[INFO] crate hdf5-sys 0.6.1 is already in cache [INFO] testing hdf5-sys-0.6.1 against beta-2020-07-24 for beta-1.46-1 [INFO] extracting crate hdf5-sys 0.6.1 into /workspace/builds/worker-14/source [INFO] validating manifest of crates.io crate hdf5-sys 0.6.1 on toolchain beta-2020-07-24 [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+beta-2020-07-24" "read-manifest" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] started tweaking crates.io crate hdf5-sys 0.6.1 [INFO] finished tweaking crates.io crate hdf5-sys 0.6.1 [INFO] tweaked toml for crates.io crate hdf5-sys 0.6.1 written to /workspace/builds/worker-14/source/Cargo.toml [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+beta-2020-07-24" "generate-lockfile" "--manifest-path" "Cargo.toml" "-Zno-index-update", kill_on_drop: false }` [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+beta-2020-07-24" "fetch" "--locked" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-14/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-14/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=0" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env@sha256:a636fd89d022f18117e1dc8fb37a0a009933cdbbe082814857f0e2024962d47c" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2020-07-24" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] [stdout] 3b7c4786e47a3bd1158ae7bf4d3bd411668b280903406f99ee3f4b5ee131a008 [INFO] running `Command { std: "docker" "start" "-a" "3b7c4786e47a3bd1158ae7bf4d3bd411668b280903406f99ee3f4b5ee131a008", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "3b7c4786e47a3bd1158ae7bf4d3bd411668b280903406f99ee3f4b5ee131a008", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "3b7c4786e47a3bd1158ae7bf4d3bd411668b280903406f99ee3f4b5ee131a008", kill_on_drop: false }` [INFO] [stdout] 3b7c4786e47a3bd1158ae7bf4d3bd411668b280903406f99ee3f4b5ee131a008 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-14/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-14/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=0" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env@sha256:a636fd89d022f18117e1dc8fb37a0a009933cdbbe082814857f0e2024962d47c" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2020-07-24" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 60b604ac79d93de8eb2cbb5f0221424cf9813c05b539cc520d0e4325e4f9ab8b [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "60b604ac79d93de8eb2cbb5f0221424cf9813c05b539cc520d0e4325e4f9ab8b", kill_on_drop: false }` [INFO] [stderr] Compiling libloading v0.6.2 [INFO] [stderr] Compiling hdf5-sys v0.6.1 (/opt/rustwide/workdir) [INFO] [stderr] error: failed to run custom build command for `hdf5-sys v0.6.1 (/opt/rustwide/workdir)` [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] process didn't exit successfully: `/opt/rustwide/target/debug/build/hdf5-sys-0aa6c164d2076a1e/build-script-build` (exit code: 101) [INFO] [stderr] --- stdout [INFO] [stderr] Attempting to find HDF5 via pkg-config... [INFO] [stderr] cargo:rerun-if-env-changed=HDF5_NO_PKG_CONFIG [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG [INFO] [stderr] cargo:rerun-if-env-changed=HDF5_STATIC [INFO] [stderr] cargo:rerun-if-env-changed=HDF5_DYNAMIC [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_ALL_STATIC [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_ALL_DYNAMIC [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_PATH_x86_64-unknown-linux-gnu [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_PATH_x86_64_unknown_linux_gnu [INFO] [stderr] cargo:rerun-if-env-changed=HOST_PKG_CONFIG_PATH [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_PATH [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR_x86_64-unknown-linux-gnu [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR_x86_64_unknown_linux_gnu [INFO] [stderr] cargo:rerun-if-env-changed=HOST_PKG_CONFIG_LIBDIR [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR_x86_64-unknown-linux-gnu [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR_x86_64_unknown_linux_gnu [INFO] [stderr] cargo:rerun-if-env-changed=HOST_PKG_CONFIG_SYSROOT_DIR [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR [INFO] [stderr] [INFO] [stderr] --- stderr [INFO] [stderr] thread 'main' panicked at 'Unable to locate HDF5 root directory and/or headers.', build.rs:523:13 [INFO] [stderr] stack backtrace: [INFO] [stderr] 0: 0x5591a9115a35 - backtrace::backtrace::libunwind::trace::h5e2646fa3eddf2ea [INFO] [stderr] at /cargo/registry/src/github.com-1ecc6299db9ec823/backtrace-0.3.46/src/backtrace/libunwind.rs:86 [INFO] [stderr] 1: 0x5591a9115a35 - backtrace::backtrace::trace_unsynchronized::hb95dd7f77ce47877 [INFO] [stderr] at /cargo/registry/src/github.com-1ecc6299db9ec823/backtrace-0.3.46/src/backtrace/mod.rs:66 [INFO] [stderr] 2: 0x5591a9115a35 - std::sys_common::backtrace::_print_fmt::h5e71b67af43fd70d [INFO] [stderr] at src/libstd/sys_common/backtrace.rs:78 [INFO] [stderr] 3: 0x5591a9115a35 - ::fmt::hdb4a83d2b61107e5 [INFO] [stderr] at src/libstd/sys_common/backtrace.rs:59 [INFO] [stderr] 4: 0x5591a913940c - core::fmt::write::ha20e7262fa3e8a7a [INFO] [stderr] at src/libcore/fmt/mod.rs:1076 [INFO] [stderr] 5: 0x5591a9112752 - std::io::Write::write_fmt::h1aebfe8a5a79e36d [INFO] [stderr] at src/libstd/io/mod.rs:1537 [INFO] [stderr] 6: 0x5591a9117f50 - std::sys_common::backtrace::_print::h9c07314cc66ba539 [INFO] [stderr] at src/libstd/sys_common/backtrace.rs:62 [INFO] [stderr] 7: 0x5591a9117f50 - std::sys_common::backtrace::print::hd1fd65f49a2d8544 [INFO] [stderr] at src/libstd/sys_common/backtrace.rs:49 [INFO] [stderr] 8: 0x5591a9117f50 - std::panicking::default_hook::{{closure}}::h222da46485ab36fc [INFO] [stderr] at src/libstd/panicking.rs:198 [INFO] [stderr] 9: 0x5591a9117c9c - std::panicking::default_hook::hc5868949d129ed00 [INFO] [stderr] at src/libstd/panicking.rs:217 [INFO] [stderr] 10: 0x5591a9118593 - std::panicking::rust_panic_with_hook::h26a6ab8b0993c0c8 [INFO] [stderr] at src/libstd/panicking.rs:526 [INFO] [stderr] 11: 0x5591a8f27149 - std::panicking::begin_panic::hbc9a72efcf04098e [INFO] [stderr] at /rustc/6f959902b3103c49ca981fbc01871589c3498489/src/libstd/panicking.rs:456 [INFO] [stderr] 12: 0x5591a8ef74cc - build_script_build::LibrarySearcher::try_locate_hdf5_library::h33e0ee4e35e5cfb2 [INFO] [stderr] at /opt/rustwide/workdir/build.rs:523 [INFO] [stderr] 13: 0x5591a8ef887c - build_script_build::main::h262c129354482559 [INFO] [stderr] at /opt/rustwide/workdir/build.rs:601 [INFO] [stderr] 14: 0x5591a8f031ab - std::rt::lang_start::{{closure}}::hdc4ad9c8e5e4dd84 [INFO] [stderr] at /rustc/6f959902b3103c49ca981fbc01871589c3498489/src/libstd/rt.rs:67 [INFO] [stderr] 15: 0x5591a9118963 - std::rt::lang_start_internal::{{closure}}::h84a998219831fa70 [INFO] [stderr] at src/libstd/rt.rs:52 [INFO] [stderr] 16: 0x5591a9118963 - std::panicking::try::do_call::he8e1d689a3e26def [INFO] [stderr] at src/libstd/panicking.rs:348 [INFO] [stderr] 17: 0x5591a9118963 - std::panicking::try::h264b6eebc2fa7bbf [INFO] [stderr] at src/libstd/panicking.rs:325 [INFO] [stderr] 18: 0x5591a9118963 - std::panic::catch_unwind::hbf28fafa723b2128 [INFO] [stderr] at src/libstd/panic.rs:394 [INFO] [stderr] 19: 0x5591a9118963 - std::rt::lang_start_internal::he959aa59bc3ec202 [INFO] [stderr] at src/libstd/rt.rs:51 [INFO] [stderr] 20: 0x5591a8f03187 - std::rt::lang_start::h5aba3bc7a0a2e5fd [INFO] [stderr] at /rustc/6f959902b3103c49ca981fbc01871589c3498489/src/libstd/rt.rs:67 [INFO] [stderr] 21: 0x5591a8ef932a - main [INFO] [stderr] 22: 0x7f4e8c0f60b3 - __libc_start_main [INFO] [stderr] 23: 0x5591a8ef319e - _start [INFO] [stderr] 24: 0x0 - [INFO] running `Command { std: "docker" "inspect" "60b604ac79d93de8eb2cbb5f0221424cf9813c05b539cc520d0e4325e4f9ab8b", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "60b604ac79d93de8eb2cbb5f0221424cf9813c05b539cc520d0e4325e4f9ab8b", kill_on_drop: false }` [INFO] [stdout] 60b604ac79d93de8eb2cbb5f0221424cf9813c05b539cc520d0e4325e4f9ab8b