to_common_ancestor_canonical ... ok [INFO] [stdout] test tests::get_lineage_sqlite ... ok [INFO] [stdout] test tests::sqlite_contains_name ... ok [INFO] [stdout] test tests::sqlite_descendants ... ok [INFO] [stdout] test tests::sqlite_contains_id ... ok [INFO] [stdout] test tests::sqlite_distance_to_common_ancestor ... ok [INFO] [stdout] test tests::sqlite_distance_to_common_ancestor_taxid ... ok [INFO] [stdout] test tests::get_name_by_id ... ok [INFO] [stdout] test tests::sqlite_get_name_by_id ... ok [INFO] [stdout] test tests::sqlite_distance_to_common_ancestor_taxid_canonical ... ok [INFO] [stdout] test tests::sqlite_taxid_descendants ... ok [INFO] [stdout] test tests::contains_id ... ok [INFO] [stdout] test tests::sqlite_distance_to_common_ancestor_canonical ... ok [INFO] [stdout] test tests::distance_to_common_ancestor_taxid ... ok [INFO] [stdout] test tests::get_node_by_id ... ok [INFO] [stdout] test tests::taxid_descendants ... ok [INFO] [stdout] test tests::get_id_by_node ... ok [INFO] [stdout] test tests::traversal ... ok [INFO] [stdout] test tests::distance_to_common_ancestor_taxid_canonical ... ok [INFO] [stdout] test tests::distance_to_common_ancestor ... ok [INFO] [stdout] test tests::get_lineage ... ok [INFO] [stdout] test tests::descendants ... ok [INFO] [stdout] test tests::contains_name ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 23 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out [INFO] [stdout] [INFO] [stderr] Running /opt/rustwide/target/debug/deps/taxonomy_filter_fastq-9db4553dde4856cb [INFO] [stdout] [INFO] [stderr] Running /opt/rustwide/target/debug/deps/taxonomy_filter_refseq-cccc14861374f98b [INFO] [stdout] running 0 tests [INFO] [stderr] Running /opt/rustwide/target/debug/deps/taxonomy_util-94bc81cdb1a025de [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out [INFO] [stdout] [INFO] [stderr] Doc-tests ncbitaxonomy [INFO] [stdout] [INFO] [stdout] running 1 test [INFO] [stdout] test src/lib.rs - NcbiFileTaxonomy::from_ncbi_files (line 105) ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 1 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out [INFO] [stdout] [INFO] running `Command { std: "docker" "inspect" "778ec6b8c6dd5f054644c60bb467df1f5e4aa29feced4fe5aa7a57dd934bc0bb", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "778ec6b8c6dd5f054644c60bb467df1f5e4aa29feced4fe5aa7a57dd934bc0bb", kill_on_drop: false }` [INFO] [stdout] 778ec6b8c6dd5f054644c60bb467df1f5e4aa29feced4fe5aa7a57dd934bc0bb