[INFO] crate global-supertrees 0.1.0 is already in cache [INFO] testing global-supertrees-0.1.0 against beta-2020-07-24 for beta-1.46-1 [INFO] extracting crate global-supertrees 0.1.0 into /workspace/builds/worker-7/source [INFO] validating manifest of crates.io crate global-supertrees 0.1.0 on toolchain beta-2020-07-24 [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+beta-2020-07-24" "read-manifest" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] started tweaking crates.io crate global-supertrees 0.1.0 [INFO] finished tweaking crates.io crate global-supertrees 0.1.0 [INFO] tweaked toml for crates.io crate global-supertrees 0.1.0 written to /workspace/builds/worker-7/source/Cargo.toml [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+beta-2020-07-24" "generate-lockfile" "--manifest-path" "Cargo.toml" "-Zno-index-update", kill_on_drop: false }` [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+beta-2020-07-24" "fetch" "--locked" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=0" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env@sha256:a636fd89d022f18117e1dc8fb37a0a009933cdbbe082814857f0e2024962d47c" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2020-07-24" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] [stdout] 1c88cb314ecf8790849765309403f599554521037d7af2168dae90c43501cd0b [INFO] running `Command { std: "docker" "start" "-a" "1c88cb314ecf8790849765309403f599554521037d7af2168dae90c43501cd0b", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "1c88cb314ecf8790849765309403f599554521037d7af2168dae90c43501cd0b", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "1c88cb314ecf8790849765309403f599554521037d7af2168dae90c43501cd0b", kill_on_drop: false }` [INFO] [stdout] 1c88cb314ecf8790849765309403f599554521037d7af2168dae90c43501cd0b [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=0" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env@sha256:a636fd89d022f18117e1dc8fb37a0a009933cdbbe082814857f0e2024962d47c" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2020-07-24" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 4a20106a4889549296adb8dec4c4643784d73e1994cbaba45f2beda828e48037 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "4a20106a4889549296adb8dec4c4643784d73e1994cbaba45f2beda828e48037", kill_on_drop: false }` [INFO] [stderr] Compiling autocfg v1.0.0 [INFO] [stderr] Compiling lazy_static v1.4.0 [INFO] [stderr] Compiling maybe-uninit v2.0.0 [INFO] [stderr] Compiling cfg-if v0.1.10 [INFO] [stderr] Compiling syn v1.0.36 [INFO] [stderr] Compiling libc v0.2.74 [INFO] [stderr] Compiling rayon-core v1.7.1 [INFO] [stderr] Compiling scopeguard v1.1.0 [INFO] [stderr] Compiling memchr v2.3.3 [INFO] [stderr] Compiling serde_derive v1.0.114 [INFO] [stderr] Compiling serde v1.0.114 [INFO] [stderr] Compiling either v1.5.3 [INFO] [stderr] Compiling matrixmultiply v0.1.15 [INFO] [stderr] Compiling byteorder v1.3.4 [INFO] [stderr] Compiling rawpointer v0.1.0 [INFO] [stderr] Compiling ndarray v0.12.1 [INFO] [stderr] Compiling fixedbitset v0.1.9 [INFO] [stderr] Compiling ordermap v0.3.5 [INFO] [stderr] Compiling regex-syntax v0.6.18 [INFO] [stderr] Compiling thread_local v1.0.1 [INFO] [stderr] Compiling itertools v0.7.11 [INFO] [stderr] Compiling crossbeam-utils v0.7.2 [INFO] [stderr] Compiling memoffset v0.5.5 [INFO] [stderr] Compiling crossbeam-epoch v0.8.2 [INFO] [stderr] Compiling num-traits v0.2.12 [INFO] [stderr] Compiling num-complex v0.2.4 [INFO] [stderr] Compiling rayon v1.3.1 [INFO] [stderr] Compiling aho-corasick v0.7.13 [INFO] [stderr] Compiling petgraph v0.4.13 [INFO] [stderr] Compiling crossbeam-queue v0.2.3 [INFO] [stderr] Compiling num_cpus v1.13.0 [INFO] [stderr] Compiling crossbeam-deque v0.7.3 [INFO] [stderr] Compiling regex v1.3.9 [INFO] [stderr] Compiling bincode v1.3.1 [INFO] [stderr] Compiling global-supertrees v0.1.0 (/opt/rustwide/workdir) [INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stdout] --> src/utils.rs:54:92 [INFO] [stdout] | [INFO] [stdout] 54 | pub fn cache_mapping(mapping : &BTreeMap<[u8; 10], u32>, path : &String) -> Result<(), Box> { [INFO] [stdout] | ^^^^^ help: use `dyn`: `dyn Error` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(bare_trait_objects)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stdout] --> src/utils.rs:61:82 [INFO] [stdout] | [INFO] [stdout] 61 | pub fn load_cache_mapping(path : &String) -> Result, Box> { [INFO] [stdout] | ^^^^^ help: use `dyn`: `dyn Error` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `rayon::prelude` [INFO] [stdout] --> src/tree_merging.rs:2:5 [INFO] [stdout] | [INFO] [stdout] 2 | use rayon::prelude::*; [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `trees` [INFO] [stdout] --> src/main.rs:98:9 [INFO] [stdout] | [INFO] [stdout] 98 | let trees : Vec = distance_matrices.par_iter().map(| dm | dm.neighbour_joining()).collect(); [INFO] [stdout] | ^^^^^ help: if this is intentional, prefix it with an underscore: `_trees` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_variables)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `distance_matrices` [INFO] [stdout] --> src/tree_merging.rs:10:9 [INFO] [stdout] | [INFO] [stdout] 10 | let distance_matrices: Vec = [INFO] [stdout] | ^^^^^^^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_distance_matrices` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function is never used: `merge_distance_matrices` [INFO] [stdout] --> src/tree_merging.rs:102:4 [INFO] [stdout] | [INFO] [stdout] 102 | fn merge_distance_matrices(dms: Vec) -> TreeDistanceMatrix { [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(dead_code)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 6 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 55.22s [INFO] running `Command { std: "docker" "inspect" "4a20106a4889549296adb8dec4c4643784d73e1994cbaba45f2beda828e48037", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "4a20106a4889549296adb8dec4c4643784d73e1994cbaba45f2beda828e48037", kill_on_drop: false }` [INFO] [stdout] 4a20106a4889549296adb8dec4c4643784d73e1994cbaba45f2beda828e48037 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=0" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env@sha256:a636fd89d022f18117e1dc8fb37a0a009933cdbbe082814857f0e2024962d47c" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2020-07-24" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 9151602fb7b9e1b38f1174ab75e6885fb99bc3b10a724d945e6cc36f0ee39979 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "9151602fb7b9e1b38f1174ab75e6885fb99bc3b10a724d945e6cc36f0ee39979", kill_on_drop: false }` [INFO] [stderr] Compiling global-supertrees v0.1.0 (/opt/rustwide/workdir) [INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stdout] --> src/utils.rs:54:92 [INFO] [stdout] | [INFO] [stdout] 54 | pub fn cache_mapping(mapping : &BTreeMap<[u8; 10], u32>, path : &String) -> Result<(), Box> { [INFO] [stdout] | ^^^^^ help: use `dyn`: `dyn Error` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(bare_trait_objects)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stdout] --> src/utils.rs:61:82 [INFO] [stdout] | [INFO] [stdout] 61 | pub fn load_cache_mapping(path : &String) -> Result, Box> { [INFO] [stdout] | ^^^^^ help: use `dyn`: `dyn Error` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `rayon::prelude` [INFO] [stdout] --> src/tree_merging.rs:2:5 [INFO] [stdout] | [INFO] [stdout] 2 | use rayon::prelude::*; [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `trees` [INFO] [stdout] --> src/main.rs:98:9 [INFO] [stdout] | [INFO] [stdout] 98 | let trees : Vec = distance_matrices.par_iter().map(| dm | dm.neighbour_joining()).collect(); [INFO] [stdout] | ^^^^^ help: if this is intentional, prefix it with an underscore: `_trees` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_variables)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `distance_matrices` [INFO] [stdout] --> src/tree_merging.rs:10:9 [INFO] [stdout] | [INFO] [stdout] 10 | let distance_matrices: Vec = [INFO] [stdout] | ^^^^^^^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_distance_matrices` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function is never used: `merge_distance_matrices` [INFO] [stdout] --> src/tree_merging.rs:102:4 [INFO] [stdout] | [INFO] [stdout] 102 | fn merge_distance_matrices(dms: Vec) -> TreeDistanceMatrix { [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(dead_code)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 6 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 6.08s [INFO] running `Command { std: "docker" "inspect" "9151602fb7b9e1b38f1174ab75e6885fb99bc3b10a724d945e6cc36f0ee39979", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "9151602fb7b9e1b38f1174ab75e6885fb99bc3b10a724d945e6cc36f0ee39979", kill_on_drop: false }` [INFO] [stdout] 9151602fb7b9e1b38f1174ab75e6885fb99bc3b10a724d945e6cc36f0ee39979 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=0" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env@sha256:a636fd89d022f18117e1dc8fb37a0a009933cdbbe082814857f0e2024962d47c" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2020-07-24" "test" "--frozen", kill_on_drop: false }` [INFO] [stdout] 3a4aa55823a632e6d137c01a7109a1f249d8af9c2faa7d7b410f4fe7cae96312 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "3a4aa55823a632e6d137c01a7109a1f249d8af9c2faa7d7b410f4fe7cae96312", kill_on_drop: false }` [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/utils.rs:54:92 [INFO] [stderr] | [INFO] [stderr] 54 | pub fn cache_mapping(mapping : &BTreeMap<[u8; 10], u32>, path : &String) -> Result<(), Box> { [INFO] [stderr] | ^^^^^ help: use `dyn`: `dyn Error` [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(bare_trait_objects)]` on by default [INFO] [stderr] [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/utils.rs:61:82 [INFO] [stderr] | [INFO] [stderr] 61 | pub fn load_cache_mapping(path : &String) -> Result, Box> { [INFO] [stderr] | ^^^^^ help: use `dyn`: `dyn Error` [INFO] [stderr] [INFO] [stderr] warning: unused import: `rayon::prelude` [INFO] [stderr] --> src/tree_merging.rs:2:5 [INFO] [stderr] | [INFO] [stderr] 2 | use rayon::prelude::*; [INFO] [stderr] | ^^^^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(unused_imports)]` on by default [INFO] [stderr] [INFO] [stderr] warning: unused variable: `trees` [INFO] [stderr] --> src/main.rs:98:9 [INFO] [stderr] | [INFO] [stderr] 98 | let trees : Vec = distance_matrices.par_iter().map(| dm | dm.neighbour_joining()).collect(); [INFO] [stderr] | ^^^^^ help: if this is intentional, prefix it with an underscore: `_trees` [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(unused_variables)]` on by default [INFO] [stderr] [INFO] [stderr] warning: unused variable: `distance_matrices` [INFO] [stderr] --> src/tree_merging.rs:10:9 [INFO] [stderr] | [INFO] [stderr] 10 | let distance_matrices: Vec = [INFO] [stderr] | ^^^^^^^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_distance_matrices` [INFO] [stderr] [INFO] [stderr] warning: function is never used: `merge_distance_matrices` [INFO] [stderr] --> src/tree_merging.rs:102:4 [INFO] [stderr] | [INFO] [stderr] 102 | fn merge_distance_matrices(dms: Vec) -> TreeDistanceMatrix { [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(dead_code)]` on by default [INFO] [stderr] [INFO] [stderr] warning: 6 warnings emitted [INFO] [stderr] [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 0.11s [INFO] [stderr] Running /opt/rustwide/target/debug/deps/global_supertrees-1fa4c7e5b3537784 [INFO] [stdout] [INFO] [stdout] running 16 tests [INFO] [stdout] test test_tree_parsing::tests::test_construct_tree_from_file_2 ... ok [INFO] [stdout] test test_tree_parsing::tests::test_construct_tree_from_file_1 ... ok [INFO] [stdout] test tests::tests::test_load_tree_file ... ok [INFO] [stdout] test tests::tests::test_find_first_common_ancestor ... ok [INFO] [stdout] test test_tree_parsing::tests::test_construct_tree_from_file_3 ... ok [INFO] [stdout] test tests::tests::test_find_first_zero ... ok [INFO] [stdout] test tests::tests::test_to_dot ... ok [INFO] [stdout] test tests::tests::test_get_levels_from_root ... ok [INFO] [stdout] test tests::tests::test_batch_id_tax_mapping ... FAILED [INFO] [stdout] test tests::tests::test_merge_organisms ... FAILED [INFO] [stdout] test tests::tests::test_get_partial_tree ... ok [INFO] [stdout] test tests::tests::test_to_distance_matrix_simple ... ok [INFO] [stdout] test tests::tests::test_to_distance_matrix_medium_nested ... ok [INFO] [stdout] test tests::tests::test_to_distance_matrix_medium ... ok [INFO] [stdout] test tests::tests::test_tree_merging ... ok [INFO] [stdout] test tests::tests::test_neighbour_joining ... ok [INFO] [stdout] [INFO] [stdout] failures: [INFO] [stdout] [INFO] [stdout] ---- tests::tests::test_batch_id_tax_mapping stdout ---- [INFO] [stdout] thread 'tests::tests::test_batch_id_tax_mapping' panicked at 'file not found: Os { code: 2, kind: NotFound, message: "No such file or directory" }', src/uniprot.rs:34:34 [INFO] [stdout] stack backtrace: [INFO] [stdout] 0: 0x55f620f33295 - backtrace::backtrace::libunwind::trace::h5e2646fa3eddf2ea [INFO] [stdout] at /cargo/registry/src/github.com-1ecc6299db9ec823/backtrace-0.3.46/src/backtrace/libunwind.rs:86 [INFO] [stdout] 1: 0x55f620f33295 - backtrace::backtrace::trace_unsynchronized::hb95dd7f77ce47877 [INFO] [stdout] at /cargo/registry/src/github.com-1ecc6299db9ec823/backtrace-0.3.46/src/backtrace/mod.rs:66 [INFO] [stdout] 2: 0x55f620f33295 - std::sys_common::backtrace::_print_fmt::h5e71b67af43fd70d [INFO] [stdout] at src/libstd/sys_common/backtrace.rs:78 [INFO] [stdout] 3: 0x55f620f33295 - ::fmt::hdb4a83d2b61107e5 [INFO] [stdout] at src/libstd/sys_common/backtrace.rs:59 [INFO] [stdout] 4: 0x55f620f5d2bc - core::fmt::write::ha20e7262fa3e8a7a [INFO] [stdout] at src/libcore/fmt/mod.rs:1076 [INFO] [stdout] 5: 0x55f620cdc8f5 - std::io::Write::write_fmt::hd8ff364c7845d2d0 [INFO] [stdout] at /rustc/6f959902b3103c49ca981fbc01871589c3498489/src/libstd/io/mod.rs:1537 [INFO] [stdout] 6: 0x55f620f2d751 - std::io::impls::>::write_fmt::h1c057ef6e8762996 [INFO] [stdout] at src/libstd/io/impls.rs:176 [INFO] [stdout] 7: 0x55f620f35a00 - std::sys_common::backtrace::_print::h9c07314cc66ba539 [INFO] [stdout] at src/libstd/sys_common/backtrace.rs:62 [INFO] [stdout] 8: 0x55f620f35a00 - std::sys_common::backtrace::print::hd1fd65f49a2d8544 [INFO] [stdout] at src/libstd/sys_common/backtrace.rs:49 [INFO] [stdout] 9: 0x55f620f35a00 - std::panicking::default_hook::{{closure}}::h222da46485ab36fc [INFO] [stdout] at src/libstd/panicking.rs:198 [INFO] [stdout] 10: 0x55f620f356fa - std::panicking::default_hook::hc5868949d129ed00 [INFO] [stdout] at src/libstd/panicking.rs:214 [INFO] [stdout] 11: 0x55f620f36043 - std::panicking::rust_panic_with_hook::h26a6ab8b0993c0c8 [INFO] [stdout] at src/libstd/panicking.rs:526 [INFO] [stdout] 12: 0x55f620f35c3b - rust_begin_unwind [INFO] [stdout] at src/libstd/panicking.rs:437 [INFO] [stdout] 13: 0x55f620f5af41 - core::panicking::panic_fmt::h17139c2000299725 [INFO] [stdout] at src/libcore/panicking.rs:85 [INFO] [stdout] 14: 0x55f620f5ad63 - core::option::expect_none_failed::h972f96abb4ec8952 [INFO] [stdout] at src/libcore/option.rs:1269 [INFO] [stdout] 15: 0x55f620caa259 - core::result::Result::expect::hb3fffccd6e76d5d6 [INFO] [stdout] at /rustc/6f959902b3103c49ca981fbc01871589c3498489/src/libcore/result.rs:963 [INFO] [stdout] 16: 0x55f620cadf52 - global_supertrees::uniprot::load_mapping_file::h80cfca1c19d28f71 [INFO] [stdout] at src/uniprot.rs:34 [INFO] [stdout] 17: 0x55f620cceb20 - global_supertrees::tests::tests::test_batch_id_tax_mapping::ha4eadaaf5c4e4b3a [INFO] [stdout] at src/tests.rs:230 [INFO] [stdout] 18: 0x55f620cce9da - global_supertrees::tests::tests::test_batch_id_tax_mapping::{{closure}}::hc8f2ad18715fe30c [INFO] [stdout] at src/tests.rs:227 [INFO] [stdout] 19: 0x55f620ca4dde - core::ops::function::FnOnce::call_once::hdc64000dd65a5372 [INFO] [stdout] at /rustc/6f959902b3103c49ca981fbc01871589c3498489/src/libcore/ops/function.rs:233 [INFO] [stdout] 20: 0x55f620d03e6c - as core::ops::function::FnOnce>::call_once::h42148c33ed88c979 [INFO] [stdout] at /rustc/6f959902b3103c49ca981fbc01871589c3498489/src/liballoc/boxed.rs:1081 [INFO] [stdout] 21: 0x55f620d03e6c - as core::ops::function::FnOnce<()>>::call_once::h759dc0b09d774665 [INFO] [stdout] at /rustc/6f959902b3103c49ca981fbc01871589c3498489/src/libstd/panic.rs:318 [INFO] [stdout] 22: 0x55f620d03e6c - std::panicking::try::do_call::h676ad1fc9e9badea [INFO] [stdout] at /rustc/6f959902b3103c49ca981fbc01871589c3498489/src/libstd/panicking.rs:348 [INFO] [stdout] 23: 0x55f620d03e6c - std::panicking::try::hee36a8727a3050b0 [INFO] [stdout] at /rustc/6f959902b3103c49ca981fbc01871589c3498489/src/libstd/panicking.rs:325 [INFO] [stdout] 24: 0x55f620d03e6c - std::panic::catch_unwind::hd5d426ebd89b2542 [INFO] [stdout] at /rustc/6f959902b3103c49ca981fbc01871589c3498489/src/libstd/panic.rs:394 [INFO] [stdout] 25: 0x55f620d03e6c - test::run_test_in_process::h8dacdba4dc4cbaa5 [INFO] [stdout] at src/libtest/lib.rs:541 [INFO] [stdout] 26: 0x55f620d03e6c - test::run_test::run_test_inner::{{closure}}::hf93754afad6be40f [INFO] [stdout] at src/libtest/lib.rs:450 [INFO] [stdout] 27: 0x55f620cdbde6 - std::sys_common::backtrace::__rust_begin_short_backtrace::h2c69fab544a90730 [INFO] [stdout] at /rustc/6f959902b3103c49ca981fbc01871589c3498489/src/libstd/sys_common/backtrace.rs:130 [INFO] [stdout] 28: 0x55f620ce0e75 - std::thread::Builder::spawn_unchecked::{{closure}}::{{closure}}::hcf302fafa60d80f2 [INFO] [stdout] at /rustc/6f959902b3103c49ca981fbc01871589c3498489/src/libstd/thread/mod.rs:475 [INFO] [stdout] 29: 0x55f620ce0e75 - as core::ops::function::FnOnce<()>>::call_once::h39ede710608e817e [INFO] [stdout] at /rustc/6f959902b3103c49ca981fbc01871589c3498489/src/libstd/panic.rs:318 [INFO] [stdout] 30: 0x55f620ce0e75 - std::panicking::try::do_call::hec0b4d2faa46fbf7 [INFO] [stdout] at /rustc/6f959902b3103c49ca981fbc01871589c3498489/src/libstd/panicking.rs:348 [INFO] [stdout] 31: 0x55f620ce0e75 - std::panicking::try::h0144ba3f2539803d [INFO] [stdout] at /rustc/6f959902b3103c49ca981fbc01871589c3498489/src/libstd/panicking.rs:325 [INFO] [stdout] 32: 0x55f620ce0e75 - std::panic::catch_unwind::ha03e59eb589f857b [INFO] [stdout] at /rustc/6f959902b3103c49ca981fbc01871589c3498489/src/libstd/panic.rs:394 [INFO] [stdout] 33: 0x55f620ce0e75 - std::thread::Builder::spawn_unchecked::{{closure}}::hdeba34620a4a7a44 [INFO] [stdout] at /rustc/6f959902b3103c49ca981fbc01871589c3498489/src/libstd/thread/mod.rs:474 [INFO] [stdout] 34: 0x55f620ce0e75 - core::ops::function::FnOnce::call_once{{vtable.shim}}::h552693dbb801eadd [INFO] [stdout] at /rustc/6f959902b3103c49ca981fbc01871589c3498489/src/libcore/ops/function.rs:233 [INFO] [stdout] 35: 0x55f620f3c33a - as core::ops::function::FnOnce>::call_once::h61c24496ae624ac5 [INFO] [stdout] at /rustc/6f959902b3103c49ca981fbc01871589c3498489/src/liballoc/boxed.rs:1081 [INFO] [stdout] 36: 0x55f620f3c33a - as core::ops::function::FnOnce>::call_once::h89548957afa14049 [INFO] [stdout] at /rustc/6f959902b3103c49ca981fbc01871589c3498489/src/liballoc/boxed.rs:1081 [INFO] [stdout] 37: 0x55f620f3c33a - std::sys::unix::thread::Thread::new::thread_start::h73903fbbff5b990e [INFO] [stdout] at src/libstd/sys/unix/thread.rs:87 [INFO] [stdout] 38: 0x7fe358f14609 - start_thread [INFO] [stdout] 39: 0x7fe358e20103 - __clone [INFO] [stdout] 40: 0x0 - [INFO] [stdout] [INFO] [stdout] ---- tests::tests::test_merge_organisms stdout ---- [INFO] [stdout] thread 'tests::tests::test_merge_organisms' panicked at 'file not found: Os { code: 2, kind: NotFound, message: "No such file or directory" }', src/uniprot.rs:34:34 [INFO] [stdout] stack backtrace: [INFO] [stdout] 0: 0x55f620f33295 - backtrace::backtrace::libunwind::trace::h5e2646fa3eddf2ea [INFO] [stdout] at /cargo/registry/src/github.com-1ecc6299db9ec823/backtrace-0.3.46/src/backtrace/libunwind.rs:86 [INFO] [stdout] 1: 0x55f620f33295 - backtrace::backtrace::trace_unsynchronized::hb95dd7f77ce47877 [INFO] [stdout] at /cargo/registry/src/github.com-1ecc6299db9ec823/backtrace-0.3.46/src/backtrace/mod.rs:66 [INFO] [stdout] 2: 0x55f620f33295 - std::sys_common::backtrace::_print_fmt::h5e71b67af43fd70d [INFO] [stdout] at src/libstd/sys_common/backtrace.rs:78 [INFO] [stdout] 3: 0x55f620f33295 - ::fmt::hdb4a83d2b61107e5 [INFO] [stdout] at src/libstd/sys_common/backtrace.rs:59 [INFO] [stdout] 4: 0x55f620f5d2bc - core::fmt::write::ha20e7262fa3e8a7a [INFO] [stdout] at src/libcore/fmt/mod.rs:1076 [INFO] [stdout] 5: 0x55f620cdc8f5 - std::io::Write::write_fmt::hd8ff364c7845d2d0 [INFO] [stdout] at /rustc/6f959902b3103c49ca981fbc01871589c3498489/src/libstd/io/mod.rs:1537 [INFO] [stdout] 6: 0x55f620f2d751 - std::io::impls::>::write_fmt::h1c057ef6e8762996 [INFO] [stdout] at src/libstd/io/impls.rs:176 [INFO] [stdout] 7: 0x55f620f35a00 - std::sys_common::backtrace::_print::h9c07314cc66ba539 [INFO] [stdout] at src/libstd/sys_common/backtrace.rs:62 [INFO] [stdout] 8: 0x55f620f35a00 - std::sys_common::backtrace::print::hd1fd65f49a2d8544 [INFO] [stdout] at src/libstd/sys_common/backtrace.rs:49 [INFO] [stdout] 9: 0x55f620f35a00 - std::panicking::default_hook::{{closure}}::h222da46485ab36fc [INFO] [stdout] at src/libstd/panicking.rs:198 [INFO] [stdout] 10: 0x55f620f356fa - std::panicking::default_hook::hc5868949d129ed00 [INFO] [stdout] at src/libstd/panicking.rs:214 [INFO] [stdout] 11: 0x55f620f36043 - std::panicking::rust_panic_with_hook::h26a6ab8b0993c0c8 [INFO] [stdout] at src/libstd/panicking.rs:526 [INFO] [stdout] 12: 0x55f620f35c3b - rust_begin_unwind [INFO] [stdout] at src/libstd/panicking.rs:437 [INFO] [stdout] 13: 0x55f620f5af41 - core::panicking::panic_fmt::h17139c2000299725 [INFO] [stdout] at src/libcore/panicking.rs:85 [INFO] [stdout] 14: 0x55f620f5ad63 - core::option::expect_none_failed::h972f96abb4ec8952 [INFO] [stdout] at src/libcore/option.rs:1269 [INFO] [stdout] 15: 0x55f620caa259 - core::result::Result::expect::hb3fffccd6e76d5d6 [INFO] [stdout] at /rustc/6f959902b3103c49ca981fbc01871589c3498489/src/libcore/result.rs:963 [INFO] [stdout] 16: 0x55f620cadf52 - global_supertrees::uniprot::load_mapping_file::h80cfca1c19d28f71 [INFO] [stdout] at src/uniprot.rs:34 [INFO] [stdout] 17: 0x55f620cceda8 - global_supertrees::tests::tests::test_merge_organisms::habb61fc1a9cb4460 [INFO] [stdout] at src/tests.rs:237 [INFO] [stdout] 18: 0x55f620cced4a - global_supertrees::tests::tests::test_merge_organisms::{{closure}}::h17fe31b06d1d9180 [INFO] [stdout] at src/tests.rs:235 [INFO] [stdout] 19: 0x55f620ca4b8e - core::ops::function::FnOnce::call_once::h793d1f66a5838ac9 [INFO] [stdout] at /rustc/6f959902b3103c49ca981fbc01871589c3498489/src/libcore/ops/function.rs:233 [INFO] [stdout] 20: 0x55f620d03e6c - as core::ops::function::FnOnce>::call_once::h42148c33ed88c979 [INFO] [stdout] at /rustc/6f959902b3103c49ca981fbc01871589c3498489/src/liballoc/boxed.rs:1081 [INFO] [stdout] 21: 0x55f620d03e6c - as core::ops::function::FnOnce<()>>::call_once::h759dc0b09d774665 [INFO] [stdout] at /rustc/6f959902b3103c49ca981fbc01871589c3498489/src/libstd/panic.rs:318 [INFO] [stdout] 22: 0x55f620d03e6c - std::panicking::try::do_call::h676ad1fc9e9badea [INFO] [stdout] at /rustc/6f959902b3103c49ca981fbc01871589c3498489/src/libstd/panicking.rs:348 [INFO] [stdout] 23: 0x55f620d03e6c - std::panicking::try::hee36a8727a3050b0 [INFO] [stdout] at /rustc/6f959902b3103c49ca981fbc01871589c3498489/src/libstd/panicking.rs:325 [INFO] [stdout] 24: 0x55f620d03e6c - std::panic::catch_unwind::hd5d426ebd89b2542 [INFO] [stdout] at /rustc/6f959902b3103c49ca981fbc01871589c3498489/src/libstd/panic.rs:394 [INFO] [stdout] 25: 0x55f620d03e6c - test::run_test_in_process::h8dacdba4dc4cbaa5 [INFO] [stdout] at src/libtest/lib.rs:541 [INFO] [stdout] 26: 0x55f620d03e6c - test::run_test::run_test_inner::{{closure}}::hf93754afad6be40f [INFO] [stdout] at src/libtest/lib.rs:450 [INFO] [stdout] 27: 0x55f620cdbde6 - std::sys_common::backtrace::__rust_begin_short_backtrace::h2c69fab544a90730 [INFO] [stdout] at /rustc/6f959902b3103c49ca981fbc01871589c3498489/src/libstd/sys_common/backtrace.rs:130 [INFO] [stdout] 28: 0x55f620ce0e75 - std::thread::Builder::spawn_unchecked::{{closure}}::{{closure}}::hcf302fafa60d80f2 [INFO] [stdout] at /rustc/6f959902b3103c49ca981fbc01871589c3498489/src/libstd/thread/mod.rs:475 [INFO] [stdout] 29: 0x55f620ce0e75 - as core::ops::function::FnOnce<()>>::call_once::h39ede710608e817e [INFO] [stdout] at /rustc/6f959902b3103c49ca981fbc01871589c3498489/src/libstd/panic.rs:318 [INFO] [stdout] 30: 0x55f620ce0e75 - std::panicking::try::do_call::hec0b4d2faa46fbf7 [INFO] [stdout] at /rustc/6f959902b3103c49ca981fbc01871589c3498489/src/libstd/panicking.rs:348 [INFO] [stdout] 31: 0x55f620ce0e75 - std::panicking::try::h0144ba3f2539803d [INFO] [stdout] at /rustc/6f959902b3103c49ca981fbc01871589c3498489/src/libstd/panicking.rs:325 [INFO] [stdout] 32: 0x55f620ce0e75 - std::panic::catch_unwind::ha03e59eb589f857b [INFO] [stdout] at /rustc/6f959902b3103c49ca981fbc01871589c3498489/src/libstd/panic.rs:394 [INFO] [stdout] 33: 0x55f620ce0e75 - std::thread::Builder::spawn_unchecked::{{closure}}::hdeba34620a4a7a44 [INFO] [stdout] at /rustc/6f959902b3103c49ca981fbc01871589c3498489/src/libstd/thread/mod.rs:474 [INFO] [stdout] 34: 0x55f620ce0e75 - core::ops::function::FnOnce::call_once{{vtable.shim}}::h552693dbb801eadd [INFO] [stdout] at /rustc/6f959902b3103c49ca981fbc01871589c3498489/src/libcore/ops/function.rs:233 [INFO] [stdout] 35: 0x55f620f3c33a - as core::ops::function::FnOnce>::call_once::h61c24496ae624ac5 [INFO] [stdout] at /rustc/6f959902b3103c49ca981fbc01871589c3498489/src/liballoc/boxed.rs:1081 [INFO] [stdout] 36: 0x55f620f3c33a - as core::ops::function::FnOnce>::call_once::h89548957afa14049 [INFO] [stdout] at /rustc/6f959902b3103c49ca981fbc01871589c3498489/src/liballoc/boxed.rs:1081 [INFO] [stdout] 37: 0x55f620f3c33a - std::sys::unix::thread::Thread::new::thread_start::h73903fbbff5b990e [INFO] [stdout] at src/libstd/sys/unix/thread.rs:87 [INFO] [stdout] 38: 0x7fe358f14609 - start_thread [INFO] [stdout] 39: 0x7fe358e20103 - __clone [INFO] [stdout] 40: 0x0 - [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] failures: [INFO] [stdout] tests::tests::test_batch_id_tax_mapping [INFO] [stdout] tests::tests::test_merge_organisms [INFO] [stdout] [INFO] [stdout] test result: FAILED. 14 passed; 2 failed; 0 ignored; 0 measured; 0 filtered out [INFO] [stdout] [INFO] [stderr] error: test failed, to rerun pass '--bin global-supertrees' [INFO] running `Command { std: "docker" "inspect" "3a4aa55823a632e6d137c01a7109a1f249d8af9c2faa7d7b410f4fe7cae96312", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "3a4aa55823a632e6d137c01a7109a1f249d8af9c2faa7d7b410f4fe7cae96312", kill_on_drop: false }` [INFO] [stdout] 3a4aa55823a632e6d137c01a7109a1f249d8af9c2faa7d7b410f4fe7cae96312