[INFO] crate flann-sys 0.1.0 is already in cache [INFO] testing flann-sys-0.1.0 against beta-2020-07-24 for beta-1.46-1 [INFO] extracting crate flann-sys 0.1.0 into /workspace/builds/worker-7/source [INFO] validating manifest of crates.io crate flann-sys 0.1.0 on toolchain beta-2020-07-24 [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+beta-2020-07-24" "read-manifest" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] started tweaking crates.io crate flann-sys 0.1.0 [INFO] finished tweaking crates.io crate flann-sys 0.1.0 [INFO] tweaked toml for crates.io crate flann-sys 0.1.0 written to /workspace/builds/worker-7/source/Cargo.toml [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+beta-2020-07-24" "generate-lockfile" "--manifest-path" "Cargo.toml" "-Zno-index-update", kill_on_drop: false }` [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+beta-2020-07-24" "fetch" "--locked" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=0" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env@sha256:a636fd89d022f18117e1dc8fb37a0a009933cdbbe082814857f0e2024962d47c" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2020-07-24" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] b48ba15fc1fda6b89c8a3f47c12a88242386ed9c2a2ec10a3c08bf8e9b21562a [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "b48ba15fc1fda6b89c8a3f47c12a88242386ed9c2a2ec10a3c08bf8e9b21562a", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "b48ba15fc1fda6b89c8a3f47c12a88242386ed9c2a2ec10a3c08bf8e9b21562a", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "b48ba15fc1fda6b89c8a3f47c12a88242386ed9c2a2ec10a3c08bf8e9b21562a", kill_on_drop: false }` [INFO] [stdout] b48ba15fc1fda6b89c8a3f47c12a88242386ed9c2a2ec10a3c08bf8e9b21562a [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=0" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env@sha256:a636fd89d022f18117e1dc8fb37a0a009933cdbbe082814857f0e2024962d47c" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2020-07-24" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 2c6c8d6e275710aae2d2c8f12e2187fbc7f4704894a35b61bfd8e4ac83450047 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "2c6c8d6e275710aae2d2c8f12e2187fbc7f4704894a35b61bfd8e4ac83450047", kill_on_drop: false }` [INFO] [stderr] Compiling bindgen v0.32.3 [INFO] [stderr] Compiling proc-macro2 v0.2.3 [INFO] [stderr] Compiling quote v0.4.2 [INFO] [stderr] Compiling flann-sys v0.1.0 (/opt/rustwide/workdir) [INFO] [stderr] error: failed to run custom build command for `flann-sys v0.1.0 (/opt/rustwide/workdir)` [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] process didn't exit successfully: `/opt/rustwide/target/debug/build/flann-sys-a2a398815f9b4bc5/build-script-build` (exit code: 101) [INFO] [stderr] --- stdout [INFO] [stderr] cargo:rustc-link-lib=gomp [INFO] [stderr] cargo:rustc-link-lib=stdc++ [INFO] [stderr] running: "cmake" "/opt/rustwide/workdir/flann" "-DBUILD_EXAMPLES=OFF" "-DBUILD_TESTS=OFF" "-DBUILD_DOC=OFF" "-DBUILD_PYTHON_BINDINGS=OFF" "-DBUILD_MATLAB_BINDINGS=OFF" "-DUSE_OPENMP=ON" "-DCMAKE_INSTALL_PREFIX=/opt/rustwide/target/debug/build/flann-sys-7f7e559629dcb577/out" "-DCMAKE_C_FLAGS= -ffunction-sections -fdata-sections -fPIC -m64" "-DCMAKE_C_COMPILER=/usr/bin/cc" "-DCMAKE_CXX_FLAGS= -ffunction-sections -fdata-sections -fPIC -m64" "-DCMAKE_CXX_COMPILER=/usr/bin/c++" "-DCMAKE_ASM_FLAGS= -ffunction-sections -fdata-sections -fPIC -m64" "-DCMAKE_ASM_COMPILER=/usr/bin/cc" "-DCMAKE_BUILD_TYPE=Debug" [INFO] [stderr] -- The C compiler identification is GNU 9.3.0 [INFO] [stderr] -- The CXX compiler identification is GNU 9.3.0 [INFO] [stderr] -- Check for working C compiler: /usr/bin/cc [INFO] [stderr] -- Check for working C compiler: /usr/bin/cc -- works [INFO] [stderr] -- Detecting C compiler ABI info [INFO] [stderr] -- Detecting C compiler ABI info - done [INFO] [stderr] -- Detecting C compile features [INFO] [stderr] -- Detecting C compile features - done [INFO] [stderr] -- Check for working CXX compiler: /usr/bin/c++ [INFO] [stderr] -- Check for working CXX compiler: /usr/bin/c++ -- works [INFO] [stderr] -- Detecting CXX compiler ABI info [INFO] [stderr] -- Detecting CXX compiler ABI info - done [INFO] [stderr] -- Detecting CXX compile features [INFO] [stderr] -- Detecting CXX compile features - done [INFO] [stderr] -- Found PythonInterp: /usr/bin/python (found version "2.7.18") [INFO] [stderr] -- Could NOT find HDF5 (missing: HDF5_LIBRARIES HDF5_INCLUDE_DIRS) (found version "") [INFO] [stderr] -- Could NOT find GTest (missing: GTEST_LIBRARY GTEST_INCLUDE_DIR GTEST_MAIN_LIBRARY) [INFO] [stderr] -- Found OpenMP_C: -fopenmp (found version "4.5") [INFO] [stderr] -- Found OpenMP_CXX: -fopenmp (found version "4.5") [INFO] [stderr] -- Found OpenMP: TRUE (found version "4.5") [INFO] [stderr] -- Install prefix: /opt/rustwide/target/debug/build/flann-sys-7f7e559629dcb577/out [INFO] [stderr] -- Build type: Debug [INFO] [stderr] -- Building C bindings: ON [INFO] [stderr] -- Building examples: OFF [INFO] [stderr] -- Building tests: OFF [INFO] [stderr] -- Building documentation: OFF [INFO] [stderr] -- Building python bindings: OFF [INFO] [stderr] -- Building matlab bindings: OFF [INFO] [stderr] -- Building CUDA library: OFF [INFO] [stderr] -- Using OpenMP support: ON [INFO] [stderr] -- Using MPI support: OFF [INFO] [stderr] -- Configuring incomplete, errors occurred! [INFO] [stderr] See also "/opt/rustwide/target/debug/build/flann-sys-7f7e559629dcb577/out/build/CMakeFiles/CMakeOutput.log". [INFO] [stderr] [INFO] [stderr] --- stderr [INFO] [stderr] CMake Warning at CMakeLists.txt:78 (message): [INFO] [stderr] hdf5 library not found, some tests will not be run [INFO] [stderr] [INFO] [stderr] [INFO] [stderr] CMake Warning at CMakeLists.txt:117 (message): [INFO] [stderr] gtest library not found, some tests will not be run [INFO] [stderr] [INFO] [stderr] [INFO] [stderr] CMake Error: Could not open file for write in copy operation /opt/rustwide/workdir/flann/src/cpp/flann/config.h.tmp [INFO] [stderr] CMake Error: : System Error: Read-only file system [INFO] [stderr] CMake Error at src/cpp/CMakeLists.txt:5 (configure_file): [INFO] [stderr] configure_file Problem configuring file [INFO] [stderr] [INFO] [stderr] [INFO] [stderr] thread 'main' panicked at ' [INFO] [stderr] command did not execute successfully, got: exit code: 1 [INFO] [stderr] [INFO] [stderr] build script failed, must exit now', /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/cmake-0.1.44/src/lib.rs:885:5 [INFO] [stderr] stack backtrace: [INFO] [stderr] 0: 0x561c0a626825 - backtrace::backtrace::libunwind::trace::h5e2646fa3eddf2ea [INFO] [stderr] at /cargo/registry/src/github.com-1ecc6299db9ec823/backtrace-0.3.46/src/backtrace/libunwind.rs:86 [INFO] [stderr] 1: 0x561c0a626825 - backtrace::backtrace::trace_unsynchronized::hb95dd7f77ce47877 [INFO] [stderr] at /cargo/registry/src/github.com-1ecc6299db9ec823/backtrace-0.3.46/src/backtrace/mod.rs:66 [INFO] [stderr] 2: 0x561c0a626825 - std::sys_common::backtrace::_print_fmt::h5e71b67af43fd70d [INFO] [stderr] at src/libstd/sys_common/backtrace.rs:78 [INFO] [stderr] 3: 0x561c0a626825 - ::fmt::hdb4a83d2b61107e5 [INFO] [stderr] at src/libstd/sys_common/backtrace.rs:59 [INFO] [stderr] 4: 0x561c0a65173c - core::fmt::write::ha20e7262fa3e8a7a [INFO] [stderr] at src/libcore/fmt/mod.rs:1076 [INFO] [stderr] 5: 0x561c0a622932 - std::io::Write::write_fmt::h1aebfe8a5a79e36d [INFO] [stderr] at src/libstd/io/mod.rs:1537 [INFO] [stderr] 6: 0x561c0a629540 - std::sys_common::backtrace::_print::h9c07314cc66ba539 [INFO] [stderr] at src/libstd/sys_common/backtrace.rs:62 [INFO] [stderr] 7: 0x561c0a629540 - std::sys_common::backtrace::print::hd1fd65f49a2d8544 [INFO] [stderr] at src/libstd/sys_common/backtrace.rs:49 [INFO] [stderr] 8: 0x561c0a629540 - std::panicking::default_hook::{{closure}}::h222da46485ab36fc [INFO] [stderr] at src/libstd/panicking.rs:198 [INFO] [stderr] 9: 0x561c0a62928c - std::panicking::default_hook::hc5868949d129ed00 [INFO] [stderr] at src/libstd/panicking.rs:217 [INFO] [stderr] 10: 0x561c0a629b83 - std::panicking::rust_panic_with_hook::h26a6ab8b0993c0c8 [INFO] [stderr] at src/libstd/panicking.rs:526 [INFO] [stderr] 11: 0x561c0a62977b - rust_begin_unwind [INFO] [stderr] at src/libstd/panicking.rs:437 [INFO] [stderr] 12: 0x561c0a6296eb - std::panicking::begin_panic_fmt::h2ff295231415d4a6 [INFO] [stderr] at src/libstd/panicking.rs:391 [INFO] [stderr] 13: 0x561c0a0fa497 - cmake::fail::he26c5ade8c98772d [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/cmake-0.1.44/src/lib.rs:885 [INFO] [stderr] 14: 0x561c0a0f9dde - cmake::run::h2ce3fd99820d3769 [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/cmake-0.1.44/src/lib.rs:863 [INFO] [stderr] 15: 0x561c0a0f5797 - cmake::Config::build::h901b9a0d0f14f6ba [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/cmake-0.1.44/src/lib.rs:698 [INFO] [stderr] 16: 0x561c0a0f04e6 - build_script_build::main::h5b06dba50559a35e [INFO] [stderr] at /opt/rustwide/workdir/build.rs:30 [INFO] [stderr] 17: 0x561c0a0f290b - std::rt::lang_start::{{closure}}::hac69aca409fcd1e7 [INFO] [stderr] at /rustc/6f959902b3103c49ca981fbc01871589c3498489/src/libstd/rt.rs:67 [INFO] [stderr] 18: 0x561c0a629f53 - std::rt::lang_start_internal::{{closure}}::h84a998219831fa70 [INFO] [stderr] at src/libstd/rt.rs:52 [INFO] [stderr] 19: 0x561c0a629f53 - std::panicking::try::do_call::he8e1d689a3e26def [INFO] [stderr] at src/libstd/panicking.rs:348 [INFO] [stderr] 20: 0x561c0a629f53 - std::panicking::try::h264b6eebc2fa7bbf [INFO] [stderr] at src/libstd/panicking.rs:325 [INFO] [stderr] 21: 0x561c0a629f53 - std::panic::catch_unwind::hbf28fafa723b2128 [INFO] [stderr] at src/libstd/panic.rs:394 [INFO] [stderr] 22: 0x561c0a629f53 - std::rt::lang_start_internal::he959aa59bc3ec202 [INFO] [stderr] at src/libstd/rt.rs:51 [INFO] [stderr] 23: 0x561c0a0f28e7 - std::rt::lang_start::h6afa1cfb7d509590 [INFO] [stderr] at /rustc/6f959902b3103c49ca981fbc01871589c3498489/src/libstd/rt.rs:67 [INFO] [stderr] 24: 0x561c0a0f08ea - main [INFO] [stderr] 25: 0x7f6222d860b3 - __libc_start_main [INFO] [stderr] 26: 0x561c0a0f019e - _start [INFO] [stderr] 27: 0x0 - [INFO] running `Command { std: "docker" "inspect" "2c6c8d6e275710aae2d2c8f12e2187fbc7f4704894a35b61bfd8e4ac83450047", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "2c6c8d6e275710aae2d2c8f12e2187fbc7f4704894a35b61bfd8e4ac83450047", kill_on_drop: false }` [INFO] [stdout] 2c6c8d6e275710aae2d2c8f12e2187fbc7f4704894a35b61bfd8e4ac83450047