[INFO] updating cached repository https://github.com/mttmartin/anneal_predictor [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "-c" "remote.origin.fetch=refs/heads/*:refs/heads/*" "fetch" "origin" "--force" "--prune", kill_on_drop: false }` [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] 8015bc6eaafedea32d296c1982070e2073c44112 [INFO] testing mttmartin/anneal_predictor against beta-2020-07-24 for beta-1.46-1 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fmttmartin%2Fanneal_predictor" "/workspace/builds/worker-11/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-11/source'... [INFO] [stderr] done. [INFO] validating manifest of git repo https://github.com/mttmartin/anneal_predictor on toolchain beta-2020-07-24 [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+beta-2020-07-24" "read-manifest" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] started tweaking git repo https://github.com/mttmartin/anneal_predictor [INFO] finished tweaking git repo https://github.com/mttmartin/anneal_predictor [INFO] tweaked toml for git repo https://github.com/mttmartin/anneal_predictor written to /workspace/builds/worker-11/source/Cargo.toml [INFO] crate git repo https://github.com/mttmartin/anneal_predictor already has a lockfile, it will not be regenerated [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+beta-2020-07-24" "fetch" "--locked" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-11/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-11/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=0" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env@sha256:a636fd89d022f18117e1dc8fb37a0a009933cdbbe082814857f0e2024962d47c" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2020-07-24" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] [stdout] 9783a45dd5798bcdf692902d8fdbd1b18d5e85a3a028e7fa40261f329cf5e229 [INFO] running `Command { std: "docker" "start" "-a" "9783a45dd5798bcdf692902d8fdbd1b18d5e85a3a028e7fa40261f329cf5e229", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "9783a45dd5798bcdf692902d8fdbd1b18d5e85a3a028e7fa40261f329cf5e229", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "9783a45dd5798bcdf692902d8fdbd1b18d5e85a3a028e7fa40261f329cf5e229", kill_on_drop: false }` [INFO] [stdout] 9783a45dd5798bcdf692902d8fdbd1b18d5e85a3a028e7fa40261f329cf5e229 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-11/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-11/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=0" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env@sha256:a636fd89d022f18117e1dc8fb37a0a009933cdbbe082814857f0e2024962d47c" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2020-07-24" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 476c1da6729b524857939bbba0c93b0017acaf78a70139d9a4d8fe051dee493b [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "476c1da6729b524857939bbba0c93b0017acaf78a70139d9a4d8fe051dee493b", kill_on_drop: false }` [INFO] [stderr] Compiling anneal_predictor v0.1.0 (/opt/rustwide/workdir) [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/main.rs:306:7 [INFO] [stdout] | [INFO] [stdout] 306 | let mut dinucleotide_deltaG = self.deltaG_dinucleotide(template_dinucleotide.clone(), oligo_dinucleotide.clone()); [INFO] [stdout] | ----^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_mut)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: method `deltaG_dinucleotide` should have a snake case name [INFO] [stdout] --> src/main.rs:8:5 [INFO] [stdout] | [INFO] [stdout] 8 | fn deltaG_dinucleotide(&self, substr1_initial: String, substr2_initial: String) -> f64 { [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^ help: convert the identifier to snake case: `delta_g_dinucleotide` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(non_snake_case)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `deltaS` should have a snake case name [INFO] [stdout] --> src/main.rs:9:11 [INFO] [stdout] | [INFO] [stdout] 9 | let mut deltaS = 0.0; [INFO] [stdout] | ^^^^^^ help: convert the identifier to snake case: `delta_s` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `deltaH` should have a snake case name [INFO] [stdout] --> src/main.rs:10:11 [INFO] [stdout] | [INFO] [stdout] 10 | let mut deltaH = 0.0; [INFO] [stdout] | ^^^^^^ help: convert the identifier to snake case: `delta_h` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `deltaG` should have a snake case name [INFO] [stdout] --> src/main.rs:278:7 [INFO] [stdout] | [INFO] [stdout] 278 | let deltaG = deltaH - self.temperature * deltaS; [INFO] [stdout] | ^^^^^^ help: convert the identifier to snake case: `delta_g` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: method `initiation_termination_deltaG` should have a snake case name [INFO] [stdout] --> src/main.rs:282:4 [INFO] [stdout] | [INFO] [stdout] 282 | fn initiation_termination_deltaG(&self, template_nucleotide: String, oligo_nucleotide: String) -> f64 { [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ help: convert the identifier to snake case: `initiation_termination_delta_g` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `deltaH` should have a snake case name [INFO] [stdout] --> src/main.rs:284:7 [INFO] [stdout] | [INFO] [stdout] 284 | let deltaH = 9.62; [INFO] [stdout] | ^^^^^^ help: convert the identifier to snake case: `delta_h` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `deltaS` should have a snake case name [INFO] [stdout] --> src/main.rs:285:7 [INFO] [stdout] | [INFO] [stdout] 285 | let deltaS = 17.15/1000.0; [INFO] [stdout] | ^^^^^^ help: convert the identifier to snake case: `delta_s` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `deltaGinit` should have a snake case name [INFO] [stdout] --> src/main.rs:286:7 [INFO] [stdout] | [INFO] [stdout] 286 | let deltaGinit = deltaH - (self.temperature*deltaS); [INFO] [stdout] | ^^^^^^^^^^ help: convert the identifier to snake case: `delta_ginit` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `deltaH` should have a snake case name [INFO] [stdout] --> src/main.rs:289:7 [INFO] [stdout] | [INFO] [stdout] 289 | let deltaH = 0.4184; [INFO] [stdout] | ^^^^^^ help: convert the identifier to snake case: `delta_h` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `deltaS` should have a snake case name [INFO] [stdout] --> src/main.rs:290:7 [INFO] [stdout] | [INFO] [stdout] 290 | let deltaS = -11.72/1000.0; [INFO] [stdout] | ^^^^^^ help: convert the identifier to snake case: `delta_s` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `deltaGinit` should have a snake case name [INFO] [stdout] --> src/main.rs:291:7 [INFO] [stdout] | [INFO] [stdout] 291 | let deltaGinit = deltaH - (self.temperature*deltaS); [INFO] [stdout] | ^^^^^^^^^^ help: convert the identifier to snake case: `delta_ginit` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: method `calc_deltaG` should have a snake case name [INFO] [stdout] --> src/main.rs:299:4 [INFO] [stdout] | [INFO] [stdout] 299 | fn calc_deltaG(&self, template_piece: String) -> f64{ [INFO] [stdout] | ^^^^^^^^^^^ help: convert the identifier to snake case: `calc_delta_g` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `deltaG` should have a snake case name [INFO] [stdout] --> src/main.rs:300:10 [INFO] [stdout] | [INFO] [stdout] 300 | let mut deltaG = 0.0; [INFO] [stdout] | ^^^^^^ help: convert the identifier to snake case: `delta_g` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `initiation_deltaG` should have a snake case name [INFO] [stdout] --> src/main.rs:303:11 [INFO] [stdout] | [INFO] [stdout] 303 | let mut initiation_deltaG = 0.0; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^ help: convert the identifier to snake case: `initiation_delta_g` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `dinucleotide_deltaG` should have a snake case name [INFO] [stdout] --> src/main.rs:306:11 [INFO] [stdout] | [INFO] [stdout] 306 | let mut dinucleotide_deltaG = self.deltaG_dinucleotide(template_dinucleotide.clone(), oligo_dinucleotide.clone()); [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^ help: convert the identifier to snake case: `dinucleotide_delta_g` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: method `lowest_deltaG` should have a snake case name [INFO] [stdout] --> src/main.rs:320:5 [INFO] [stdout] | [INFO] [stdout] 320 | fn lowest_deltaG(&self) -> f64 { [INFO] [stdout] | ^^^^^^^^^^^^^ help: convert the identifier to snake case: `lowest_delta_g` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `lowestDeltaG` should have a snake case name [INFO] [stdout] --> src/main.rs:321:11 [INFO] [stdout] | [INFO] [stdout] 321 | let mut lowestDeltaG = 0.0; [INFO] [stdout] | ^^^^^^^^^^^^ help: convert the identifier to snake case: `lowest_delta_g` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `currentDeltaG` should have a snake case name [INFO] [stdout] --> src/main.rs:324:8 [INFO] [stdout] | [INFO] [stdout] 324 | let currentDeltaG = self.calc_deltaG(template_piece); [INFO] [stdout] | ^^^^^^^^^^^^^ help: convert the identifier to snake case: `current_delta_g` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `lowest_delta_G` should have a snake case name [INFO] [stdout] --> src/main.rs:339:6 [INFO] [stdout] | [INFO] [stdout] 339 | let lowest_delta_G = simulation.lowest_deltaG(); [INFO] [stdout] | ^^^^^^^^^^^^^^ help: convert the identifier to snake case: `lowest_delta_g` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 20 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 1.37s [INFO] running `Command { std: "docker" "inspect" "476c1da6729b524857939bbba0c93b0017acaf78a70139d9a4d8fe051dee493b", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "476c1da6729b524857939bbba0c93b0017acaf78a70139d9a4d8fe051dee493b", kill_on_drop: false }` [INFO] [stdout] 476c1da6729b524857939bbba0c93b0017acaf78a70139d9a4d8fe051dee493b [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-11/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-11/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=0" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env@sha256:a636fd89d022f18117e1dc8fb37a0a009933cdbbe082814857f0e2024962d47c" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2020-07-24" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] b339806e7aad130bce5bc918481f785f052ec6ef2ef7b3d200eb26803defda3f [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "b339806e7aad130bce5bc918481f785f052ec6ef2ef7b3d200eb26803defda3f", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Compiling anneal_predictor v0.1.0 (/opt/rustwide/workdir) [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/main.rs:306:7 [INFO] [stdout] | [INFO] [stdout] 306 | let mut dinucleotide_deltaG = self.deltaG_dinucleotide(template_dinucleotide.clone(), oligo_dinucleotide.clone()); [INFO] [stdout] | ----^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_mut)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: method `deltaG_dinucleotide` should have a snake case name [INFO] [stdout] --> src/main.rs:8:5 [INFO] [stdout] | [INFO] [stdout] 8 | fn deltaG_dinucleotide(&self, substr1_initial: String, substr2_initial: String) -> f64 { [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^ help: convert the identifier to snake case: `delta_g_dinucleotide` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(non_snake_case)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `deltaS` should have a snake case name [INFO] [stdout] --> src/main.rs:9:11 [INFO] [stdout] | [INFO] [stdout] 9 | let mut deltaS = 0.0; [INFO] [stdout] | ^^^^^^ help: convert the identifier to snake case: `delta_s` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `deltaH` should have a snake case name [INFO] [stdout] --> src/main.rs:10:11 [INFO] [stdout] | [INFO] [stdout] 10 | let mut deltaH = 0.0; [INFO] [stdout] | ^^^^^^ help: convert the identifier to snake case: `delta_h` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `deltaG` should have a snake case name [INFO] [stdout] --> src/main.rs:278:7 [INFO] [stdout] | [INFO] [stdout] 278 | let deltaG = deltaH - self.temperature * deltaS; [INFO] [stdout] | ^^^^^^ help: convert the identifier to snake case: `delta_g` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: method `initiation_termination_deltaG` should have a snake case name [INFO] [stdout] --> src/main.rs:282:4 [INFO] [stdout] | [INFO] [stdout] 282 | fn initiation_termination_deltaG(&self, template_nucleotide: String, oligo_nucleotide: String) -> f64 { [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ help: convert the identifier to snake case: `initiation_termination_delta_g` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `deltaH` should have a snake case name [INFO] [stdout] --> src/main.rs:284:7 [INFO] [stdout] | [INFO] [stdout] 284 | let deltaH = 9.62; [INFO] [stdout] | ^^^^^^ help: convert the identifier to snake case: `delta_h` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `deltaS` should have a snake case name [INFO] [stdout] --> src/main.rs:285:7 [INFO] [stdout] | [INFO] [stdout] 285 | let deltaS = 17.15/1000.0; [INFO] [stdout] | ^^^^^^ help: convert the identifier to snake case: `delta_s` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `deltaGinit` should have a snake case name [INFO] [stdout] --> src/main.rs:286:7 [INFO] [stdout] | [INFO] [stdout] 286 | let deltaGinit = deltaH - (self.temperature*deltaS); [INFO] [stdout] | ^^^^^^^^^^ help: convert the identifier to snake case: `delta_ginit` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `deltaH` should have a snake case name [INFO] [stdout] --> src/main.rs:289:7 [INFO] [stdout] | [INFO] [stdout] 289 | let deltaH = 0.4184; [INFO] [stdout] | ^^^^^^ help: convert the identifier to snake case: `delta_h` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `deltaS` should have a snake case name [INFO] [stdout] --> src/main.rs:290:7 [INFO] [stdout] | [INFO] [stdout] 290 | let deltaS = -11.72/1000.0; [INFO] [stdout] | ^^^^^^ help: convert the identifier to snake case: `delta_s` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `deltaGinit` should have a snake case name [INFO] [stdout] --> src/main.rs:291:7 [INFO] [stdout] | [INFO] [stdout] 291 | let deltaGinit = deltaH - (self.temperature*deltaS); [INFO] [stdout] | ^^^^^^^^^^ help: convert the identifier to snake case: `delta_ginit` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: method `calc_deltaG` should have a snake case name [INFO] [stdout] --> src/main.rs:299:4 [INFO] [stdout] | [INFO] [stdout] 299 | fn calc_deltaG(&self, template_piece: String) -> f64{ [INFO] [stdout] | ^^^^^^^^^^^ help: convert the identifier to snake case: `calc_delta_g` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `deltaG` should have a snake case name [INFO] [stdout] --> src/main.rs:300:10 [INFO] [stdout] | [INFO] [stdout] 300 | let mut deltaG = 0.0; [INFO] [stdout] | ^^^^^^ help: convert the identifier to snake case: `delta_g` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `initiation_deltaG` should have a snake case name [INFO] [stdout] --> src/main.rs:303:11 [INFO] [stdout] | [INFO] [stdout] 303 | let mut initiation_deltaG = 0.0; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^ help: convert the identifier to snake case: `initiation_delta_g` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `dinucleotide_deltaG` should have a snake case name [INFO] [stdout] --> src/main.rs:306:11 [INFO] [stdout] | [INFO] [stdout] 306 | let mut dinucleotide_deltaG = self.deltaG_dinucleotide(template_dinucleotide.clone(), oligo_dinucleotide.clone()); [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^ help: convert the identifier to snake case: `dinucleotide_delta_g` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: method `lowest_deltaG` should have a snake case name [INFO] [stdout] --> src/main.rs:320:5 [INFO] [stdout] | [INFO] [stdout] 320 | fn lowest_deltaG(&self) -> f64 { [INFO] [stdout] | ^^^^^^^^^^^^^ help: convert the identifier to snake case: `lowest_delta_g` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `lowestDeltaG` should have a snake case name [INFO] [stdout] --> src/main.rs:321:11 [INFO] [stdout] | [INFO] [stdout] 321 | let mut lowestDeltaG = 0.0; [INFO] [stdout] | ^^^^^^^^^^^^ help: convert the identifier to snake case: `lowest_delta_g` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `currentDeltaG` should have a snake case name [INFO] [stdout] --> src/main.rs:324:8 [INFO] [stdout] | [INFO] [stdout] 324 | let currentDeltaG = self.calc_deltaG(template_piece); [INFO] [stdout] | ^^^^^^^^^^^^^ help: convert the identifier to snake case: `current_delta_g` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `lowest_delta_G` should have a snake case name [INFO] [stdout] --> src/main.rs:339:6 [INFO] [stdout] | [INFO] [stdout] 339 | let lowest_delta_G = simulation.lowest_deltaG(); [INFO] [stdout] | ^^^^^^^^^^^^^^ help: convert the identifier to snake case: `lowest_delta_g` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `lowest_delta_G` should have a snake case name [INFO] [stdout] --> src/main.rs:354:7 [INFO] [stdout] | [INFO] [stdout] 354 | let lowest_delta_G = simulation.lowest_deltaG(); [INFO] [stdout] | ^^^^^^^^^^^^^^ help: convert the identifier to snake case: `lowest_delta_g` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 21 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 1.69s [INFO] running `Command { std: "docker" "inspect" "b339806e7aad130bce5bc918481f785f052ec6ef2ef7b3d200eb26803defda3f", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "b339806e7aad130bce5bc918481f785f052ec6ef2ef7b3d200eb26803defda3f", kill_on_drop: false }` [INFO] [stdout] b339806e7aad130bce5bc918481f785f052ec6ef2ef7b3d200eb26803defda3f [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-11/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-11/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=0" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env@sha256:a636fd89d022f18117e1dc8fb37a0a009933cdbbe082814857f0e2024962d47c" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2020-07-24" "test" "--frozen", kill_on_drop: false }` [INFO] [stdout] 4e1531650dda5ad6f6a776fd2b622dfca5c41529bae39f2f6c70351700dc735f [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "4e1531650dda5ad6f6a776fd2b622dfca5c41529bae39f2f6c70351700dc735f", kill_on_drop: false }` [INFO] [stderr] warning: variable does not need to be mutable [INFO] [stderr] --> src/main.rs:306:7 [INFO] [stderr] | [INFO] [stderr] 306 | let mut dinucleotide_deltaG = self.deltaG_dinucleotide(template_dinucleotide.clone(), oligo_dinucleotide.clone()); [INFO] [stderr] | ----^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] | | [INFO] [stderr] | help: remove this `mut` [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(unused_mut)]` on by default [INFO] [stderr] [INFO] [stderr] warning: method `deltaG_dinucleotide` should have a snake case name [INFO] [stderr] --> src/main.rs:8:5 [INFO] [stderr] | [INFO] [stderr] 8 | fn deltaG_dinucleotide(&self, substr1_initial: String, substr2_initial: String) -> f64 { [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^ help: convert the identifier to snake case: `delta_g_dinucleotide` [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(non_snake_case)]` on by default [INFO] [stderr] [INFO] [stderr] warning: variable `deltaS` should have a snake case name [INFO] [stderr] --> src/main.rs:9:11 [INFO] [stderr] | [INFO] [stderr] 9 | let mut deltaS = 0.0; [INFO] [stderr] | ^^^^^^ help: convert the identifier to snake case: `delta_s` [INFO] [stderr] [INFO] [stderr] warning: variable `deltaH` should have a snake case name [INFO] [stderr] --> src/main.rs:10:11 [INFO] [stderr] | [INFO] [stderr] 10 | let mut deltaH = 0.0; [INFO] [stderr] | ^^^^^^ help: convert the identifier to snake case: `delta_h` [INFO] [stderr] [INFO] [stderr] warning: variable `deltaG` should have a snake case name [INFO] [stderr] --> src/main.rs:278:7 [INFO] [stderr] | [INFO] [stderr] 278 | let deltaG = deltaH - self.temperature * deltaS; [INFO] [stderr] | ^^^^^^ help: convert the identifier to snake case: `delta_g` [INFO] [stderr] [INFO] [stderr] warning: method `initiation_termination_deltaG` should have a snake case name [INFO] [stderr] --> src/main.rs:282:4 [INFO] [stderr] | [INFO] [stderr] 282 | fn initiation_termination_deltaG(&self, template_nucleotide: String, oligo_nucleotide: String) -> f64 { [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ help: convert the identifier to snake case: `initiation_termination_delta_g` [INFO] [stderr] [INFO] [stderr] warning: variable `deltaH` should have a snake case name [INFO] [stderr] --> src/main.rs:284:7 [INFO] [stderr] | [INFO] [stderr] 284 | let deltaH = 9.62; [INFO] [stderr] | ^^^^^^ help: convert the identifier to snake case: `delta_h` [INFO] [stderr] [INFO] [stderr] warning: variable `deltaS` should have a snake case name [INFO] [stderr] --> src/main.rs:285:7 [INFO] [stderr] | [INFO] [stderr] 285 | let deltaS = 17.15/1000.0; [INFO] [stderr] | ^^^^^^ help: convert the identifier to snake case: `delta_s` [INFO] [stderr] [INFO] [stderr] warning: variable `deltaGinit` should have a snake case name [INFO] [stderr] --> src/main.rs:286:7 [INFO] [stderr] | [INFO] [stderr] 286 | let deltaGinit = deltaH - (self.temperature*deltaS); [INFO] [stderr] | ^^^^^^^^^^ help: convert the identifier to snake case: `delta_ginit` [INFO] [stderr] [INFO] [stderr] warning: variable `deltaH` should have a snake case name [INFO] [stderr] --> src/main.rs:289:7 [INFO] [stderr] | [INFO] [stderr] 289 | let deltaH = 0.4184; [INFO] [stderr] | ^^^^^^ help: convert the identifier to snake case: `delta_h` [INFO] [stderr] [INFO] [stderr] warning: variable `deltaS` should have a snake case name [INFO] [stderr] --> src/main.rs:290:7 [INFO] [stderr] | [INFO] [stderr] 290 | let deltaS = -11.72/1000.0; [INFO] [stderr] | ^^^^^^ help: convert the identifier to snake case: `delta_s` [INFO] [stderr] [INFO] [stderr] warning: variable `deltaGinit` should have a snake case name [INFO] [stderr] --> src/main.rs:291:7 [INFO] [stderr] | [INFO] [stderr] 291 | let deltaGinit = deltaH - (self.temperature*deltaS); [INFO] [stderr] | ^^^^^^^^^^ help: convert the identifier to snake case: `delta_ginit` [INFO] [stderr] [INFO] [stderr] warning: method `calc_deltaG` should have a snake case name [INFO] [stderr] --> src/main.rs:299:4 [INFO] [stderr] | [INFO] [stderr] 299 | fn calc_deltaG(&self, template_piece: String) -> f64{ [INFO] [stderr] | ^^^^^^^^^^^ help: convert the identifier to snake case: `calc_delta_g` [INFO] [stderr] [INFO] [stderr] warning: variable `deltaG` should have a snake case name [INFO] [stderr] --> src/main.rs:300:10 [INFO] [stderr] | [INFO] [stderr] 300 | let mut deltaG = 0.0; [INFO] [stderr] | ^^^^^^ help: convert the identifier to snake case: `delta_g` [INFO] [stderr] [INFO] [stderr] warning: variable `initiation_deltaG` should have a snake case name [INFO] [stderr] --> src/main.rs:303:11 [INFO] [stderr] | [INFO] [stderr] 303 | let mut initiation_deltaG = 0.0; [INFO] [stderr] | ^^^^^^^^^^^^^^^^^ help: convert the identifier to snake case: `initiation_delta_g` [INFO] [stderr] [INFO] [stderr] warning: variable `dinucleotide_deltaG` should have a snake case name [INFO] [stderr] --> src/main.rs:306:11 [INFO] [stderr] | [INFO] [stderr] 306 | let mut dinucleotide_deltaG = self.deltaG_dinucleotide(template_dinucleotide.clone(), oligo_dinucleotide.clone()); [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^ help: convert the identifier to snake case: `dinucleotide_delta_g` [INFO] [stderr] [INFO] [stderr] warning: method `lowest_deltaG` should have a snake case name [INFO] [stderr] --> src/main.rs:320:5 [INFO] [stderr] | [INFO] [stderr] 320 | fn lowest_deltaG(&self) -> f64 { [INFO] [stderr] | ^^^^^^^^^^^^^ help: convert the identifier to snake case: `lowest_delta_g` [INFO] [stderr] [INFO] [stderr] warning: variable `lowestDeltaG` should have a snake case name [INFO] [stderr] --> src/main.rs:321:11 [INFO] [stderr] | [INFO] [stderr] 321 | let mut lowestDeltaG = 0.0; [INFO] [stderr] | ^^^^^^^^^^^^ help: convert the identifier to snake case: `lowest_delta_g` [INFO] [stderr] [INFO] [stderr] warning: variable `currentDeltaG` should have a snake case name [INFO] [stderr] --> src/main.rs:324:8 [INFO] [stderr] | [INFO] [stderr] 324 | let currentDeltaG = self.calc_deltaG(template_piece); [INFO] [stderr] | ^^^^^^^^^^^^^ help: convert the identifier to snake case: `current_delta_g` [INFO] [stderr] [INFO] [stderr] warning: variable `lowest_delta_G` should have a snake case name [INFO] [stderr] --> src/main.rs:339:6 [INFO] [stderr] | [INFO] [stderr] 339 | let lowest_delta_G = simulation.lowest_deltaG(); [INFO] [stderr] | ^^^^^^^^^^^^^^ help: convert the identifier to snake case: `lowest_delta_g` [INFO] [stderr] [INFO] [stderr] warning: variable `lowest_delta_G` should have a snake case name [INFO] [stderr] --> src/main.rs:354:7 [INFO] [stderr] | [INFO] [stderr] 354 | let lowest_delta_G = simulation.lowest_deltaG(); [INFO] [stderr] | ^^^^^^^^^^^^^^ help: convert the identifier to snake case: `lowest_delta_g` [INFO] [stderr] [INFO] [stderr] warning: 21 warnings emitted [INFO] [stderr] [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 0.02s [INFO] [stdout] [INFO] [stderr] Running /opt/rustwide/target/debug/deps/anneal_predictor-95cde813698f1b4c [INFO] [stdout] running 1 test [INFO] [stderr] error: test failed, to rerun pass '--bin anneal_predictor' [INFO] [stdout] test tests::known_example ... FAILED [INFO] [stdout] [INFO] [stdout] failures: [INFO] [stdout] [INFO] [stdout] ---- tests::known_example stdout ---- [INFO] [stdout] template piece: "CGTTGA" [INFO] [stdout] thread 'tests::known_example' panicked at 'assertion failed: lowest_delta_G <= acceptable_range.start && [INFO] [stdout] lowest_delta_G > acceptable_range.end', src/main.rs:356:9 [INFO] [stdout] stack backtrace: [INFO] [stdout] 0: 0x5607e586a995 - backtrace::backtrace::libunwind::trace::h5e2646fa3eddf2ea [INFO] [stdout] at /cargo/registry/src/github.com-1ecc6299db9ec823/backtrace-0.3.46/src/backtrace/libunwind.rs:86 [INFO] [stdout] 1: 0x5607e586a995 - backtrace::backtrace::trace_unsynchronized::hb95dd7f77ce47877 [INFO] [stdout] at /cargo/registry/src/github.com-1ecc6299db9ec823/backtrace-0.3.46/src/backtrace/mod.rs:66 [INFO] [stdout] 2: 0x5607e586a995 - std::sys_common::backtrace::_print_fmt::h5e71b67af43fd70d [INFO] [stdout] at src/libstd/sys_common/backtrace.rs:78 [INFO] [stdout] 3: 0x5607e586a995 - ::fmt::hdb4a83d2b61107e5 [INFO] [stdout] at src/libstd/sys_common/backtrace.rs:59 [INFO] [stdout] 4: 0x5607e58925fc - core::fmt::write::ha20e7262fa3e8a7a [INFO] [stdout] at src/libcore/fmt/mod.rs:1076 [INFO] [stdout] 5: 0x5607e581f505 - std::io::Write::write_fmt::hd8ff364c7845d2d0 [INFO] [stdout] at /rustc/6f959902b3103c49ca981fbc01871589c3498489/src/libstd/io/mod.rs:1537 [INFO] [stdout] 6: 0x5607e5865061 - std::io::impls::>::write_fmt::h1c057ef6e8762996 [INFO] [stdout] at src/libstd/io/impls.rs:176 [INFO] [stdout] 7: 0x5607e586d0f0 - std::sys_common::backtrace::_print::h9c07314cc66ba539 [INFO] [stdout] at src/libstd/sys_common/backtrace.rs:62 [INFO] [stdout] 8: 0x5607e586d0f0 - std::sys_common::backtrace::print::hd1fd65f49a2d8544 [INFO] [stdout] at src/libstd/sys_common/backtrace.rs:49 [INFO] [stdout] 9: 0x5607e586d0f0 - std::panicking::default_hook::{{closure}}::h222da46485ab36fc [INFO] [stdout] at src/libstd/panicking.rs:198 [INFO] [stdout] 10: 0x5607e586cdea - std::panicking::default_hook::hc5868949d129ed00 [INFO] [stdout] at src/libstd/panicking.rs:214 [INFO] [stdout] 11: 0x5607e586d733 - std::panicking::rust_panic_with_hook::h26a6ab8b0993c0c8 [INFO] [stdout] at src/libstd/panicking.rs:526 [INFO] [stdout] 12: 0x5607e581a1e5 - std::panicking::begin_panic::hfbc379b84afb7e7c [INFO] [stdout] at /rustc/6f959902b3103c49ca981fbc01871589c3498489/src/libstd/panicking.rs:456 [INFO] [stdout] 13: 0x5607e581d6c2 - anneal_predictor::tests::known_example::hb5a9656dbab32de0 [INFO] [stdout] at src/main.rs:356 [INFO] [stdout] 14: 0x5607e581d51a - anneal_predictor::tests::known_example::{{closure}}::h81d2a783709fd406 [INFO] [stdout] at src/main.rs:349 [INFO] [stdout] 15: 0x5607e581d12e - core::ops::function::FnOnce::call_once::hb949226b8d5d6e25 [INFO] [stdout] at /rustc/6f959902b3103c49ca981fbc01871589c3498489/src/libcore/ops/function.rs:233 [INFO] [stdout] 16: 0x5607e5846a7c - as core::ops::function::FnOnce>::call_once::h42148c33ed88c979 [INFO] [stdout] at /rustc/6f959902b3103c49ca981fbc01871589c3498489/src/liballoc/boxed.rs:1081 [INFO] [stdout] 17: 0x5607e5846a7c - as core::ops::function::FnOnce<()>>::call_once::h759dc0b09d774665 [INFO] [stdout] at /rustc/6f959902b3103c49ca981fbc01871589c3498489/src/libstd/panic.rs:318 [INFO] [stdout] 18: 0x5607e5846a7c - std::panicking::try::do_call::h676ad1fc9e9badea [INFO] [stdout] at /rustc/6f959902b3103c49ca981fbc01871589c3498489/src/libstd/panicking.rs:348 [INFO] [stdout] 19: 0x5607e5846a7c - std::panicking::try::hee36a8727a3050b0 [INFO] [stdout] at /rustc/6f959902b3103c49ca981fbc01871589c3498489/src/libstd/panicking.rs:325 [INFO] [stdout] 20: 0x5607e5846a7c - std::panic::catch_unwind::hd5d426ebd89b2542 [INFO] [stdout] at /rustc/6f959902b3103c49ca981fbc01871589c3498489/src/libstd/panic.rs:394 [INFO] [stdout] 21: 0x5607e5846a7c - test::run_test_in_process::h8dacdba4dc4cbaa5 [INFO] [stdout] at src/libtest/lib.rs:541 [INFO] [stdout] 22: 0x5607e5846a7c - test::run_test::run_test_inner::{{closure}}::hf93754afad6be40f [INFO] [stdout] at src/libtest/lib.rs:450 [INFO] [stdout] 23: 0x5607e581e9f6 - std::sys_common::backtrace::__rust_begin_short_backtrace::h2c69fab544a90730 [INFO] [stdout] at /rustc/6f959902b3103c49ca981fbc01871589c3498489/src/libstd/sys_common/backtrace.rs:130 [INFO] [stdout] 24: 0x5607e5823a85 - std::thread::Builder::spawn_unchecked::{{closure}}::{{closure}}::hcf302fafa60d80f2 [INFO] [stdout] at /rustc/6f959902b3103c49ca981fbc01871589c3498489/src/libstd/thread/mod.rs:475 [INFO] [stdout] 25: 0x5607e5823a85 - as core::ops::function::FnOnce<()>>::call_once::h39ede710608e817e [INFO] [stdout] at /rustc/6f959902b3103c49ca981fbc01871589c3498489/src/libstd/panic.rs:318 [INFO] [stdout] 26: 0x5607e5823a85 - std::panicking::try::do_call::hec0b4d2faa46fbf7 [INFO] [stdout] at /rustc/6f959902b3103c49ca981fbc01871589c3498489/src/libstd/panicking.rs:348 [INFO] [stdout] 27: 0x5607e5823a85 - std::panicking::try::h0144ba3f2539803d [INFO] [stdout] at /rustc/6f959902b3103c49ca981fbc01871589c3498489/src/libstd/panicking.rs:325 [INFO] [stdout] 28: 0x5607e5823a85 - std::panic::catch_unwind::ha03e59eb589f857b [INFO] [stdout] at /rustc/6f959902b3103c49ca981fbc01871589c3498489/src/libstd/panic.rs:394 [INFO] [stdout] 29: 0x5607e5823a85 - std::thread::Builder::spawn_unchecked::{{closure}}::hdeba34620a4a7a44 [INFO] [stdout] at /rustc/6f959902b3103c49ca981fbc01871589c3498489/src/libstd/thread/mod.rs:474 [INFO] [stdout] 30: 0x5607e5823a85 - core::ops::function::FnOnce::call_once{{vtable.shim}}::h552693dbb801eadd [INFO] [stdout] at /rustc/6f959902b3103c49ca981fbc01871589c3498489/src/libcore/ops/function.rs:233 [INFO] [stdout] 31: 0x5607e58738fa - as core::ops::function::FnOnce>::call_once::h61c24496ae624ac5 [INFO] [stdout] at /rustc/6f959902b3103c49ca981fbc01871589c3498489/src/liballoc/boxed.rs:1081 [INFO] [stdout] 32: 0x5607e58738fa - as core::ops::function::FnOnce>::call_once::h89548957afa14049 [INFO] [stdout] at /rustc/6f959902b3103c49ca981fbc01871589c3498489/src/liballoc/boxed.rs:1081 [INFO] [stdout] 33: 0x5607e58738fa - std::sys::unix::thread::Thread::new::thread_start::h73903fbbff5b990e [INFO] [stdout] at src/libstd/sys/unix/thread.rs:87 [INFO] [stdout] 34: 0x7fe447323609 - start_thread [INFO] [stdout] 35: 0x7fe44722f103 - __clone [INFO] [stdout] 36: 0x0 - [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] failures: [INFO] [stdout] tests::known_example [INFO] [stdout] [INFO] [stdout] test result: FAILED. 0 passed; 1 failed; 0 ignored; 0 measured; 0 filtered out [INFO] [stdout] [INFO] running `Command { std: "docker" "inspect" "4e1531650dda5ad6f6a776fd2b622dfca5c41529bae39f2f6c70351700dc735f", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "4e1531650dda5ad6f6a776fd2b622dfca5c41529bae39f2f6c70351700dc735f", kill_on_drop: false }` [INFO] [stdout] 4e1531650dda5ad6f6a776fd2b622dfca5c41529bae39f2f6c70351700dc735f