[INFO] crate bio-jtools 2020.6.11 is already in cache
[INFO] testing bio-jtools-2020.6.11 against beta-2020-07-24 for beta-1.46-1
[INFO] extracting crate bio-jtools 2020.6.11 into /workspace/builds/worker-7/source
[INFO] validating manifest of crates.io crate bio-jtools 2020.6.11 on toolchain beta-2020-07-24
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+beta-2020-07-24" "read-manifest" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] started tweaking crates.io crate bio-jtools 2020.6.11
[INFO] finished tweaking crates.io crate bio-jtools 2020.6.11
[INFO] tweaked toml for crates.io crate bio-jtools 2020.6.11 written to /workspace/builds/worker-7/source/Cargo.toml
[INFO] crate crates.io crate bio-jtools 2020.6.11 already has a lockfile, it will not be regenerated
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+beta-2020-07-24" "fetch" "--locked" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=0" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env@sha256:a636fd89d022f18117e1dc8fb37a0a009933cdbbe082814857f0e2024962d47c" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2020-07-24" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] c323b73f6c3fd42f30eea2a683955b5d7cb5ff9cdd4ccc49a1783771da844375
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] running `Command { std: "docker" "start" "-a" "c323b73f6c3fd42f30eea2a683955b5d7cb5ff9cdd4ccc49a1783771da844375", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "c323b73f6c3fd42f30eea2a683955b5d7cb5ff9cdd4ccc49a1783771da844375", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "c323b73f6c3fd42f30eea2a683955b5d7cb5ff9cdd4ccc49a1783771da844375", kill_on_drop: false }`
[INFO] [stdout] c323b73f6c3fd42f30eea2a683955b5d7cb5ff9cdd4ccc49a1783771da844375
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=0" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env@sha256:a636fd89d022f18117e1dc8fb37a0a009933cdbbe082814857f0e2024962d47c" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2020-07-24" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 1272512ef3619215552b20e248a3dbfcd5cdc0dfd1826fe4d743072bb1f17f5f
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] running `Command { std: "docker" "start" "-a" "1272512ef3619215552b20e248a3dbfcd5cdc0dfd1826fe4d743072bb1f17f5f", kill_on_drop: false }`
[INFO] [stderr]    Compiling proc-macro2 v1.0.8
[INFO] [stderr]    Compiling syn v1.0.14
[INFO] [stderr]    Compiling cc v1.0.50
[INFO] [stderr]    Compiling memchr v2.3.0
[INFO] [stderr]    Compiling semver v0.1.20
[INFO] [stderr]    Compiling doc-comment v0.3.1
[INFO] [stderr]    Compiling ndarray v0.13.0
[INFO] [stderr]    Compiling bio v0.30.0
[INFO] [stderr]    Compiling ordermap v0.3.5
[INFO] [stderr]    Compiling bit-vec v0.5.1
[INFO] [stderr]    Compiling yaml-rust v0.3.5
[INFO] [stderr]    Compiling bytecount v0.6.0
[INFO] [stderr]    Compiling strum v0.16.0
[INFO] [stderr]    Compiling custom_derive v0.1.7
[INFO] [stderr]    Compiling rust-lapper v0.4.4
[INFO] [stderr]    Compiling num-traits v0.2.11
[INFO] [stderr]    Compiling num-integer v0.1.42
[INFO] [stderr]    Compiling bv v0.11.0
[INFO] [stderr]    Compiling miniz_oxide v0.3.6
[INFO] [stderr]    Compiling bit-set v0.5.1
[INFO] [stderr]    Compiling rand_os v0.1.3
[INFO] [stderr]    Compiling atty v0.2.14
[INFO] [stderr]    Compiling dirs v1.0.5
[INFO] [stderr]    Compiling time v0.1.43
[INFO] [stderr]    Compiling regex-automata v0.1.8
[INFO] [stderr]    Compiling rustc_version v0.1.7
[INFO] [stderr]    Compiling term v0.5.2
[INFO] [stderr]    Compiling rand v0.6.5
[INFO] [stderr]    Compiling petgraph v0.4.13
[INFO] [stderr]    Compiling aho-corasick v0.7.8
[INFO] [stderr]    Compiling csv-core v0.1.6
[INFO] [stderr]    Compiling newtype_derive v0.1.6
[INFO] [stderr]    Compiling flate2 v1.0.13
[INFO] [stderr]    Compiling quote v1.0.2
[INFO] [stderr]    Compiling backtrace-sys v0.1.32
[INFO] [stderr]    Compiling lzma-sys v0.1.16
[INFO] [stderr]    Compiling bzip2-sys v0.1.8+1.0.8
[INFO] [stderr]    Compiling statrs v0.11.0
[INFO] [stderr]    Compiling regex v1.3.9
[INFO] [stderr]    Compiling num-complex v0.2.4
[INFO] [stderr]    Compiling ordered-float v1.0.2
[INFO] [stderr]    Compiling itertools-num v0.1.3
[INFO] [stderr]    Compiling approx v0.3.2
[INFO] [stderr]    Compiling xz2 v0.1.6
[INFO] [stderr]    Compiling chrono v0.4.11
[INFO] [stderr]    Compiling backtrace v0.3.43
[INFO] [stderr]    Compiling bzip2 v0.3.3
[INFO] [stderr]    Compiling needletail v0.3.2
[INFO] [stderr]    Compiling snafu v0.5.0
[INFO] [stderr]    Compiling serde_derive v1.0.104
[INFO] [stderr]    Compiling getset v0.0.9
[INFO] [stderr]    Compiling strum_macros v0.16.0
[INFO] [stderr]    Compiling serde v1.0.104
[INFO] [stderr]    Compiling bstr v0.2.11
[INFO] [stderr]    Compiling vec_map v0.8.1
[INFO] [stderr]    Compiling multimap v0.6.0
[INFO] [stderr]    Compiling bio-types v0.5.1
[INFO] [stderr]    Compiling clap v2.33.0
[INFO] [stderr]    Compiling csv v1.1.3
[INFO] [stderr]    Compiling prettytable-rs v0.8.0
[INFO] [stderr]    Compiling bio-jtools v2020.6.11 (/opt/rustwide/workdir)
[INFO] [stdout] warning: unused variable: `o`
[INFO] [stdout]    --> src/main.rs:174:24
[INFO] [stdout]     |
[INFO] [stdout] 174 |     } else if let Some(o) = _matches.subcommand_matches("kspec") {
[INFO] [stdout]     |                        ^ help: if this is intentional, prefix it with an underscore: `_o`
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(unused_variables)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `o`
[INFO] [stdout]    --> src/main.rs:176:24
[INFO] [stdout]     |
[INFO] [stdout] 176 |     } else if let Some(o) = _matches.subcommand_matches("filter") {
[INFO] [stdout]     |                        ^ help: if this is intentional, prefix it with an underscore: `_o`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `seqtype`
[INFO] [stdout]    --> src/data/mod.rs:290:31
[INFO] [stdout]     |
[INFO] [stdout] 290 | pub fn organize(indir: &Path, seqtype: &str, dryrun: bool, verbose: bool) {
[INFO] [stdout]     |                               ^^^^^^^ help: if this is intentional, prefix it with an underscore: `_seqtype`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: 3 warnings emitted
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Finished dev [unoptimized + debuginfo] target(s) in 1m 19s
[INFO] running `Command { std: "docker" "inspect" "1272512ef3619215552b20e248a3dbfcd5cdc0dfd1826fe4d743072bb1f17f5f", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "1272512ef3619215552b20e248a3dbfcd5cdc0dfd1826fe4d743072bb1f17f5f", kill_on_drop: false }`
[INFO] [stdout] 1272512ef3619215552b20e248a3dbfcd5cdc0dfd1826fe4d743072bb1f17f5f
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=0" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env@sha256:a636fd89d022f18117e1dc8fb37a0a009933cdbbe082814857f0e2024962d47c" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2020-07-24" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 2399e93f9800c4daf08764d856f4b049dcd1338afaecfcb45b1e09189af203be
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] running `Command { std: "docker" "start" "-a" "2399e93f9800c4daf08764d856f4b049dcd1338afaecfcb45b1e09189af203be", kill_on_drop: false }`
[INFO] [stderr]    Compiling bio-jtools v2020.6.11 (/opt/rustwide/workdir)
[INFO] [stdout] warning: unused variable: `o`
[INFO] [stdout]    --> src/main.rs:174:24
[INFO] [stdout]     |
[INFO] [stdout] 174 |     } else if let Some(o) = _matches.subcommand_matches("kspec") {
[INFO] [stdout]     |                        ^ help: if this is intentional, prefix it with an underscore: `_o`
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(unused_variables)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `o`
[INFO] [stdout]    --> src/main.rs:176:24
[INFO] [stdout]     |
[INFO] [stdout] 176 |     } else if let Some(o) = _matches.subcommand_matches("filter") {
[INFO] [stdout]     |                        ^ help: if this is intentional, prefix it with an underscore: `_o`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `seqtype`
[INFO] [stdout]    --> src/data/mod.rs:290:31
[INFO] [stdout]     |
[INFO] [stdout] 290 | pub fn organize(indir: &Path, seqtype: &str, dryrun: bool, verbose: bool) {
[INFO] [stdout]     |                               ^^^^^^^ help: if this is intentional, prefix it with an underscore: `_seqtype`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: 3 warnings emitted
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Finished test [unoptimized + debuginfo] target(s) in 1.99s
[INFO] running `Command { std: "docker" "inspect" "2399e93f9800c4daf08764d856f4b049dcd1338afaecfcb45b1e09189af203be", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "2399e93f9800c4daf08764d856f4b049dcd1338afaecfcb45b1e09189af203be", kill_on_drop: false }`
[INFO] [stdout] 2399e93f9800c4daf08764d856f4b049dcd1338afaecfcb45b1e09189af203be
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=0" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env@sha256:a636fd89d022f18117e1dc8fb37a0a009933cdbbe082814857f0e2024962d47c" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2020-07-24" "test" "--frozen", kill_on_drop: false }`
[INFO] [stdout] c7fba7c99c95ea56ecbb95ffa328169c684ac1e829703eed3d08977589a38f0c
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] running `Command { std: "docker" "start" "-a" "c7fba7c99c95ea56ecbb95ffa328169c684ac1e829703eed3d08977589a38f0c", kill_on_drop: false }`
[INFO] [stderr] warning: unused variable: `o`
[INFO] [stderr]    --> src/main.rs:174:24
[INFO] [stderr]     |
[INFO] [stderr] 174 |     } else if let Some(o) = _matches.subcommand_matches("kspec") {
[INFO] [stderr]     |                        ^ help: if this is intentional, prefix it with an underscore: `_o`
[INFO] [stderr]     |
[INFO] [stderr]     = note: `#[warn(unused_variables)]` on by default
[INFO] [stderr] 
[INFO] [stderr] warning: unused variable: `o`
[INFO] [stderr]    --> src/main.rs:176:24
[INFO] [stderr]     |
[INFO] [stderr] 176 |     } else if let Some(o) = _matches.subcommand_matches("filter") {
[INFO] [stderr]     |                        ^ help: if this is intentional, prefix it with an underscore: `_o`
[INFO] [stderr] 
[INFO] [stderr] warning: unused variable: `seqtype`
[INFO] [stderr]    --> src/data/mod.rs:290:31
[INFO] [stderr]     |
[INFO] [stderr] 290 | pub fn organize(indir: &Path, seqtype: &str, dryrun: bool, verbose: bool) {
[INFO] [stderr]     |                               ^^^^^^^ help: if this is intentional, prefix it with an underscore: `_seqtype`
[INFO] [stderr] 
[INFO] [stderr] warning: 3 warnings emitted
[INFO] [stderr] 
[INFO] [stderr]     Finished test [unoptimized + debuginfo] target(s) in 0.30s
[INFO] [stderr]      Running /opt/rustwide/target/debug/deps/bjt-a40b071f23d93949
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out
[INFO] [stdout] 
[INFO] running `Command { std: "docker" "inspect" "c7fba7c99c95ea56ecbb95ffa328169c684ac1e829703eed3d08977589a38f0c", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "c7fba7c99c95ea56ecbb95ffa328169c684ac1e829703eed3d08977589a38f0c", kill_on_drop: false }`
[INFO] [stdout] c7fba7c99c95ea56ecbb95ffa328169c684ac1e829703eed3d08977589a38f0c