[INFO] updating cached repository https://github.com/stjude/fqlib [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "-c" "remote.origin.fetch=refs/heads/*:refs/heads/*" "fetch" "origin" "--force" "--prune", kill_on_drop: false }` [INFO] [stderr] From https://github.com/stjude/fqlib [INFO] [stderr] fe5d4b8..311f11d master -> master [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] 311f11ddde88a6f20fbb9a7b5624fd42b8c16609 [INFO] testing stjude/fqlib against beta-2020-07-24 for beta-1.46-1 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fstjude%2Ffqlib" "/workspace/builds/worker-14/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-14/source'... [INFO] [stderr] done. [INFO] validating manifest of git repo https://github.com/stjude/fqlib on toolchain beta-2020-07-24 [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+beta-2020-07-24" "read-manifest" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] started tweaking git repo https://github.com/stjude/fqlib [INFO] finished tweaking git repo https://github.com/stjude/fqlib [INFO] tweaked toml for git repo https://github.com/stjude/fqlib written to /workspace/builds/worker-14/source/Cargo.toml [INFO] crate git repo https://github.com/stjude/fqlib already has a lockfile, it will not be regenerated [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+beta-2020-07-24" "fetch" "--locked" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-14/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-14/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=0" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env@sha256:a636fd89d022f18117e1dc8fb37a0a009933cdbbe082814857f0e2024962d47c" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2020-07-24" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] [stdout] d9424897cb909c38a6787ff25652f498f06c06eed73a8fda049f22d063d5dce4 [INFO] running `Command { std: "docker" "start" "-a" "d9424897cb909c38a6787ff25652f498f06c06eed73a8fda049f22d063d5dce4", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "d9424897cb909c38a6787ff25652f498f06c06eed73a8fda049f22d063d5dce4", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "d9424897cb909c38a6787ff25652f498f06c06eed73a8fda049f22d063d5dce4", kill_on_drop: false }` [INFO] [stdout] d9424897cb909c38a6787ff25652f498f06c06eed73a8fda049f22d063d5dce4 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-14/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-14/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=0" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env@sha256:a636fd89d022f18117e1dc8fb37a0a009933cdbbe082814857f0e2024962d47c" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2020-07-24" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 9425156c95d79ba480a0439718ccb857e53ac4bf440203f120aed3c75d1071ed [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "9425156c95d79ba480a0439718ccb857e53ac4bf440203f120aed3c75d1071ed", kill_on_drop: false }` [INFO] [stderr] Compiling syn v1.0.37 [INFO] [stderr] Compiling anyhow v1.0.32 [INFO] [stderr] Compiling bbloom v0.1.0 (https://github.com/zaeleus/bbloom.git?tag=v0.1.0#2c9f6163) [INFO] [stderr] Compiling regex v1.3.9 [INFO] [stderr] Compiling flate2 v1.0.16 [INFO] [stderr] Compiling rand_pcg v0.2.1 [INFO] [stderr] Compiling clap v2.33.1 [INFO] [stderr] Compiling rand v0.7.3 [INFO] [stderr] Compiling rand_distr v0.2.2 [INFO] [stderr] Compiling env_logger v0.7.1 [INFO] [stderr] Compiling git-testament-derive v0.1.10 [INFO] [stderr] Compiling git-testament v0.1.9 [INFO] [stderr] Compiling fqlib v0.4.0 (/opt/rustwide/workdir) [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 28.95s [INFO] running `Command { std: "docker" "inspect" "9425156c95d79ba480a0439718ccb857e53ac4bf440203f120aed3c75d1071ed", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "9425156c95d79ba480a0439718ccb857e53ac4bf440203f120aed3c75d1071ed", kill_on_drop: false }` [INFO] [stdout] 9425156c95d79ba480a0439718ccb857e53ac4bf440203f120aed3c75d1071ed [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-14/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-14/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=0" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env@sha256:a636fd89d022f18117e1dc8fb37a0a009933cdbbe082814857f0e2024962d47c" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2020-07-24" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 742fc04f69779c67c71ee09580a5920a4e15c7e7daa20e2d4341809fbc673ba3 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "742fc04f69779c67c71ee09580a5920a4e15c7e7daa20e2d4341809fbc673ba3", kill_on_drop: false }` [INFO] [stderr] Compiling fqlib v0.4.0 (/opt/rustwide/workdir) [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 4.12s [INFO] running `Command { std: "docker" "inspect" "742fc04f69779c67c71ee09580a5920a4e15c7e7daa20e2d4341809fbc673ba3", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "742fc04f69779c67c71ee09580a5920a4e15c7e7daa20e2d4341809fbc673ba3", kill_on_drop: false }` [INFO] [stdout] 742fc04f69779c67c71ee09580a5920a4e15c7e7daa20e2d4341809fbc673ba3 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-14/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-14/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=0" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env@sha256:a636fd89d022f18117e1dc8fb37a0a009933cdbbe082814857f0e2024962d47c" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2020-07-24" "test" "--frozen", kill_on_drop: false }` [INFO] [stdout] af46f1818a3527f51fcc5b5b53493c2db40a590c2901e9324ca1ad9c31f9da65 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "af46f1818a3527f51fcc5b5b53493c2db40a590c2901e9324ca1ad9c31f9da65", kill_on_drop: false }` [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 0.16s [INFO] [stderr] Running /opt/rustwide/target/debug/deps/fqlib-fca7dcabfe5abf08 [INFO] [stdout] [INFO] [stdout] running 49 tests [INFO] [stdout] test distributions::character::tests::test_sample ... ok [INFO] [stdout] test commands::filter::tests::test_read_names ... ok [INFO] [stdout] test distributions::quality_scores::tests::test_clamp ... ok [INFO] [stdout] test commands::lint::tests::test_build_error_message ... ok [INFO] [stdout] test fastq::reader::tests::test_read_record ... ok [INFO] [stdout] test commands::lint::tests::test_build_error_message_with_no_col_no ... ok [INFO] [stdout] test commands::filter::tests::test_name_id ... ok [INFO] [stdout] test commands::filter::tests::test_copy_filtered ... ok [INFO] [stdout] test validators::paired::names::tests::test_code ... ok [INFO] [stdout] test validators::single::alphabet::tests::test_code ... ok [INFO] [stdout] test validators::paired::names::tests::test_name ... ok [INFO] [stdout] test generator::tests::test_next_record ... ok [INFO] [stdout] test validators::single::consistent_seq_qual::tests::test_code ... ok [INFO] [stdout] test validators::single::alphabet::tests::test_validate ... ok [INFO] [stdout] test validators::single::complete::tests::test_level ... ok [INFO] [stdout] test validators::single::consistent_seq_qual::tests::test_level ... ok [INFO] [stdout] test validators::single::consistent_seq_qual::tests::test_name ... ok [INFO] [stdout] test validators::single::complete::tests::test_validate ... ok [INFO] [stdout] test validators::single::consistent_seq_qual::tests::test_validate ... ok [INFO] [stdout] test fastq::record::tests::test_clear ... ok [INFO] [stdout] test validators::single::duplicate_name::tests::test_code ... ok [INFO] [stdout] test validators::single::duplicate_name::tests::test_is_empty ... ok [INFO] [stdout] test validators::single::name::tests::test_validate ... ok [INFO] [stdout] test validators::single::name::tests::test_code ... ok [INFO] [stdout] test validators::paired::names::tests::test_validate ... ok [INFO] [stdout] test fastq::writer::tests::test_write_record ... ok [INFO] [stdout] test validators::single::complete::tests::test_code ... ok [INFO] [stdout] test validators::paired::names::tests::test_level ... ok [INFO] [stdout] test validators::single::alphabet::tests::test_level ... ok [INFO] [stdout] test validators::single::alphabet::tests::test_name ... ok [INFO] [stdout] test validators::single::quality_string::tests::test_name ... ok [INFO] [stdout] test validators::single::alphabet::tests::test_new ... ok [INFO] [stdout] test validators::single::complete::tests::test_name ... ok [INFO] [stdout] test validators::single::plus_line::tests::test_validate ... ok [INFO] [stdout] test validators::single::plus_line::tests::test_level ... ok [INFO] [stdout] test validators::tests::test_filter_single_read_validators ... ok [INFO] [stdout] test validators::single::plus_line::tests::test_code ... ok [INFO] [stdout] test validators::tests::test_filter_single_read_validators_with_disabled_validators ... ok [INFO] [stdout] test validators::single::name::tests::test_level ... ok [INFO] [stdout] test validators::single::name::tests::test_name ... ok [INFO] [stdout] test validators::single::plus_line::tests::test_name ... ok [INFO] [stdout] test validators::single::duplicate_name::tests::test_level ... ok [INFO] [stdout] test validators::tests::test_filter_paired_read_validators ... ok [INFO] [stdout] test validators::tests::test_filter_paired_read_validators_with_disabled_validators ... ok [INFO] [stdout] test validators::single::quality_string::tests::test_validate ... ok [INFO] [stdout] test validators::single::quality_string::tests::test_level ... ok [INFO] [stdout] test validators::single::quality_string::tests::test_code ... ok [INFO] [stdout] test validators::tests::test_filter_validators ... ok [INFO] [stdout] test validators::single::duplicate_name::tests::test_name ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 49 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out [INFO] [stdout] [INFO] [stderr] Running /opt/rustwide/target/debug/deps/fq-f04e0cbb2e953ea6 [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out [INFO] [stdout] [INFO] [stderr] Doc-tests fqlib [INFO] [stdout] [INFO] [stdout] running 10 tests [INFO] [stdout] test src/validators/single/duplicate_name.rs - validators::single::duplicate_name::DuplicateNameValidator::insert (line 63) ... ok [INFO] [stdout] test src/generator.rs - generator::Generator::new (line 43) ... ok [INFO] [stdout] test src/fastq/record.rs - fastq::record::Record::reset (line 74) ... ok [INFO] [stdout] test src/generator.rs - generator::Generator::from_seed (line 55) ... ok [INFO] [stdout] test src/distributions/character.rs - distributions::character::Character (line 8) ... ok [INFO] [stdout] test src/validators/single/duplicate_name.rs - validators::single::duplicate_name::DuplicateNameValidator (line 22) ... ok [INFO] [stdout] test src/generator.rs - generator::Generator::from_rng (line 91) ... ok [INFO] [stdout] test src/generator.rs - generator::Generator::next_record_with_name (line 148) ... ok [INFO] [stdout] test src/validators/single/duplicate_name.rs - validators::single::duplicate_name::DuplicateNameValidator::is_empty (line 86) ... ok [INFO] [stdout] test src/generator.rs - generator::Generator::next_record (line 129) ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 10 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out [INFO] [stdout] [INFO] running `Command { std: "docker" "inspect" "af46f1818a3527f51fcc5b5b53493c2db40a590c2901e9324ca1ad9c31f9da65", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "af46f1818a3527f51fcc5b5b53493c2db40a590c2901e9324ca1ad9c31f9da65", kill_on_drop: false }` [INFO] [stdout] af46f1818a3527f51fcc5b5b53493c2db40a590c2901e9324ca1ad9c31f9da65