[INFO] updating cached repository https://github.com/mal2017/csc [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "-c" "remote.origin.fetch=refs/heads/*:refs/heads/*" "fetch" "origin" "--force" "--prune", kill_on_drop: false }` [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] d03c33ee5c6bc2e7583bd50315cc6203d9f34510 [INFO] testing mal2017/csc against beta-2020-07-24 for beta-1.46-1 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fmal2017%2Fcsc" "/workspace/builds/worker-5/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-5/source'... [INFO] [stderr] done. [INFO] validating manifest of git repo https://github.com/mal2017/csc on toolchain beta-2020-07-24 [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+beta-2020-07-24" "read-manifest" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] started tweaking git repo https://github.com/mal2017/csc [INFO] finished tweaking git repo https://github.com/mal2017/csc [INFO] tweaked toml for git repo https://github.com/mal2017/csc written to /workspace/builds/worker-5/source/Cargo.toml [INFO] crate git repo https://github.com/mal2017/csc already has a lockfile, it will not be regenerated [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+beta-2020-07-24" "fetch" "--locked" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=0" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env@sha256:a636fd89d022f18117e1dc8fb37a0a009933cdbbe082814857f0e2024962d47c" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2020-07-24" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 09c343193a5cba3a9a77212bfcfe695ef24a05e03310f129d51cc1110d789482 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "09c343193a5cba3a9a77212bfcfe695ef24a05e03310f129d51cc1110d789482", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "09c343193a5cba3a9a77212bfcfe695ef24a05e03310f129d51cc1110d789482", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "09c343193a5cba3a9a77212bfcfe695ef24a05e03310f129d51cc1110d789482", kill_on_drop: false }` [INFO] [stdout] 09c343193a5cba3a9a77212bfcfe695ef24a05e03310f129d51cc1110d789482 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=0" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env@sha256:a636fd89d022f18117e1dc8fb37a0a009933cdbbe082814857f0e2024962d47c" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2020-07-24" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 72e9c4338e35189244592f5ab2d9c0fb4addbc98c00f8ac35bc84bb47f7e5054 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "72e9c4338e35189244592f5ab2d9c0fb4addbc98c00f8ac35bc84bb47f7e5054", kill_on_drop: false }` [INFO] [stderr] Compiling cc v1.0.35 [INFO] [stderr] Compiling syn v0.15.31 [INFO] [stderr] Compiling serde v1.0.90 [INFO] [stderr] Compiling regex v1.1.5 [INFO] [stderr] Compiling bindgen v0.36.1 [INFO] [stderr] Compiling bio v0.25.0 [INFO] [stderr] Compiling ieee754 v0.2.6 [INFO] [stderr] Compiling linear-map v1.2.0 [INFO] [stderr] Compiling proc-macro2 v0.3.5 [INFO] [stderr] Compiling fs-utils v1.1.0 [INFO] [stderr] Compiling clang-sys v0.22.0 [INFO] [stderr] Compiling itertools v0.6.5 [INFO] [stderr] Compiling unicode-normalization v0.1.8 [INFO] [stderr] Compiling memchr v2.2.0 [INFO] [stderr] Compiling memchr v1.0.2 [INFO] [stderr] Compiling which v1.0.5 [INFO] [stderr] Compiling rand v0.4.6 [INFO] [stderr] Compiling num_cpus v1.10.0 [INFO] [stderr] Compiling approx v0.3.2 [INFO] [stderr] Compiling ordered-float v1.0.2 [INFO] [stderr] Compiling quote v0.6.12 [INFO] [stderr] Compiling nom v3.2.1 [INFO] [stderr] Compiling ndarray v0.12.1 [INFO] [stderr] Compiling rayon-core v1.4.1 [INFO] [stderr] Compiling aho-corasick v0.7.3 [INFO] [stderr] Compiling aho-corasick v0.6.10 [INFO] [stderr] Compiling csv-core v0.1.5 [INFO] [stderr] Compiling quote v0.5.2 [INFO] [stderr] Compiling rand v0.3.23 [INFO] [stderr] Compiling regex v0.2.11 [INFO] [stderr] Compiling rayon v1.0.3 [INFO] [stderr] Compiling statrs v0.9.0 [INFO] [stderr] Compiling libloading v0.5.0 [INFO] [stderr] Compiling bzip2-sys v0.1.7 [INFO] [stderr] Compiling libz-sys v1.0.25 [INFO] [stderr] Compiling lzma-sys v0.1.14 [INFO] [stderr] Compiling idna v0.1.5 [INFO] [stderr] Compiling cexpr v0.2.3 [INFO] [stderr] Compiling url v1.7.2 [INFO] [stderr] Compiling env_logger v0.5.13 [INFO] [stderr] Compiling serde_derive v1.0.90 [INFO] [stderr] Compiling vec_map v0.8.1 [INFO] [stderr] Compiling bio-types v0.4.0 [INFO] [stderr] Compiling bv v0.10.0 [INFO] [stderr] Compiling csv v1.0.7 [INFO] [stderr] Compiling multimap v0.4.0 [INFO] [stderr] Compiling clap v2.32.0 [INFO] [stderr] Compiling rust-htslib v0.22.0 [INFO] [stderr] Compiling ngslib v0.1.0 (https://github.com/mal2017/ngslib.git?tag=0.1.0-alpha.2#b34385bf) [INFO] [stderr] Compiling cutsites v0.1.0 (/opt/rustwide/workdir) [INFO] [stdout] warning: unused import: `bio::io::bed::*` [INFO] [stdout] --> src/main.rs:10:5 [INFO] [stdout] | [INFO] [stdout] 10 | use bio::io::bed::*; [INFO] [stdout] | ^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `bio::io::bed::Record` [INFO] [stdout] --> src/main.rs:11:5 [INFO] [stdout] | [INFO] [stdout] 11 | use bio::io::bed::Record; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `itertools::Itertools` [INFO] [stdout] --> src/main.rs:19:5 [INFO] [stdout] | [INFO] [stdout] 19 | use itertools::Itertools; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `ArgGroup` [INFO] [stdout] --> src/main.rs:25:26 [INFO] [stdout] | [INFO] [stdout] 25 | use clap::{App, Arg, ArgGroup}; [INFO] [stdout] | ^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/main.rs:101:9 [INFO] [stdout] | [INFO] [stdout] 101 | let mut bam = bam::IndexedReader::from_path(bp).unwrap(); [INFO] [stdout] | ----^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_mut)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 5 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 2m 47s [INFO] running `Command { std: "docker" "inspect" "72e9c4338e35189244592f5ab2d9c0fb4addbc98c00f8ac35bc84bb47f7e5054", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "72e9c4338e35189244592f5ab2d9c0fb4addbc98c00f8ac35bc84bb47f7e5054", kill_on_drop: false }` [INFO] [stdout] 72e9c4338e35189244592f5ab2d9c0fb4addbc98c00f8ac35bc84bb47f7e5054 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=0" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env@sha256:a636fd89d022f18117e1dc8fb37a0a009933cdbbe082814857f0e2024962d47c" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2020-07-24" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] cb47a8e425c8eed01b32540b8de147c6688578670e1f242266c578034cde516d [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "cb47a8e425c8eed01b32540b8de147c6688578670e1f242266c578034cde516d", kill_on_drop: false }` [INFO] [stderr] Compiling cutsites v0.1.0 (/opt/rustwide/workdir) [INFO] [stdout] warning: unused import: `bio::io::bed::*` [INFO] [stdout] --> src/main.rs:10:5 [INFO] [stdout] | [INFO] [stdout] 10 | use bio::io::bed::*; [INFO] [stdout] | ^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `bio::io::bed::Record` [INFO] [stdout] --> src/main.rs:11:5 [INFO] [stdout] | [INFO] [stdout] 11 | use bio::io::bed::Record; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `itertools::Itertools` [INFO] [stdout] --> src/main.rs:19:5 [INFO] [stdout] | [INFO] [stdout] 19 | use itertools::Itertools; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `ArgGroup` [INFO] [stdout] --> src/main.rs:25:26 [INFO] [stdout] | [INFO] [stdout] 25 | use clap::{App, Arg, ArgGroup}; [INFO] [stdout] | ^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/main.rs:101:9 [INFO] [stdout] | [INFO] [stdout] 101 | let mut bam = bam::IndexedReader::from_path(bp).unwrap(); [INFO] [stdout] | ----^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_mut)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 5 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 1.64s [INFO] running `Command { std: "docker" "inspect" "cb47a8e425c8eed01b32540b8de147c6688578670e1f242266c578034cde516d", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "cb47a8e425c8eed01b32540b8de147c6688578670e1f242266c578034cde516d", kill_on_drop: false }` [INFO] [stdout] cb47a8e425c8eed01b32540b8de147c6688578670e1f242266c578034cde516d [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=0" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env@sha256:a636fd89d022f18117e1dc8fb37a0a009933cdbbe082814857f0e2024962d47c" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2020-07-24" "test" "--frozen", kill_on_drop: false }` [INFO] [stdout] ff665631fb2700350e958c0f8c26974dd2e7975171b0dbd21827ce0841f545a5 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "ff665631fb2700350e958c0f8c26974dd2e7975171b0dbd21827ce0841f545a5", kill_on_drop: false }` [INFO] [stderr] warning: unused import: `bio::io::bed::*` [INFO] [stderr] --> src/main.rs:10:5 [INFO] [stderr] | [INFO] [stderr] 10 | use bio::io::bed::*; [INFO] [stderr] | ^^^^^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(unused_imports)]` on by default [INFO] [stderr] [INFO] [stderr] warning: unused import: `bio::io::bed::Record` [INFO] [stderr] --> src/main.rs:11:5 [INFO] [stderr] | [INFO] [stderr] 11 | use bio::io::bed::Record; [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: unused import: `itertools::Itertools` [INFO] [stderr] --> src/main.rs:19:5 [INFO] [stderr] | [INFO] [stderr] 19 | use itertools::Itertools; [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: unused import: `ArgGroup` [INFO] [stderr] --> src/main.rs:25:26 [INFO] [stderr] | [INFO] [stderr] 25 | use clap::{App, Arg, ArgGroup}; [INFO] [stderr] | ^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: variable does not need to be mutable [INFO] [stderr] --> src/main.rs:101:9 [INFO] [stderr] | [INFO] [stderr] 101 | let mut bam = bam::IndexedReader::from_path(bp).unwrap(); [INFO] [stderr] | ----^^^ [INFO] [stderr] | | [INFO] [stderr] | help: remove this `mut` [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(unused_mut)]` on by default [INFO] [stderr] [INFO] [stderr] warning: 5 warnings emitted [INFO] [stderr] [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 0.11s [INFO] [stderr] Running /opt/rustwide/target/debug/deps/cutsites-96982d95bd99c3ff [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out [INFO] [stdout] [INFO] running `Command { std: "docker" "inspect" "ff665631fb2700350e958c0f8c26974dd2e7975171b0dbd21827ce0841f545a5", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "ff665631fb2700350e958c0f8c26974dd2e7975171b0dbd21827ce0841f545a5", kill_on_drop: false }` [INFO] [stdout] ff665631fb2700350e958c0f8c26974dd2e7975171b0dbd21827ce0841f545a5