[INFO] crate hdf5 0.6.1 is already in cache [INFO] testing hdf5-0.6.1 against beta-2020-07-24 for beta-1.46-1 [INFO] extracting crate hdf5 0.6.1 into /workspace/builds/worker-3/source [INFO] validating manifest of crates.io crate hdf5 0.6.1 on toolchain beta-2020-07-24 [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+beta-2020-07-24" "read-manifest" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] started tweaking crates.io crate hdf5 0.6.1 [INFO] finished tweaking crates.io crate hdf5 0.6.1 [INFO] tweaked toml for crates.io crate hdf5 0.6.1 written to /workspace/builds/worker-3/source/Cargo.toml [INFO] crate crates.io crate hdf5 0.6.1 already has a lockfile, it will not be regenerated [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+beta-2020-07-24" "fetch" "--locked" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=0" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env@sha256:a636fd89d022f18117e1dc8fb37a0a009933cdbbe082814857f0e2024962d47c" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2020-07-24" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] [stdout] 2b01f4b9729a48a4af90672ddb0cce5d3f87abfd229682192c489d96c7d85f81 [INFO] running `Command { std: "docker" "start" "-a" "2b01f4b9729a48a4af90672ddb0cce5d3f87abfd229682192c489d96c7d85f81", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "2b01f4b9729a48a4af90672ddb0cce5d3f87abfd229682192c489d96c7d85f81", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "2b01f4b9729a48a4af90672ddb0cce5d3f87abfd229682192c489d96c7d85f81", kill_on_drop: false }` [INFO] [stdout] 2b01f4b9729a48a4af90672ddb0cce5d3f87abfd229682192c489d96c7d85f81 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=0" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env@sha256:a636fd89d022f18117e1dc8fb37a0a009933cdbbe082814857f0e2024962d47c" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2020-07-24" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] a51e08fb7683c805a455f6d70bafe7e88eb9f781f9e17ef7b0891f67931137a9 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "a51e08fb7683c805a455f6d70bafe7e88eb9f781f9e17ef7b0891f67931137a9", kill_on_drop: false }` [INFO] [stderr] Compiling libloading v0.6.0 [INFO] [stderr] Compiling syn v1.0.17 [INFO] [stderr] Compiling ndarray v0.13.0 [INFO] [stderr] Compiling scopeguard v1.1.0 [INFO] [stderr] Compiling ascii v1.0.0 [INFO] [stderr] Compiling num-complex v0.2.4 [INFO] [stderr] Compiling matrixmultiply v0.2.3 [INFO] [stderr] Compiling itertools v0.8.2 [INFO] [stderr] Compiling parking_lot_core v0.7.1 [INFO] [stderr] Compiling lock_api v0.3.4 [INFO] [stderr] Compiling parking_lot v0.10.2 [INFO] [stderr] Compiling hdf5-types v0.6.1 [INFO] [stderr] Compiling hdf5-sys v0.6.1 [INFO] [stderr] error: failed to run custom build command for `hdf5-sys v0.6.1` [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] process didn't exit successfully: `/opt/rustwide/target/debug/build/hdf5-sys-97a46720f8129a6d/build-script-build` (exit code: 101) [INFO] [stderr] --- stdout [INFO] [stderr] Attempting to find HDF5 via pkg-config... [INFO] [stderr] [INFO] [stderr] --- stderr [INFO] [stderr] thread 'main' panicked at 'Unable to locate HDF5 root directory and/or headers.', /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hdf5-sys-0.6.1/build.rs:523:13 [INFO] [stderr] stack backtrace: [INFO] [stderr] 0: 0x560ae1f03085 - backtrace::backtrace::libunwind::trace::h5e2646fa3eddf2ea [INFO] [stderr] at /cargo/registry/src/github.com-1ecc6299db9ec823/backtrace-0.3.46/src/backtrace/libunwind.rs:86 [INFO] [stderr] 1: 0x560ae1f03085 - backtrace::backtrace::trace_unsynchronized::hb95dd7f77ce47877 [INFO] [stderr] at /cargo/registry/src/github.com-1ecc6299db9ec823/backtrace-0.3.46/src/backtrace/mod.rs:66 [INFO] [stderr] 2: 0x560ae1f03085 - std::sys_common::backtrace::_print_fmt::h5e71b67af43fd70d [INFO] [stderr] at src/libstd/sys_common/backtrace.rs:78 [INFO] [stderr] 3: 0x560ae1f03085 - ::fmt::hdb4a83d2b61107e5 [INFO] [stderr] at src/libstd/sys_common/backtrace.rs:59 [INFO] [stderr] 4: 0x560ae1f26a5c - core::fmt::write::ha20e7262fa3e8a7a [INFO] [stderr] at src/libcore/fmt/mod.rs:1076 [INFO] [stderr] 5: 0x560ae1effda2 - std::io::Write::write_fmt::h1aebfe8a5a79e36d [INFO] [stderr] at src/libstd/io/mod.rs:1537 [INFO] [stderr] 6: 0x560ae1f055a0 - std::sys_common::backtrace::_print::h9c07314cc66ba539 [INFO] [stderr] at src/libstd/sys_common/backtrace.rs:62 [INFO] [stderr] 7: 0x560ae1f055a0 - std::sys_common::backtrace::print::hd1fd65f49a2d8544 [INFO] [stderr] at src/libstd/sys_common/backtrace.rs:49 [INFO] [stderr] 8: 0x560ae1f055a0 - std::panicking::default_hook::{{closure}}::h222da46485ab36fc [INFO] [stderr] at src/libstd/panicking.rs:198 [INFO] [stderr] 9: 0x560ae1f052ec - std::panicking::default_hook::hc5868949d129ed00 [INFO] [stderr] at src/libstd/panicking.rs:217 [INFO] [stderr] 10: 0x560ae1f05be3 - std::panicking::rust_panic_with_hook::h26a6ab8b0993c0c8 [INFO] [stderr] at src/libstd/panicking.rs:526 [INFO] [stderr] 11: 0x560ae1e5b329 - std::panicking::begin_panic::hca13b8e5dc424779 [INFO] [stderr] at /rustc/6f959902b3103c49ca981fbc01871589c3498489/src/libstd/panicking.rs:456 [INFO] [stderr] 12: 0x560ae1ce84cc - build_script_build::LibrarySearcher::try_locate_hdf5_library::h8d7543aeda0366db [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hdf5-sys-0.6.1/build.rs:523 [INFO] [stderr] 13: 0x560ae1ce987c - build_script_build::main::h166e82762c85a4cf [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hdf5-sys-0.6.1/build.rs:601 [INFO] [stderr] 14: 0x560ae1cf41ab - std::rt::lang_start::{{closure}}::h9b942eaed6cf9f24 [INFO] [stderr] at /rustc/6f959902b3103c49ca981fbc01871589c3498489/src/libstd/rt.rs:67 [INFO] [stderr] 15: 0x560ae1f05fb3 - std::rt::lang_start_internal::{{closure}}::h84a998219831fa70 [INFO] [stderr] at src/libstd/rt.rs:52 [INFO] [stderr] 16: 0x560ae1f05fb3 - std::panicking::try::do_call::he8e1d689a3e26def [INFO] [stderr] at src/libstd/panicking.rs:348 [INFO] [stderr] 17: 0x560ae1f05fb3 - std::panicking::try::h264b6eebc2fa7bbf [INFO] [stderr] at src/libstd/panicking.rs:325 [INFO] [stderr] 18: 0x560ae1f05fb3 - std::panic::catch_unwind::hbf28fafa723b2128 [INFO] [stderr] at src/libstd/panic.rs:394 [INFO] [stderr] 19: 0x560ae1f05fb3 - std::rt::lang_start_internal::he959aa59bc3ec202 [INFO] [stderr] at src/libstd/rt.rs:51 [INFO] [stderr] 20: 0x560ae1cf4187 - std::rt::lang_start::h09a79326d79192b8 [INFO] [stderr] at /rustc/6f959902b3103c49ca981fbc01871589c3498489/src/libstd/rt.rs:67 [INFO] [stderr] 21: 0x560ae1cea32a - main [INFO] [stderr] 22: 0x7fd9eb6f30b3 - __libc_start_main [INFO] [stderr] 23: 0x560ae1ce419e - _start [INFO] [stderr] 24: 0x0 - [INFO] [stderr] warning: build failed, waiting for other jobs to finish... [INFO] [stderr] error: build failed [INFO] running `Command { std: "docker" "inspect" "a51e08fb7683c805a455f6d70bafe7e88eb9f781f9e17ef7b0891f67931137a9", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "a51e08fb7683c805a455f6d70bafe7e88eb9f781f9e17ef7b0891f67931137a9", kill_on_drop: false }` [INFO] [stdout] a51e08fb7683c805a455f6d70bafe7e88eb9f781f9e17ef7b0891f67931137a9