[INFO] updating cached repository https://github.com/zaeleus/noodles-count-features [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "-c" "remote.origin.fetch=refs/heads/*:refs/heads/*" "fetch" "origin" "--force" "--prune", kill_on_drop: false }` [INFO] [stderr] From https://github.com/zaeleus/noodles-count-features [INFO] [stderr] fe7961d..71fb6f6 master -> master [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] 71fb6f6e029057032fd5cbb704de6b17046feefb [INFO] testing zaeleus/noodles-count-features against beta-2020-07-24 for beta-1.46-1 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fzaeleus%2Fnoodles-count-features" "/workspace/builds/worker-5/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-5/source'... [INFO] [stderr] done. [INFO] validating manifest of git repo https://github.com/zaeleus/noodles-count-features on toolchain beta-2020-07-24 [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+beta-2020-07-24" "read-manifest" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] started tweaking git repo https://github.com/zaeleus/noodles-count-features [INFO] finished tweaking git repo https://github.com/zaeleus/noodles-count-features [INFO] tweaked toml for git repo https://github.com/zaeleus/noodles-count-features written to /workspace/builds/worker-5/source/Cargo.toml [INFO] crate git repo https://github.com/zaeleus/noodles-count-features already has a lockfile, it will not be regenerated [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+beta-2020-07-24" "fetch" "--locked" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Updating git repository `https://github.com/zaeleus/interval-tree.git` [INFO] [stderr] Updating git repository `https://github.com/zaeleus/noodles.git` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=0" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env@sha256:a636fd89d022f18117e1dc8fb37a0a009933cdbbe082814857f0e2024962d47c" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2020-07-24" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] a69985f9f38e5bc7e87831cac9077b8c9eb299fc41774ad51932888c7457d24b [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "a69985f9f38e5bc7e87831cac9077b8c9eb299fc41774ad51932888c7457d24b", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "a69985f9f38e5bc7e87831cac9077b8c9eb299fc41774ad51932888c7457d24b", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "a69985f9f38e5bc7e87831cac9077b8c9eb299fc41774ad51932888c7457d24b", kill_on_drop: false }` [INFO] [stdout] a69985f9f38e5bc7e87831cac9077b8c9eb299fc41774ad51932888c7457d24b [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=0" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env@sha256:a636fd89d022f18117e1dc8fb37a0a009933cdbbe082814857f0e2024962d47c" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2020-07-24" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] a9bd79194db8a0fb20459214ded42d0dd5c72df9d6ce52964d0af5ab9af0c585 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "a9bd79194db8a0fb20459214ded42d0dd5c72df9d6ce52964d0af5ab9af0c585", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Compiling syn v1.0.34 [INFO] [stderr] Compiling bit-vec v0.6.2 [INFO] [stderr] Compiling pin-project-lite v0.1.7 [INFO] [stderr] Compiling interval-tree v0.2.0 (https://github.com/zaeleus/interval-tree.git?rev=e303d7254d53de5c418d6079d4b66c30c10958d4#e303d725) [INFO] [stderr] Compiling noodles-gff v0.1.0 (https://github.com/zaeleus/noodles.git?rev=ade2b8df46249844d9183d870053ddbc241d6fe9#ade2b8df) [INFO] [stderr] Compiling num-traits v0.2.12 [INFO] [stderr] Compiling num-integer v0.1.43 [INFO] [stderr] Compiling indexmap v1.4.0 [INFO] [stderr] Compiling time v0.1.43 [INFO] [stderr] Compiling atty v0.2.14 [INFO] [stderr] Compiling proc-macro2 v1.0.18 [INFO] [stderr] Compiling flate2 v1.0.16 [INFO] [stderr] Compiling tokio v0.2.21 [INFO] [stderr] Compiling clap v2.33.1 [INFO] [stderr] Compiling env_logger v0.7.1 [INFO] [stderr] Compiling noodles-bgzf v0.1.0 (https://github.com/zaeleus/noodles.git?rev=ade2b8df46249844d9183d870053ddbc241d6fe9#ade2b8df) [INFO] [stderr] Compiling quote v1.0.7 [INFO] [stderr] Compiling noodles-sam v0.1.0 (https://github.com/zaeleus/noodles.git?rev=ade2b8df46249844d9183d870053ddbc241d6fe9#ade2b8df) [INFO] [stderr] Compiling chrono v0.4.13 [INFO] [stderr] Compiling noodles v0.1.0 (https://github.com/zaeleus/noodles.git?rev=ade2b8df46249844d9183d870053ddbc241d6fe9#ade2b8df) [INFO] [stderr] Compiling noodles-bam v0.1.0 (https://github.com/zaeleus/noodles.git?rev=ade2b8df46249844d9183d870053ddbc241d6fe9#ade2b8df) [INFO] [stderr] Compiling git-testament-derive v0.1.10 [INFO] [stderr] Compiling git-testament v0.1.9 [INFO] [stderr] Compiling noodles-squab v0.1.0 (/opt/rustwide/workdir) [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 41.62s [INFO] running `Command { std: "docker" "inspect" "a9bd79194db8a0fb20459214ded42d0dd5c72df9d6ce52964d0af5ab9af0c585", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "a9bd79194db8a0fb20459214ded42d0dd5c72df9d6ce52964d0af5ab9af0c585", kill_on_drop: false }` [INFO] [stdout] a9bd79194db8a0fb20459214ded42d0dd5c72df9d6ce52964d0af5ab9af0c585 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=0" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env@sha256:a636fd89d022f18117e1dc8fb37a0a009933cdbbe082814857f0e2024962d47c" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2020-07-24" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 8acb87a7d916aa8edd790c7794a8e639f23d5be4778dbd3b4ea4ea8867bbce19 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "8acb87a7d916aa8edd790c7794a8e639f23d5be4778dbd3b4ea4ea8867bbce19", kill_on_drop: false }` [INFO] [stderr] Compiling noodles-squab v0.1.0 (/opt/rustwide/workdir) [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 3.54s [INFO] running `Command { std: "docker" "inspect" "8acb87a7d916aa8edd790c7794a8e639f23d5be4778dbd3b4ea4ea8867bbce19", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "8acb87a7d916aa8edd790c7794a8e639f23d5be4778dbd3b4ea4ea8867bbce19", kill_on_drop: false }` [INFO] [stdout] 8acb87a7d916aa8edd790c7794a8e639f23d5be4778dbd3b4ea4ea8867bbce19 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=0" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env@sha256:a636fd89d022f18117e1dc8fb37a0a009933cdbbe082814857f0e2024962d47c" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2020-07-24" "test" "--frozen", kill_on_drop: false }` [INFO] [stdout] bfe041ae4da353d8979b69a084c517744713d773b1e594f63c3595ff3c52d6d8 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "bfe041ae4da353d8979b69a084c517744713d773b1e594f63c3595ff3c52d6d8", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 29.73s [INFO] [stderr] Running /opt/rustwide/target/debug/deps/noodles_squab-d0e3e0f99bc1a1a3 [INFO] [stdout] [INFO] [stdout] running 24 tests [INFO] [stdout] test count::context::tests::test_add ... ok [INFO] [stdout] test count::reader::tests::test_read_counts ... ok [INFO] [stdout] test count::tests::test_get_reference ... ok [INFO] [stdout] test count::writer::tests::test_write_counts ... ok [INFO] [stdout] test feature::tests::test_end ... ok [INFO] [stdout] test feature::tests::test_reference_sequence_name ... ok [INFO] [stdout] test record_pairs::pair_position::tests::test_mate ... ok [INFO] [stdout] test record_pairs::pair_position::tests::test_try_from_flag ... ok [INFO] [stdout] test feature::tests::test_len ... ok [INFO] [stdout] test feature::tests::test_start ... ok [INFO] [stdout] test feature::tests::test_is_empty ... ok [INFO] [stdout] test normalization::tpm::tests::test_calculate_tpms_with_missing_feature ... ok [INFO] [stdout] test normalization::tests::test_sum_nonoverlapping_feature_lengths ... ok [INFO] [stdout] test normalization::fpkm::tests::test_calculate_fpkms ... ok [INFO] [stdout] test normalization::writer::tests::test_write_values ... ok [INFO] [stdout] test normalization::method::tests::test_from_str ... ok [INFO] [stdout] test feature::tests::test_strand ... ok [INFO] [stderr] Running /opt/rustwide/target/debug/deps/noodles_squab-36fb3f3acd572c9d [INFO] [stdout] test normalization::fpkm::tests::test_calculate_fpkms_with_missing_feature ... ok [INFO] [stdout] test test_cigar_to_intervals::test_next ... ok [INFO] [stdout] test test_cigar_to_intervals::test_new ... ok [INFO] [stdout] test normalization::tests::test_merge_features ... ok [INFO] [stdout] test tests::test_read_features ... ok [INFO] [stdout] test count::writer::tests::test_write_stats ... ok [INFO] [stdout] test normalization::tpm::tests::test_calculate_tpms ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 24 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out [INFO] [stdout] [INFO] [stderr] Doc-tests noodles-squab [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out [INFO] [stdout] [INFO] running `Command { std: "docker" "inspect" "bfe041ae4da353d8979b69a084c517744713d773b1e594f63c3595ff3c52d6d8", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "bfe041ae4da353d8979b69a084c517744713d773b1e594f63c3595ff3c52d6d8", kill_on_drop: false }` [INFO] [stdout] bfe041ae4da353d8979b69a084c517744713d773b1e594f63c3595ff3c52d6d8