[INFO] updating cached repository https://github.com/TuBieJun/stat_mut_sampleratio [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "-c" "remote.origin.fetch=refs/heads/*:refs/heads/*" "fetch" "origin" "--force" "--prune", kill_on_drop: false }` [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] 0163827d32c94da365c78519e8ce537f7b7a211c [INFO] testing TuBieJun/stat_mut_sampleratio against beta-2020-07-24 for beta-1.46-1 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FTuBieJun%2Fstat_mut_sampleratio" "/workspace/builds/worker-5/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-5/source'... [INFO] [stderr] done. [INFO] validating manifest of git repo https://github.com/TuBieJun/stat_mut_sampleratio on toolchain beta-2020-07-24 [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+beta-2020-07-24" "read-manifest" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] started tweaking git repo https://github.com/TuBieJun/stat_mut_sampleratio [INFO] finished tweaking git repo https://github.com/TuBieJun/stat_mut_sampleratio [INFO] tweaked toml for git repo https://github.com/TuBieJun/stat_mut_sampleratio written to /workspace/builds/worker-5/source/Cargo.toml [INFO] crate git repo https://github.com/TuBieJun/stat_mut_sampleratio already has a lockfile, it will not be regenerated [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+beta-2020-07-24" "fetch" "--locked" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=0" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env@sha256:a636fd89d022f18117e1dc8fb37a0a009933cdbbe082814857f0e2024962d47c" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2020-07-24" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 6ead5a3bf46aa044aed6fa4bf2771a23d80f6b52a498df06c5cde6c44189e3d5 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "6ead5a3bf46aa044aed6fa4bf2771a23d80f6b52a498df06c5cde6c44189e3d5", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "6ead5a3bf46aa044aed6fa4bf2771a23d80f6b52a498df06c5cde6c44189e3d5", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "6ead5a3bf46aa044aed6fa4bf2771a23d80f6b52a498df06c5cde6c44189e3d5", kill_on_drop: false }` [INFO] [stdout] 6ead5a3bf46aa044aed6fa4bf2771a23d80f6b52a498df06c5cde6c44189e3d5 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=0" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env@sha256:a636fd89d022f18117e1dc8fb37a0a009933cdbbe082814857f0e2024962d47c" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2020-07-24" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] a7ddb05cd63e2a625f58d14b6f2e16175c684800a3ab3bc3926efd20884bd635 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "a7ddb05cd63e2a625f58d14b6f2e16175c684800a3ab3bc3926efd20884bd635", kill_on_drop: false }` [INFO] [stderr] Compiling clap v2.29.2 [INFO] [stderr] Compiling stat_germline_pos v0.1.0 (/opt/rustwide/workdir) [INFO] [stdout] warning: unused import: `SubCommand` [INFO] [stdout] --> src/main.rs:9:22 [INFO] [stdout] | [INFO] [stdout] 9 | use clap::{Arg, App, SubCommand}; [INFO] [stdout] | ^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/main.rs:18:9 [INFO] [stdout] | [INFO] [stdout] 18 | let mut f = File::open(vcf_l) [INFO] [stdout] | ----^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_mut)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/main.rs:40:21 [INFO] [stdout] | [INFO] [stdout] 40 | let mut dp_info:Vec<&str>; [INFO] [stdout] | ----^^^^^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/main.rs:58:25 [INFO] [stdout] | [INFO] [stdout] 58 | let mut n_index:usize; [INFO] [stdout] | ----^^^^^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `D_germline` should have a snake case name [INFO] [stdout] --> src/main.rs:13:13 [INFO] [stdout] | [INFO] [stdout] 13 | D_germline:&mut HashMap>) -> u32 { [INFO] [stdout] | ^^^^^^^^^^ help: convert the identifier to snake case: `d_germline` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(non_snake_case)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `D_germline` should have a snake case name [INFO] [stdout] --> src/main.rs:96:53 [INFO] [stdout] | [INFO] [stdout] 96 | fn out_info(out_file:&str, panel_list:&Vec, D_germline:&HashMap>, sample_num_list:&Vec) { [INFO] [stdout] | ^^^^^^^^^^ help: convert the identifier to snake case: `d_germline` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused `std::result::Result` that must be used [INFO] [stdout] --> src/main.rs:100:5 [INFO] [stdout] | [INFO] [stdout] 100 | writer.write(header.as_bytes()); [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_must_use)]` on by default [INFO] [stdout] = note: this `Result` may be an `Err` variant, which should be handled [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused `std::result::Result` that must be used [INFO] [stdout] --> src/main.rs:112:9 [INFO] [stdout] | [INFO] [stdout] 112 | writer.write(info.as_bytes()); [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: this `Result` may be an `Err` variant, which should be handled [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `D_germline` should have a snake case name [INFO] [stdout] --> src/main.rs:155:13 [INFO] [stdout] | [INFO] [stdout] 155 | let mut D_germline:HashMap> = HashMap::new(); [INFO] [stdout] | ^^^^^^^^^^ help: convert the identifier to snake case: `d_germline` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 9 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 13.57s [INFO] running `Command { std: "docker" "inspect" "a7ddb05cd63e2a625f58d14b6f2e16175c684800a3ab3bc3926efd20884bd635", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "a7ddb05cd63e2a625f58d14b6f2e16175c684800a3ab3bc3926efd20884bd635", kill_on_drop: false }` [INFO] [stdout] a7ddb05cd63e2a625f58d14b6f2e16175c684800a3ab3bc3926efd20884bd635 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=0" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env@sha256:a636fd89d022f18117e1dc8fb37a0a009933cdbbe082814857f0e2024962d47c" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2020-07-24" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 629451a20ceff440d534ca99c50a32b3592784a407cb7d40b29323051da8283f [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "629451a20ceff440d534ca99c50a32b3592784a407cb7d40b29323051da8283f", kill_on_drop: false }` [INFO] [stderr] Compiling stat_germline_pos v0.1.0 (/opt/rustwide/workdir) [INFO] [stdout] warning: unused import: `SubCommand` [INFO] [stdout] --> src/main.rs:9:22 [INFO] [stdout] | [INFO] [stdout] 9 | use clap::{Arg, App, SubCommand}; [INFO] [stdout] | ^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/main.rs:18:9 [INFO] [stdout] | [INFO] [stdout] 18 | let mut f = File::open(vcf_l) [INFO] [stdout] | ----^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_mut)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/main.rs:40:21 [INFO] [stdout] | [INFO] [stdout] 40 | let mut dp_info:Vec<&str>; [INFO] [stdout] | ----^^^^^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/main.rs:58:25 [INFO] [stdout] | [INFO] [stdout] 58 | let mut n_index:usize; [INFO] [stdout] | ----^^^^^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `D_germline` should have a snake case name [INFO] [stdout] --> src/main.rs:13:13 [INFO] [stdout] | [INFO] [stdout] 13 | D_germline:&mut HashMap>) -> u32 { [INFO] [stdout] | ^^^^^^^^^^ help: convert the identifier to snake case: `d_germline` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(non_snake_case)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `D_germline` should have a snake case name [INFO] [stdout] --> src/main.rs:96:53 [INFO] [stdout] | [INFO] [stdout] 96 | fn out_info(out_file:&str, panel_list:&Vec, D_germline:&HashMap>, sample_num_list:&Vec) { [INFO] [stdout] | ^^^^^^^^^^ help: convert the identifier to snake case: `d_germline` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused `std::result::Result` that must be used [INFO] [stdout] --> src/main.rs:100:5 [INFO] [stdout] | [INFO] [stdout] 100 | writer.write(header.as_bytes()); [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_must_use)]` on by default [INFO] [stdout] = note: this `Result` may be an `Err` variant, which should be handled [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused `std::result::Result` that must be used [INFO] [stdout] --> src/main.rs:112:9 [INFO] [stdout] | [INFO] [stdout] 112 | writer.write(info.as_bytes()); [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: this `Result` may be an `Err` variant, which should be handled [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `D_germline` should have a snake case name [INFO] [stdout] --> src/main.rs:155:13 [INFO] [stdout] | [INFO] [stdout] 155 | let mut D_germline:HashMap> = HashMap::new(); [INFO] [stdout] | ^^^^^^^^^^ help: convert the identifier to snake case: `d_germline` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 9 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 0.90s [INFO] running `Command { std: "docker" "inspect" "629451a20ceff440d534ca99c50a32b3592784a407cb7d40b29323051da8283f", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "629451a20ceff440d534ca99c50a32b3592784a407cb7d40b29323051da8283f", kill_on_drop: false }` [INFO] [stdout] 629451a20ceff440d534ca99c50a32b3592784a407cb7d40b29323051da8283f [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=0" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env@sha256:a636fd89d022f18117e1dc8fb37a0a009933cdbbe082814857f0e2024962d47c" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2020-07-24" "test" "--frozen", kill_on_drop: false }` [INFO] [stdout] 956ebb0f0a55cf2e00ba1d37b3e01c77adec15403a02ba33eda516440cabe4f9 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "956ebb0f0a55cf2e00ba1d37b3e01c77adec15403a02ba33eda516440cabe4f9", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stdout] [INFO] [stderr] warning: unused import: `SubCommand` [INFO] [stdout] running 0 tests [INFO] [stderr] --> src/main.rs:9:22 [INFO] [stdout] [INFO] [stderr] | [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out [INFO] [stderr] 9 | use clap::{Arg, App, SubCommand}; [INFO] [stdout] [INFO] [stderr] | ^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(unused_imports)]` on by default [INFO] [stderr] [INFO] [stderr] warning: variable does not need to be mutable [INFO] [stderr] --> src/main.rs:18:9 [INFO] [stderr] | [INFO] [stderr] 18 | let mut f = File::open(vcf_l) [INFO] [stderr] | ----^ [INFO] [stderr] | | [INFO] [stderr] | help: remove this `mut` [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(unused_mut)]` on by default [INFO] [stderr] [INFO] [stderr] warning: variable does not need to be mutable [INFO] [stderr] --> src/main.rs:40:21 [INFO] [stderr] | [INFO] [stderr] 40 | let mut dp_info:Vec<&str>; [INFO] [stderr] | ----^^^^^^^ [INFO] [stderr] | | [INFO] [stderr] | help: remove this `mut` [INFO] [stderr] [INFO] [stderr] warning: variable does not need to be mutable [INFO] [stderr] --> src/main.rs:58:25 [INFO] [stderr] | [INFO] [stderr] 58 | let mut n_index:usize; [INFO] [stderr] | ----^^^^^^^ [INFO] [stderr] | | [INFO] [stderr] | help: remove this `mut` [INFO] [stderr] [INFO] [stderr] warning: variable `D_germline` should have a snake case name [INFO] [stderr] --> src/main.rs:13:13 [INFO] [stderr] | [INFO] [stderr] 13 | D_germline:&mut HashMap>) -> u32 { [INFO] [stderr] | ^^^^^^^^^^ help: convert the identifier to snake case: `d_germline` [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(non_snake_case)]` on by default [INFO] [stderr] [INFO] [stderr] warning: variable `D_germline` should have a snake case name [INFO] [stderr] --> src/main.rs:96:53 [INFO] [stderr] | [INFO] [stderr] 96 | fn out_info(out_file:&str, panel_list:&Vec, D_germline:&HashMap>, sample_num_list:&Vec) { [INFO] [stderr] | ^^^^^^^^^^ help: convert the identifier to snake case: `d_germline` [INFO] [stderr] [INFO] [stderr] warning: unused `std::result::Result` that must be used [INFO] [stderr] --> src/main.rs:100:5 [INFO] [stderr] | [INFO] [stderr] 100 | writer.write(header.as_bytes()); [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(unused_must_use)]` on by default [INFO] [stderr] = note: this `Result` may be an `Err` variant, which should be handled [INFO] [stderr] [INFO] [stderr] warning: unused `std::result::Result` that must be used [INFO] [stderr] --> src/main.rs:112:9 [INFO] [stderr] | [INFO] [stderr] 112 | writer.write(info.as_bytes()); [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: this `Result` may be an `Err` variant, which should be handled [INFO] [stderr] [INFO] [stderr] warning: variable `D_germline` should have a snake case name [INFO] [stderr] --> src/main.rs:155:13 [INFO] [stderr] | [INFO] [stderr] 155 | let mut D_germline:HashMap> = HashMap::new(); [INFO] [stderr] | ^^^^^^^^^^ help: convert the identifier to snake case: `d_germline` [INFO] [stderr] [INFO] [stderr] warning: 9 warnings emitted [INFO] [stderr] [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 1.96s [INFO] [stderr] Running /opt/rustwide/target/debug/deps/stat_germline_pos-ee5f6e0d6b58e007 [INFO] running `Command { std: "docker" "inspect" "956ebb0f0a55cf2e00ba1d37b3e01c77adec15403a02ba33eda516440cabe4f9", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "956ebb0f0a55cf2e00ba1d37b3e01c77adec15403a02ba33eda516440cabe4f9", kill_on_drop: false }` [INFO] [stdout] 956ebb0f0a55cf2e00ba1d37b3e01c77adec15403a02ba33eda516440cabe4f9