[INFO] cloning repository https://github.com/slazicoicr/bam_histogram_qc [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/slazicoicr/bam_histogram_qc" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fslazicoicr%2Fbam_histogram_qc", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fslazicoicr%2Fbam_histogram_qc'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] 76f1995e64ae232319aa05d407466f6ce0d927f0 [INFO] testing slazicoicr/bam_histogram_qc against beta-2020-07-24 for beta-1.46-1 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fslazicoicr%2Fbam_histogram_qc" "/workspace/builds/worker-4/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-4/source'... [INFO] [stderr] done. [INFO] validating manifest of git repo https://github.com/slazicoicr/bam_histogram_qc on toolchain beta-2020-07-24 [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+beta-2020-07-24" "read-manifest" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] started tweaking git repo https://github.com/slazicoicr/bam_histogram_qc [INFO] finished tweaking git repo https://github.com/slazicoicr/bam_histogram_qc [INFO] tweaked toml for git repo https://github.com/slazicoicr/bam_histogram_qc written to /workspace/builds/worker-4/source/Cargo.toml [INFO] crate git repo https://github.com/slazicoicr/bam_histogram_qc already has a lockfile, it will not be regenerated [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+beta-2020-07-24" "fetch" "--locked" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded lzma-sys v0.1.14 [INFO] [stderr] Downloaded fs-utils v1.1.1 [INFO] [stderr] Downloaded rust-htslib v0.23.0 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=0" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env@sha256:a636fd89d022f18117e1dc8fb37a0a009933cdbbe082814857f0e2024962d47c" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2020-07-24" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] [stdout] e3f237a32a46cecbb3bb44bd079a7336689f857a12617e8494d7b93b0b65c3c4 [INFO] running `Command { std: "docker" "start" "-a" "e3f237a32a46cecbb3bb44bd079a7336689f857a12617e8494d7b93b0b65c3c4", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "e3f237a32a46cecbb3bb44bd079a7336689f857a12617e8494d7b93b0b65c3c4", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "e3f237a32a46cecbb3bb44bd079a7336689f857a12617e8494d7b93b0b65c3c4", kill_on_drop: false }` [INFO] [stdout] e3f237a32a46cecbb3bb44bd079a7336689f857a12617e8494d7b93b0b65c3c4 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=0" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env@sha256:a636fd89d022f18117e1dc8fb37a0a009933cdbbe082814857f0e2024962d47c" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2020-07-24" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] e0412820ba7f2dc466c1bfb79d789443aef6dfe8dcb08d7c8d502c9e9e466ba6 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "e0412820ba7f2dc466c1bfb79d789443aef6dfe8dcb08d7c8d502c9e9e466ba6", kill_on_drop: false }` [INFO] [stderr] Compiling libc v0.2.55 [INFO] [stderr] Compiling bindgen v0.49.2 [INFO] [stderr] Compiling serde v1.0.91 [INFO] [stderr] Compiling syn v0.15.34 [INFO] [stderr] Compiling peeking_take_while v0.1.2 [INFO] [stderr] Compiling ieee754 v0.2.6 [INFO] [stderr] Compiling linear-map v1.2.0 [INFO] [stderr] Compiling custom_derive v0.1.7 [INFO] [stderr] Compiling backtrace-sys v0.1.28 [INFO] [stderr] Compiling backtrace v0.3.20 [INFO] [stderr] Compiling libloading v0.5.0 [INFO] [stderr] Compiling bzip2-sys v0.1.7 [INFO] [stderr] Compiling clang-sys v0.28.0 [INFO] [stderr] Compiling nom v4.2.3 [INFO] [stderr] Compiling libz-sys v1.0.25 [INFO] [stderr] Compiling lzma-sys v0.1.14 [INFO] [stderr] Compiling fs-utils v1.1.1 [INFO] [stderr] Compiling log v0.4.6 [INFO] [stderr] Compiling newtype_derive v0.1.6 [INFO] [stderr] Compiling quote v0.6.12 [INFO] [stderr] Compiling fxhash v0.2.1 [INFO] [stderr] Compiling atty v0.2.11 [INFO] [stderr] Compiling clap v2.33.0 [INFO] [stderr] Compiling env_logger v0.6.1 [INFO] [stderr] Compiling failure v0.1.5 [INFO] [stderr] Compiling cexpr v0.3.5 [INFO] [stderr] Compiling which v2.0.1 [INFO] [stderr] Compiling serde_derive v1.0.91 [INFO] [stderr] Compiling serde_json v1.0.39 [INFO] [stderr] Compiling bio-types v0.5.1 [INFO] [stderr] Compiling rust-htslib v0.23.0 [INFO] [stdout] error[E0277]: `htslib::htsFile__bindgen_ty_1` doesn't implement `std::fmt::Debug` [INFO] [stdout] --> /opt/rustwide/target/debug/build/rust-htslib-92300c62c0956873/out/bindings.rs:3:36720 [INFO] [stdout] | [INFO] [stdout] 3 | ...:: raw :: c_char , pub fp : htsFile__bindgen_ty_1 , pub format : htsFormat , } # [ repr ( C ) ] # [ derive ( Copy , Clone ) ] pub unio... [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ `htslib::htsFile__bindgen_ty_1` cannot be formatted using `{:?}` [INFO] [stdout] | [INFO] [stdout] = help: the trait `std::fmt::Debug` is not implemented for `htslib::htsFile__bindgen_ty_1` [INFO] [stdout] = note: add `#[derive(Debug)]` or manually implement `std::fmt::Debug` [INFO] [stdout] = note: required because of the requirements on the impl of `std::fmt::Debug` for `&htslib::htsFile__bindgen_ty_1` [INFO] [stdout] = note: required for the cast to the object type `dyn std::fmt::Debug` [INFO] [stdout] = note: this error originates in a derive macro (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error[E0277]: `htslib::hts_opt__bindgen_ty_1` doesn't implement `std::fmt::Debug` [INFO] [stdout] --> /opt/rustwide/target/debug/build/rust-htslib-92300c62c0956873/out/bindings.rs:3:46488 [INFO] [stdout] | [INFO] [stdout] 3 | ...: hts_fmt_option , pub val : hts_opt__bindgen_ty_1 , pub next : * mut hts_opt , } # [ repr ( C ) ] # [ derive ( Copy , Clone ) ] pub u... [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ `htslib::hts_opt__bindgen_ty_1` cannot be formatted using `{:?}` [INFO] [stdout] | [INFO] [stdout] = help: the trait `std::fmt::Debug` is not implemented for `htslib::hts_opt__bindgen_ty_1` [INFO] [stdout] = note: add `#[derive(Debug)]` or manually implement `std::fmt::Debug` [INFO] [stdout] = note: required because of the requirements on the impl of `std::fmt::Debug` for `&htslib::hts_opt__bindgen_ty_1` [INFO] [stdout] = note: required for the cast to the object type `dyn std::fmt::Debug` [INFO] [stdout] = note: this error originates in a derive macro (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error[E0277]: `htslib::__pthread_cond_s__bindgen_ty_1` doesn't implement `std::fmt::Debug` [INFO] [stdout] --> /opt/rustwide/target/debug/build/rust-htslib-92300c62c0956873/out/bindings.rs:3:100592 [INFO] [stdout] | [INFO] [stdout] 3 | ... { pub __bindgen_anon_1 : __pthread_cond_s__bindgen_ty_1 , pub __bindgen_anon_2 : __pthread_cond_s__bindgen_ty_2 , pub __g_refs : [ ::... [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ `htslib::__pthread_cond_s__bindgen_ty_1` cannot be formatted using `{:?}` [INFO] [stdout] | [INFO] [stdout] = help: the trait `std::fmt::Debug` is not implemented for `htslib::__pthread_cond_s__bindgen_ty_1` [INFO] [stdout] = note: add `#[derive(Debug)]` or manually implement `std::fmt::Debug` [INFO] [stdout] = note: required because of the requirements on the impl of `std::fmt::Debug` for `&htslib::__pthread_cond_s__bindgen_ty_1` [INFO] [stdout] = note: required for the cast to the object type `dyn std::fmt::Debug` [INFO] [stdout] = note: this error originates in a derive macro (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error[E0277]: `htslib::__pthread_cond_s__bindgen_ty_2` doesn't implement `std::fmt::Debug` [INFO] [stdout] --> /opt/rustwide/target/debug/build/rust-htslib-92300c62c0956873/out/bindings.rs:3:100648 [INFO] [stdout] | [INFO] [stdout] 3 | ... , pub __bindgen_anon_2 : __pthread_cond_s__bindgen_ty_2 , pub __g_refs : [ :: std :: os :: raw :: c_uint ; 2usize ] , pub __g_size : ... [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ `htslib::__pthread_cond_s__bindgen_ty_2` cannot be formatted using `{:?}` [INFO] [stdout] | [INFO] [stdout] = help: the trait `std::fmt::Debug` is not implemented for `htslib::__pthread_cond_s__bindgen_ty_2` [INFO] [stdout] = note: add `#[derive(Debug)]` or manually implement `std::fmt::Debug` [INFO] [stdout] = note: required because of the requirements on the impl of `std::fmt::Debug` for `&htslib::__pthread_cond_s__bindgen_ty_2` [INFO] [stdout] = note: required for the cast to the object type `dyn std::fmt::Debug` [INFO] [stdout] = note: this error originates in a derive macro (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error[E0277]: `htslib::__mbstate_t__bindgen_ty_1` doesn't implement `std::fmt::Debug` [INFO] [stdout] --> /opt/rustwide/target/debug/build/rust-htslib-92300c62c0956873/out/bindings.rs:3:144426 [INFO] [stdout] | [INFO] [stdout] 3 | ...w :: c_int , pub __value : __mbstate_t__bindgen_ty_1 , } # [ repr ( C ) ] # [ derive ( Copy , Clone ) ] pub union __mbstate_t__bindgen... [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ `htslib::__mbstate_t__bindgen_ty_1` cannot be formatted using `{:?}` [INFO] [stdout] | [INFO] [stdout] = help: the trait `std::fmt::Debug` is not implemented for `htslib::__mbstate_t__bindgen_ty_1` [INFO] [stdout] = note: add `#[derive(Debug)]` or manually implement `std::fmt::Debug` [INFO] [stdout] = note: required because of the requirements on the impl of `std::fmt::Debug` for `&htslib::__mbstate_t__bindgen_ty_1` [INFO] [stdout] = note: required for the cast to the object type `dyn std::fmt::Debug` [INFO] [stdout] = note: this error originates in a derive macro (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error[E0277]: `htslib::bcf_info_t__bindgen_ty_1` doesn't implement `std::fmt::Debug` [INFO] [stdout] --> /opt/rustwide/target/debug/build/rust-htslib-92300c62c0956873/out/bindings.rs:3:185001 [INFO] [stdout] | [INFO] [stdout] 3 | ... raw :: c_int , pub v1 : bcf_info_t__bindgen_ty_1 , pub vptr : * mut u8 , pub vptr_len : u32 , pub _bitfield_1 : __BindgenBitfieldUnit... [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ `htslib::bcf_info_t__bindgen_ty_1` cannot be formatted using `{:?}` [INFO] [stdout] | [INFO] [stdout] = help: the trait `std::fmt::Debug` is not implemented for `htslib::bcf_info_t__bindgen_ty_1` [INFO] [stdout] = note: add `#[derive(Debug)]` or manually implement `std::fmt::Debug` [INFO] [stdout] = note: required because of the requirements on the impl of `std::fmt::Debug` for `&htslib::bcf_info_t__bindgen_ty_1` [INFO] [stdout] = note: required for the cast to the object type `dyn std::fmt::Debug` [INFO] [stdout] = note: this error originates in a derive macro (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error[E0277]: `htslib::bam_pileup_cd` doesn't implement `std::fmt::Debug` [INFO] [stdout] --> /opt/rustwide/target/debug/build/rust-htslib-92300c62c0956873/out/bindings.rs:3:227170 [INFO] [stdout] | [INFO] [stdout] 3 | ... [ u8 ; 4usize ] , u32 > , pub cd : bam_pileup_cd , } # [ test ] fn bindgen_test_layout_bam_pileup1_t ( ) { assert_eq ! ( :: std :: me... [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^ `htslib::bam_pileup_cd` cannot be formatted using `{:?}` [INFO] [stdout] | [INFO] [stdout] = help: the trait `std::fmt::Debug` is not implemented for `htslib::bam_pileup_cd` [INFO] [stdout] = note: add `#[derive(Debug)]` or manually implement `std::fmt::Debug` [INFO] [stdout] = note: required because of the requirements on the impl of `std::fmt::Debug` for `&htslib::bam_pileup_cd` [INFO] [stdout] = note: required for the cast to the object type `dyn std::fmt::Debug` [INFO] [stdout] = note: this error originates in a derive macro (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error: aborting due to 7 previous errors [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] For more information about this error, try `rustc --explain E0277`. [INFO] [stdout] [INFO] [stderr] error: could not compile `rust-htslib`. [INFO] [stderr] [INFO] [stderr] To learn more, run the command again with --verbose. [INFO] running `Command { std: "docker" "inspect" "e0412820ba7f2dc466c1bfb79d789443aef6dfe8dcb08d7c8d502c9e9e466ba6", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "e0412820ba7f2dc466c1bfb79d789443aef6dfe8dcb08d7c8d502c9e9e466ba6", kill_on_drop: false }` [INFO] [stdout] e0412820ba7f2dc466c1bfb79d789443aef6dfe8dcb08d7c8d502c9e9e466ba6