[INFO] cloning repository https://github.com/MikkelSchubert/crispy [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/MikkelSchubert/crispy" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FMikkelSchubert%2Fcrispy", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FMikkelSchubert%2Fcrispy'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] a2199a853d104f2c76db2150825954240b27d9a8 [INFO] testing MikkelSchubert/crispy against beta-2020-07-24 for beta-1.46-1 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FMikkelSchubert%2Fcrispy" "/workspace/builds/worker-9/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-9/source'... [INFO] [stderr] done. [INFO] validating manifest of git repo https://github.com/MikkelSchubert/crispy on toolchain beta-2020-07-24 [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+beta-2020-07-24" "read-manifest" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] started tweaking git repo https://github.com/MikkelSchubert/crispy [INFO] finished tweaking git repo https://github.com/MikkelSchubert/crispy [INFO] tweaked toml for git repo https://github.com/MikkelSchubert/crispy written to /workspace/builds/worker-9/source/Cargo.toml [INFO] crate git repo https://github.com/MikkelSchubert/crispy already has a lockfile, it will not be regenerated [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+beta-2020-07-24" "fetch" "--locked" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-9/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-9/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=0" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env@sha256:a636fd89d022f18117e1dc8fb37a0a009933cdbbe082814857f0e2024962d47c" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2020-07-24" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] [stdout] 0bc78b22304e966e7dd7a87ac2415fa9534942e7075053dc94a398e77afe5733 [INFO] running `Command { std: "docker" "start" "-a" "0bc78b22304e966e7dd7a87ac2415fa9534942e7075053dc94a398e77afe5733", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "0bc78b22304e966e7dd7a87ac2415fa9534942e7075053dc94a398e77afe5733", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "0bc78b22304e966e7dd7a87ac2415fa9534942e7075053dc94a398e77afe5733", kill_on_drop: false }` [INFO] [stdout] 0bc78b22304e966e7dd7a87ac2415fa9534942e7075053dc94a398e77afe5733 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-9/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-9/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=0" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env@sha256:a636fd89d022f18117e1dc8fb37a0a009933cdbbe082814857f0e2024962d47c" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2020-07-24" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 5a3c8a85628308df8ef689905db989cf9d63c9b15bdd569ff9ef7d0f57425866 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "5a3c8a85628308df8ef689905db989cf9d63c9b15bdd569ff9ef7d0f57425866", kill_on_drop: false }` [INFO] [stderr] Compiling libc v0.2.62 [INFO] [stderr] Compiling autocfg v0.1.6 [INFO] [stderr] Compiling proc-macro2 v1.0.5 [INFO] [stderr] Compiling syn v1.0.5 [INFO] [stderr] Compiling memchr v2.2.1 [INFO] [stderr] Compiling serde v1.0.101 [INFO] [stderr] Compiling semver-parser v0.7.0 [INFO] [stderr] Compiling byteorder v1.3.2 [INFO] [stderr] Compiling arrayvec v0.4.12 [INFO] [stderr] Compiling proc-macro2 v0.4.30 [INFO] [stderr] Compiling unicode-xid v0.1.0 [INFO] [stderr] Compiling nodrop v0.1.14 [INFO] [stderr] Compiling semver v0.1.20 [INFO] [stderr] Compiling regex-syntax v0.6.12 [INFO] [stderr] Compiling cc v1.0.45 [INFO] [stderr] Compiling feature-probe v0.1.1 [INFO] [stderr] Compiling ryu v1.0.0 [INFO] [stderr] Compiling scopeguard v1.0.0 [INFO] [stderr] Compiling unicode-width v0.1.6 [INFO] [stderr] Compiling syn v0.15.44 [INFO] [stderr] Compiling either v1.5.3 [INFO] [stderr] Compiling matrixmultiply v0.1.15 [INFO] [stderr] Compiling unicode-segmentation v1.3.0 [INFO] [stderr] Compiling version_check v0.1.5 [INFO] [stderr] Compiling bitflags v1.2.0 [INFO] [stderr] Compiling rawpointer v0.1.0 [INFO] [stderr] Compiling rayon-core v1.6.0 [INFO] [stderr] Compiling ndarray v0.12.1 [INFO] [stderr] Compiling itoa v0.4.4 [INFO] [stderr] Compiling bio v0.28.2 [INFO] [stderr] Compiling ordermap v0.3.5 [INFO] [stderr] Compiling quick-error v1.2.2 [INFO] [stderr] Compiling bit-vec v0.5.1 [INFO] [stderr] Compiling fixedbitset v0.1.9 [INFO] [stderr] Compiling rustc-demangle v0.1.16 [INFO] [stderr] Compiling strsim v0.8.0 [INFO] [stderr] Compiling fnv v1.0.6 [INFO] [stderr] Compiling number_prefix v0.3.0 [INFO] [stderr] Compiling ansi_term v0.11.0 [INFO] [stderr] Compiling custom_derive v0.1.7 [INFO] [stderr] Compiling bytecount v0.3.2 [INFO] [stderr] Compiling strum v0.13.0 [INFO] [stderr] Compiling thread_local v0.3.6 [INFO] [stderr] Compiling crossbeam-utils v0.6.6 [INFO] [stderr] Compiling semver v0.9.0 [INFO] [stderr] Compiling rustc_version v0.1.7 [INFO] [stderr] Compiling bv v0.10.0 [INFO] [stderr] Compiling textwrap v0.11.0 [INFO] [stderr] Compiling itertools v0.7.11 [INFO] [stderr] Compiling num-traits v0.2.8 [INFO] [stderr] Compiling num-complex v0.2.3 [INFO] [stderr] Compiling num-integer v0.1.41 [INFO] [stderr] Compiling bit-set v0.5.1 [INFO] [stderr] Compiling error-chain v0.12.1 [INFO] [stderr] Compiling heck v0.3.1 [INFO] [stderr] Compiling petgraph v0.4.13 [INFO] [stderr] Compiling rustc_version v0.2.3 [INFO] [stderr] Compiling crossbeam-queue v0.1.2 [INFO] [stderr] Compiling newtype_derive v0.1.6 [INFO] [stderr] Compiling quote v0.6.13 [INFO] [stderr] Compiling rand v0.4.6 [INFO] [stderr] Compiling num_cpus v1.10.1 [INFO] [stderr] Compiling clicolors-control v1.0.1 [INFO] [stderr] Compiling termios v0.3.1 [INFO] [stderr] Compiling atty v0.2.13 [INFO] [stderr] Compiling memoffset v0.5.1 [INFO] [stderr] Compiling regex-automata v0.1.8 [INFO] [stderr] Compiling fxhash v0.2.1 [INFO] [stderr] Compiling quote v1.0.2 [INFO] [stderr] Compiling backtrace-sys v0.1.31 [INFO] [stderr] Compiling aho-corasick v0.7.6 [INFO] [stderr] Compiling csv-core v0.1.6 [INFO] [stderr] Compiling crossbeam-epoch v0.7.2 [INFO] [stderr] Compiling rand v0.3.23 [INFO] [stderr] Compiling statrs v0.9.0 [INFO] [stderr] Compiling regex v1.3.1 [INFO] [stderr] Compiling crossbeam-deque v0.7.1 [INFO] [stderr] Compiling itertools-num v0.1.3 [INFO] [stderr] Compiling ordered-float v1.0.2 [INFO] [stderr] Compiling approx v0.3.2 [INFO] [stderr] Compiling backtrace v0.3.38 [INFO] [stderr] Compiling rayon v1.2.0 [INFO] [stderr] Compiling console v0.9.0 [INFO] [stderr] Compiling indicatif v0.12.0 [INFO] [stderr] Compiling serde_derive v1.0.101 [INFO] [stderr] Compiling strum_macros v0.13.0 [INFO] [stderr] Compiling bstr v0.2.8 [INFO] [stderr] Compiling vec_map v0.8.1 [INFO] [stderr] Compiling multimap v0.4.0 [INFO] [stderr] Compiling bio-types v0.5.1 [INFO] [stderr] Compiling clap v2.33.0 [INFO] [stderr] Compiling csv v1.1.1 [INFO] [stderr] Compiling crispyr v0.1.0 (/opt/rustwide/workdir) [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 1m 42s [INFO] running `Command { std: "docker" "inspect" "5a3c8a85628308df8ef689905db989cf9d63c9b15bdd569ff9ef7d0f57425866", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "5a3c8a85628308df8ef689905db989cf9d63c9b15bdd569ff9ef7d0f57425866", kill_on_drop: false }` [INFO] [stdout] 5a3c8a85628308df8ef689905db989cf9d63c9b15bdd569ff9ef7d0f57425866 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-9/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-9/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=0" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env@sha256:a636fd89d022f18117e1dc8fb37a0a009933cdbbe082814857f0e2024962d47c" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2020-07-24" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] e7ac7508391bed779bfd97987ae14da06dc685c407714ea5c69f42365de0f95e [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "e7ac7508391bed779bfd97987ae14da06dc685c407714ea5c69f42365de0f95e", kill_on_drop: false }` [INFO] [stderr] Compiling crispyr v0.1.0 (/opt/rustwide/workdir) [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 9.69s [INFO] running `Command { std: "docker" "inspect" "e7ac7508391bed779bfd97987ae14da06dc685c407714ea5c69f42365de0f95e", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "e7ac7508391bed779bfd97987ae14da06dc685c407714ea5c69f42365de0f95e", kill_on_drop: false }` [INFO] [stdout] e7ac7508391bed779bfd97987ae14da06dc685c407714ea5c69f42365de0f95e [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-9/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-9/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=0" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env@sha256:a636fd89d022f18117e1dc8fb37a0a009933cdbbe082814857f0e2024962d47c" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2020-07-24" "test" "--frozen", kill_on_drop: false }` [INFO] [stdout] 3dc467ef65ee497f4de7930c23286ee8a6ca29541f132988b38dfea41d3f25ae [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "3dc467ef65ee497f4de7930c23286ee8a6ca29541f132988b38dfea41d3f25ae", kill_on_drop: false }` [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 0.19s [INFO] [stderr] Running /opt/rustwide/target/debug/deps/crispyr-df7c9450cbeba74b [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out [INFO] [stdout] [INFO] [stderr] Running /opt/rustwide/target/debug/deps/crispyr-e95afed414acc5ee [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out [INFO] [stdout] [INFO] [stderr] Running /opt/rustwide/target/debug/deps/enzyme-cc6b3ca015696945 [INFO] [stdout] [INFO] [stdout] running 3 tests [INFO] [stdout] test test_enzyme_mad7 ... ok [INFO] [stdout] test test_enzyme_unknown ... ok [INFO] [stdout] test test_enzyme_cas9 ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 3 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out [INFO] [stdout] [INFO] [stderr] Running /opt/rustwide/target/debug/deps/index-63321b0fcd0f47d4 [INFO] [stdout] [INFO] [stdout] running 12 tests [INFO] [stdout] test test_position_to_u64_forward_pos_no_ref ... ok [INFO] [stdout] test test_position_to_u64_reverse_neg_pos_no_ref ... ok [INFO] [stdout] test test_position_to_u64_reverse_pos_no_ref ... ok [INFO] [stdout] test test_position_to_u64_reverse_pos_and_ref ... ok [INFO] [stdout] test test_position_to_u64_reverse_ref_no_pos ... ok [INFO] [stdout] test test_position_to_u64_reverse_zeroes ... ok [INFO] [stdout] test test_position_to_u64_reverse_neg_pos_and_ref ... ok [INFO] [stdout] test test_position_to_u64_forward_neg_pos_no_ref ... ok [INFO] [stdout] test test_position_to_u64_forward_ref_no_pos ... ok [INFO] [stdout] test test_position_to_u64_forward_pos_and_ref ... ok [INFO] [stdout] test test_position_to_u64_forward_zeroes ... ok [INFO] [stdout] test test_position_to_u64_forward_neg_pos_and_ref ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 12 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out [INFO] [stdout] [INFO] [stderr] Running /opt/rustwide/target/debug/deps/iupac-76314763ee290b7d [INFO] [stdout] [INFO] [stdout] running 3 tests [INFO] [stdout] test test_degenerate_nucleotide ... ok [INFO] [stdout] test test_non_nucleotide_values ... ok [INFO] [stdout] test test_basic_nucleotides ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 3 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out [INFO] [stdout] [INFO] [stderr] Running /opt/rustwide/target/debug/deps/pam-53d33dad2039245e [INFO] [stdout] [INFO] [stdout] running 11 tests [INFO] [stdout] test test_empty_head_pam_kmer_slice ... ok [INFO] [stdout] test test_head_pam_matches ... ok [INFO] [stdout] test test_tail_pam_matches ... ok [INFO] [stdout] test test_to_string ... ok [INFO] [stdout] test test_empty_head_pam_matches ... ok [INFO] [stdout] test test_pam_lengths ... ok [INFO] [stdout] test test_empty_tail_pam_matches ... ok [INFO] [stdout] test test_tail_kmer ... ok [INFO] [stdout] test test_head_kmer ... ok [INFO] [stdout] test test_pam_position ... ok [INFO] [stdout] test test_empty_tail_pam_kmer_slice ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 11 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out [INFO] [stdout] [INFO] [stderr] Doc-tests crispyr [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out [INFO] [stdout] [INFO] running `Command { std: "docker" "inspect" "3dc467ef65ee497f4de7930c23286ee8a6ca29541f132988b38dfea41d3f25ae", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "3dc467ef65ee497f4de7930c23286ee8a6ca29541f132988b38dfea41d3f25ae", kill_on_drop: false }` [INFO] [stdout] 3dc467ef65ee497f4de7930c23286ee8a6ca29541f132988b38dfea41d3f25ae