[INFO] fetching crate rust-htslib 0.32.0... [INFO] testing rust-htslib-0.32.0 against 1.45.2 for beta-1.46-1 [INFO] extracting crate rust-htslib 0.32.0 into /workspace/builds/worker-11/source [INFO] validating manifest of crates.io crate rust-htslib 0.32.0 on toolchain 1.45.2 [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+1.45.2" "read-manifest" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] removed /workspace/builds/worker-11/source/.cargo/config [INFO] started tweaking crates.io crate rust-htslib 0.32.0 [INFO] finished tweaking crates.io crate rust-htslib 0.32.0 [INFO] tweaked toml for crates.io crate rust-htslib 0.32.0 written to /workspace/builds/worker-11/source/Cargo.toml [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+1.45.2" "generate-lockfile" "--manifest-path" "Cargo.toml" "-Zno-index-update", kill_on_drop: false }` [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+1.45.2" "fetch" "--locked" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-11/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-11/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=0" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env@sha256:a636fd89d022f18117e1dc8fb37a0a009933cdbbe082814857f0e2024962d47c" "/opt/rustwide/cargo-home/bin/cargo" "+1.45.2" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] [stdout] 7afe5b731e0c6432fbade54c0df33182ab013a81e28ce8bcaca0515f5c7c1752 [INFO] running `Command { std: "docker" "start" "-a" "7afe5b731e0c6432fbade54c0df33182ab013a81e28ce8bcaca0515f5c7c1752", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "7afe5b731e0c6432fbade54c0df33182ab013a81e28ce8bcaca0515f5c7c1752", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "7afe5b731e0c6432fbade54c0df33182ab013a81e28ce8bcaca0515f5c7c1752", kill_on_drop: false }` [INFO] [stdout] 7afe5b731e0c6432fbade54c0df33182ab013a81e28ce8bcaca0515f5c7c1752 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-11/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-11/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=0" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env@sha256:a636fd89d022f18117e1dc8fb37a0a009933cdbbe082814857f0e2024962d47c" "/opt/rustwide/cargo-home/bin/cargo" "+1.45.2" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] c3d7956ca639c58c205a5a4a1cac2d1fb873652b873e7f83b5f2ae8356d44077 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "c3d7956ca639c58c205a5a4a1cac2d1fb873652b873e7f83b5f2ae8356d44077", kill_on_drop: false }` [INFO] [stderr] Compiling linear-map v1.2.0 [INFO] [stderr] Compiling custom_derive v0.1.7 [INFO] [stderr] Compiling ieee754 v0.2.6 [INFO] [stderr] Compiling fs-utils v1.1.4 [INFO] [stderr] Compiling newtype_derive v0.1.6 [INFO] [stderr] Compiling jobserver v0.1.21 [INFO] [stderr] Compiling derive-new v0.5.8 [INFO] [stderr] Compiling thiserror-impl v1.0.20 [INFO] [stderr] Compiling cc v1.0.58 [INFO] [stderr] Compiling openssl-src v111.10.2+1.1.1g [INFO] [stderr] Compiling openssl-sys v0.9.58 [INFO] [stderr] Compiling libz-sys v1.0.25 [INFO] [stderr] Compiling curl-sys v0.4.34+curl-7.71.1 [INFO] [stderr] Compiling bzip2-sys v0.1.9+1.0.8 [INFO] [stderr] Compiling lzma-sys v0.1.16 [INFO] [stderr] Compiling hts-sys v1.10.3 [INFO] [stderr] Compiling bio-types v0.7.0 [INFO] [stderr] Compiling thiserror v1.0.20 [INFO] [stderr] Compiling rust-htslib v0.32.0 (/opt/rustwide/workdir) [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 1m 16s [INFO] running `Command { std: "docker" "inspect" "c3d7956ca639c58c205a5a4a1cac2d1fb873652b873e7f83b5f2ae8356d44077", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "c3d7956ca639c58c205a5a4a1cac2d1fb873652b873e7f83b5f2ae8356d44077", kill_on_drop: false }` [INFO] [stdout] c3d7956ca639c58c205a5a4a1cac2d1fb873652b873e7f83b5f2ae8356d44077 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-11/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-11/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=0" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env@sha256:a636fd89d022f18117e1dc8fb37a0a009933cdbbe082814857f0e2024962d47c" "/opt/rustwide/cargo-home/bin/cargo" "+1.45.2" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] fdd0f26bf991d114cd468f0027388e668480941b85e5de92b2e99196d67f21b7 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "fdd0f26bf991d114cd468f0027388e668480941b85e5de92b2e99196d67f21b7", kill_on_drop: false }` [INFO] [stderr] Compiling pretty_assertions v0.6.1 [INFO] [stderr] Compiling tempdir v0.3.7 [INFO] [stderr] Compiling rust-htslib v0.32.0 (/opt/rustwide/workdir) [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 14.79s [INFO] running `Command { std: "docker" "inspect" "fdd0f26bf991d114cd468f0027388e668480941b85e5de92b2e99196d67f21b7", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "fdd0f26bf991d114cd468f0027388e668480941b85e5de92b2e99196d67f21b7", kill_on_drop: false }` [INFO] [stdout] fdd0f26bf991d114cd468f0027388e668480941b85e5de92b2e99196d67f21b7 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-11/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-11/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=0" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env@sha256:a636fd89d022f18117e1dc8fb37a0a009933cdbbe082814857f0e2024962d47c" "/opt/rustwide/cargo-home/bin/cargo" "+1.45.2" "test" "--frozen", kill_on_drop: false }` [INFO] [stdout] b5d9f2c222f53c593c6aaeb45f8db6c2576c193105370e97bd64efe779ae51ae [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "b5d9f2c222f53c593c6aaeb45f8db6c2576c193105370e97bd64efe779ae51ae", kill_on_drop: false }` [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 0.09s [INFO] [stderr] Running /opt/rustwide/target/debug/deps/rust_htslib-7403f37d33d7b3d9 [INFO] [stdout] [INFO] [stdout] running 75 tests [INFO] [stdout] test bam::buffer::tests::test_buffer ... ok [INFO] [stdout] test bam::ext::tests::spliced_reads ... ok [INFO] [stdout] test bam::pileup::tests::test_max_pileup ... ok [INFO] [stdout] test bam::ext::tests::test_introns ... ok [INFO] [stdout] test bam::record::tests::test_clone ... ok [INFO] [stdout] test bam::record::tests::test_cigar_string ... ok [INFO] [stdout] test bam::record::tests::test_cigar_read_pos ... ok [INFO] [stdout] test bam::record::tests::test_flags ... ok [INFO] [stdout] test bam::tests::test_bam_fails_on_toml ... ok [INFO] [stdout] test bam::tests::test_compression_level_conversion ... ok [INFO] [stdout] test bam::tests::parse_from_sam ... ok [INFO] [stdout] test bam::ext::tests::test_aligned_pairs ... ok [INFO] [stdout] test bam::tests::test_cigar_modes ... ok [INFO] [stdout] test bam::tests::test_pileup ... ok [INFO] [stdout] test bam::tests::test_read ... ok [INFO] [stdout] test bam::tests::test_indexde_bam_fails_on_vcf ... ok [INFO] [stdout] test bam::tests::test_copy_template ... ok [INFO] [stdout] test bam::tests::test_bam_fails_on_vcf ... ok [INFO] [stdout] test bam::tests::test_read_sam_header ... ok [INFO] [stderr] [E::hts_open_format] Failed to open file "./test/bam2sam_out.sam" : Read-only file system [INFO] [stdout] test bam::tests::test_remove_aux ... ok [INFO] [stdout] test bam::tests::test_read_indexed ... ok [INFO] [stdout] test bam::ext::tests::test_reference_start_end ... ok [INFO] [stdout] test bam::record::alignment_cigar_tests::test_cigar ... ok [INFO] [stdout] test bam::tests::test_seek ... ok [INFO] [stdout] test bam::tests::test_set_qname2 ... ok [INFO] [stdout] test bam::tests::test_set_record ... ok [INFO] [stdout] test bam::tests::test_set_repeated ... ok [INFO] [stdout] test bam::tests::test_write ... ok [INFO] [stdout] test bam::record::tests::test_cigar_parse ... ok [INFO] [stdout] test bam::tests::test_read_cram ... ok [INFO] [stdout] test bam::tests::test_read_indexed_different_index_name ... ok [INFO] [stdout] test bam::ext::tests::test_reference_positions ... ok [INFO] [stdout] test bcf::tests::test_fails_on_non_existiant ... ok [INFO] [stdout] test bam::ext::tests::test_get_cigar_stats ... ok [INFO] [stdout] test bcf::tests::test_fails_on_bam ... ok [INFO] [stdout] test bcf::buffer::tests::test_buffer ... ok [INFO] [stdout] test bcf::tests::test_header_contigs ... ok [INFO] [stdout] test bcf::tests::test_genotypes ... ok [INFO] [stdout] test bcf::tests::test_header_records ... ok [INFO] [stdout] test bam::tests::test_set_qname ... ok [INFO] [stdout] test bam::ext::tests::test_infer_seq_len ... ok [INFO] [stdout] test bcf::tests::test_header_samples ... ok [INFO] [stderr] [W::vcf_parse] Contig '19' is not defined in the header. (Quick workaround: index the file with tabix.) [INFO] [stdout] test bcf::tests::test_missing ... ok [INFO] [stdout] test bcf::tests::test_header_ids ... ok [INFO] [stdout] test bcf::tests::test_header_info_types ... ok [INFO] [stdout] test bam::tests::test_write_cram ... ok [INFO] [stdout] test bcf::tests::test_read ... ok [INFO] [stdout] test bcf::tests::test_reader_set_threads ... ok [INFO] [stdout] test bam::ext::tests::test_reference_positions_full ... ok [INFO] [stdout] test bam::tests::test_write_compression ... ok [INFO] [stdout] test bcf::tests::test_fetch ... ok [INFO] [stdout] test bcf::tests::test_multi_string_info_tag ... ok [INFO] [stdout] test bcf::tests::test_multi_string_info_tag_number_a ... ok [INFO] [stderr] [E::hts_open_format] Failed to open file "http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/phase3/data/HG00096/exome_alignment/HG00096.chrom11.ILLUMINA.bwa.GBR.exome.20120522.bam" : Destination address required [INFO] [stdout] test bcf::tests::test_strings ... ok [INFO] [stdout] test bcf::tests::test_remove_headers ... ok [INFO] [stdout] test tbx::tests::bed_basic ... ok [INFO] [stdout] test bcf::tests::test_synced_reader_fetch ... ok [INFO] [stdout] test tbx::tests::bed_fetch_from_chr1_read_api ... ok [INFO] [stdout] test bcf::tests::test_svlen ... ok [INFO] [stdout] test tbx::tests::test_fails_on_bam ... ok [INFO] [stdout] test bcf::tests::test_synced_reader ... ok [INFO] [stdout] test tbx::tests::test_fails_on_vcf ... ok [INFO] [stdout] test tbx::tests::bed_fetch_from_chr1_iterator_api ... ok [INFO] [stdout] test bcf::tests::test_write ... ok [INFO] [stdout] test tbx::tests::test_fails_on_non_existiant ... ok [INFO] [stdout] test bcf::tests::test_write_various ... ok [INFO] [stdout] test bcf::tests::test_remove_alleles ... ok [INFO] [stdout] test bam::tests::test_idx_pileup ... ok [INFO] [stdout] test bcf::tests::test_writer_set_threads ... ok [INFO] [stdout] test bam::ext::tests::test_aligned_pairs_full ... ok [INFO] [stdout] test bam::index::tests::test_index_build ... FAILED [INFO] [stdout] test bam::tests::test_sam_writer_example ... FAILED [INFO] [stdout] test bam::pileup::tests::test_max_pileup_to_high ... ok [INFO] [stdout] test bam::tests::test_http_connect ... FAILED [INFO] [stdout] test bam::tests::test_write_threaded ... ok [INFO] [stdout] [INFO] [stdout] failures: [INFO] [stdout] [INFO] [stdout] ---- bam::index::tests::test_index_build stdout ---- [INFO] [stdout] thread 'bam::index::tests::test_index_build' panicked at 'called `Result::unwrap()` on an `Err` value: WriteIndex', src/bam/index.rs:72:9 [INFO] [stdout] stack backtrace: [INFO] [stdout] 0: 0x5573182e48b5 - backtrace::backtrace::libunwind::trace::ha215bbf14e328799 [INFO] [stdout] at /cargo/registry/src/github.com-1ecc6299db9ec823/backtrace-0.3.46/src/backtrace/libunwind.rs:86 [INFO] [stdout] 1: 0x5573182e48b5 - backtrace::backtrace::trace_unsynchronized::h3384b099b135857a [INFO] [stdout] at /cargo/registry/src/github.com-1ecc6299db9ec823/backtrace-0.3.46/src/backtrace/mod.rs:66 [INFO] [stdout] 2: 0x5573182e48b5 - std::sys_common::backtrace::_print_fmt::hfec93740f7294682 [INFO] [stdout] at src/libstd/sys_common/backtrace.rs:78 [INFO] [stdout] 3: 0x5573182e48b5 - ::fmt::h5fe20777f4174074 [INFO] [stdout] at src/libstd/sys_common/backtrace.rs:59 [INFO] [stdout] 4: 0x55731830dddc - core::fmt::write::he14c3177144df275 [INFO] [stdout] at src/libcore/fmt/mod.rs:1076 [INFO] [stdout] 5: 0x557317db1415 - std::io::Write::write_fmt::ha866504c9998fe5e [INFO] [stdout] at /rustc/d3fb005a39e62501b8b0b356166e515ae24e2e54/src/libstd/io/mod.rs:1537 [INFO] [stdout] 6: 0x5573182ddcb1 - std::io::impls::>::write_fmt::h8f0a2af895559593 [INFO] [stdout] at src/libstd/io/impls.rs:176 [INFO] [stdout] 7: 0x5573182e7640 - std::sys_common::backtrace::_print::h9cfa4c87526ba064 [INFO] [stdout] at src/libstd/sys_common/backtrace.rs:62 [INFO] [stdout] 8: 0x5573182e7640 - std::sys_common::backtrace::print::h94936584848b3272 [INFO] [stdout] at src/libstd/sys_common/backtrace.rs:49 [INFO] [stdout] 9: 0x5573182e7640 - std::panicking::default_hook::{{closure}}::h733b20cc9b496e46 [INFO] [stdout] at src/libstd/panicking.rs:198 [INFO] [stdout] 10: 0x5573182e733a - std::panicking::default_hook::h556d8cff6c12a651 [INFO] [stdout] at src/libstd/panicking.rs:215 [INFO] [stdout] 11: 0x5573182e7c77 - std::panicking::rust_panic_with_hook::ha0c7ca5b39baa9d5 [INFO] [stdout] at src/libstd/panicking.rs:486 [INFO] [stdout] 12: 0x5573182e787b - rust_begin_unwind [INFO] [stdout] at src/libstd/panicking.rs:388 [INFO] [stdout] 13: 0x55731830c771 - core::panicking::panic_fmt::h106d7128cbbc7cd2 [INFO] [stdout] at src/libcore/panicking.rs:101 [INFO] [stdout] 14: 0x55731830c593 - core::option::expect_none_failed::hfcafefc70a7975bb [INFO] [stdout] at src/libcore/option.rs:1272 [INFO] [stdout] 15: 0x557317d546ba - core::result::Result::unwrap::hfebbdccedc9ed489 [INFO] [stdout] at /rustc/d3fb005a39e62501b8b0b356166e515ae24e2e54/src/libcore/result.rs:1005 [INFO] [stdout] 16: 0x557317d5a519 - rust_htslib::bam::index::tests::test_index_build::h32fd7f66f33a74ab [INFO] [stdout] at src/bam/index.rs:72 [INFO] [stdout] 17: 0x557317d5a44a - rust_htslib::bam::index::tests::test_index_build::{{closure}}::h1f96c64aa7cf6b9e [INFO] [stdout] at src/bam/index.rs:67 [INFO] [stdout] 18: 0x557317d000ae - core::ops::function::FnOnce::call_once::h27f47ebe44f53e25 [INFO] [stdout] at /rustc/d3fb005a39e62501b8b0b356166e515ae24e2e54/src/libcore/ops/function.rs:232 [INFO] [stdout] 19: 0x557317dd8602 - as core::ops::function::FnOnce>::call_once::h1efcc6525b6aa145 [INFO] [stdout] at /rustc/d3fb005a39e62501b8b0b356166e515ae24e2e54/src/liballoc/boxed.rs:1076 [INFO] [stdout] 20: 0x557317dd8602 - as core::ops::function::FnOnce<()>>::call_once::hafd7ae2f3c23f399 [INFO] [stdout] at /rustc/d3fb005a39e62501b8b0b356166e515ae24e2e54/src/libstd/panic.rs:318 [INFO] [stdout] 21: 0x557317dd8602 - std::panicking::try::do_call::h83baf26f5fc8b0a5 [INFO] [stdout] at /rustc/d3fb005a39e62501b8b0b356166e515ae24e2e54/src/libstd/panicking.rs:297 [INFO] [stdout] 22: 0x557317dd8602 - std::panicking::try::h8d28a678b90bb6ac [INFO] [stdout] at /rustc/d3fb005a39e62501b8b0b356166e515ae24e2e54/src/libstd/panicking.rs:274 [INFO] [stdout] 23: 0x557317dd8602 - std::panic::catch_unwind::h20734e8710644f59 [INFO] [stdout] at /rustc/d3fb005a39e62501b8b0b356166e515ae24e2e54/src/libstd/panic.rs:394 [INFO] [stdout] 24: 0x557317dd8602 - test::run_test_in_process::h2c1fb2dd0c9013bb [INFO] [stdout] at src/libtest/lib.rs:541 [INFO] [stdout] 25: 0x557317dd8602 - test::run_test::run_test_inner::{{closure}}::h7c58b7aefdb9adf3 [INFO] [stdout] at src/libtest/lib.rs:450 [INFO] [stdout] 26: 0x557317db08d6 - std::sys_common::backtrace::__rust_begin_short_backtrace::h498f21fd16bdff05 [INFO] [stdout] at /rustc/d3fb005a39e62501b8b0b356166e515ae24e2e54/src/libstd/sys_common/backtrace.rs:130 [INFO] [stdout] 27: 0x557317db5c15 - std::thread::Builder::spawn_unchecked::{{closure}}::{{closure}}::hb35336a0a0430e6d [INFO] [stdout] at /rustc/d3fb005a39e62501b8b0b356166e515ae24e2e54/src/libstd/thread/mod.rs:475 [INFO] [stdout] 28: 0x557317db5c15 - as core::ops::function::FnOnce<()>>::call_once::h8569a86268e08ad1 [INFO] [stdout] at /rustc/d3fb005a39e62501b8b0b356166e515ae24e2e54/src/libstd/panic.rs:318 [INFO] [stdout] 29: 0x557317db5c15 - std::panicking::try::do_call::hcc5472a0f1ff31ac [INFO] [stdout] at /rustc/d3fb005a39e62501b8b0b356166e515ae24e2e54/src/libstd/panicking.rs:297 [INFO] [stdout] 30: 0x557317db5c15 - std::panicking::try::h774b0c4fd770945c [INFO] [stdout] at /rustc/d3fb005a39e62501b8b0b356166e515ae24e2e54/src/libstd/panicking.rs:274 [INFO] [stdout] 31: 0x557317db5c15 - std::panic::catch_unwind::hfaf7c6beb53320e7 [INFO] [stdout] at /rustc/d3fb005a39e62501b8b0b356166e515ae24e2e54/src/libstd/panic.rs:394 [INFO] [stdout] 32: 0x557317db5c15 - std::thread::Builder::spawn_unchecked::{{closure}}::h481343a824704446 [INFO] [stdout] at /rustc/d3fb005a39e62501b8b0b356166e515ae24e2e54/src/libstd/thread/mod.rs:474 [INFO] [stdout] 33: 0x557317db5c15 - core::ops::function::FnOnce::call_once{{vtable.shim}}::h9dcbc7fc2c4c6c48 [INFO] [stdout] at /rustc/d3fb005a39e62501b8b0b356166e515ae24e2e54/src/libcore/ops/function.rs:232 [INFO] [stdout] 34: 0x5573182ee8aa - as core::ops::function::FnOnce>::call_once::hf311c88f1fadb9b8 [INFO] [stdout] at /rustc/d3fb005a39e62501b8b0b356166e515ae24e2e54/src/liballoc/boxed.rs:1076 [INFO] [stdout] 35: 0x5573182ee8aa - as core::ops::function::FnOnce>::call_once::h8cfb7235b81393ef [INFO] [stdout] at /rustc/d3fb005a39e62501b8b0b356166e515ae24e2e54/src/liballoc/boxed.rs:1076 [INFO] [stdout] 36: 0x5573182ee8aa - std::sys::unix::thread::Thread::new::thread_start::hf745c8cf29a89648 [INFO] [stdout] at src/libstd/sys/unix/thread.rs:87 [INFO] [stdout] 37: 0x7f0583524609 - start_thread [INFO] [stdout] 38: 0x7f0583430103 - __clone [INFO] [stdout] 39: 0x0 - [INFO] [stdout] [INFO] [stdout] ---- bam::tests::test_sam_writer_example stdout ---- [INFO] [stdout] thread 'bam::tests::test_sam_writer_example' panicked at 'called `Result::unwrap()` on an `Err` value: Open { target: "./test/bam2sam_out.sam" }', src/bam/mod.rs:1730:34 [INFO] [stdout] stack backtrace: [INFO] [stdout] 0: 0x5573182e48b5 - backtrace::backtrace::libunwind::trace::ha215bbf14e328799 [INFO] [stdout] at /cargo/registry/src/github.com-1ecc6299db9ec823/backtrace-0.3.46/src/backtrace/libunwind.rs:86 [INFO] [stdout] 1: 0x5573182e48b5 - backtrace::backtrace::trace_unsynchronized::h3384b099b135857a [INFO] [stdout] at /cargo/registry/src/github.com-1ecc6299db9ec823/backtrace-0.3.46/src/backtrace/mod.rs:66 [INFO] [stdout] 2: 0x5573182e48b5 - std::sys_common::backtrace::_print_fmt::hfec93740f7294682 [INFO] [stdout] at src/libstd/sys_common/backtrace.rs:78 [INFO] [stdout] 3: 0x5573182e48b5 - ::fmt::h5fe20777f4174074 [INFO] [stdout] at src/libstd/sys_common/backtrace.rs:59 [INFO] [stdout] 4: 0x55731830dddc - core::fmt::write::he14c3177144df275 [INFO] [stdout] at src/libcore/fmt/mod.rs:1076 [INFO] [stdout] 5: 0x557317db1415 - std::io::Write::write_fmt::ha866504c9998fe5e [INFO] [stdout] at /rustc/d3fb005a39e62501b8b0b356166e515ae24e2e54/src/libstd/io/mod.rs:1537 [INFO] [stdout] 6: 0x5573182ddcb1 - std::io::impls::>::write_fmt::h8f0a2af895559593 [INFO] [stdout] at src/libstd/io/impls.rs:176 [INFO] [stdout] 7: 0x5573182e7640 - std::sys_common::backtrace::_print::h9cfa4c87526ba064 [INFO] [stdout] at src/libstd/sys_common/backtrace.rs:62 [INFO] [stdout] 8: 0x5573182e7640 - std::sys_common::backtrace::print::h94936584848b3272 [INFO] [stdout] at src/libstd/sys_common/backtrace.rs:49 [INFO] [stdout] 9: 0x5573182e7640 - std::panicking::default_hook::{{closure}}::h733b20cc9b496e46 [INFO] [stdout] at src/libstd/panicking.rs:198 [INFO] [stdout] 10: 0x5573182e733a - std::panicking::default_hook::h556d8cff6c12a651 [INFO] [stdout] at src/libstd/panicking.rs:215 [INFO] [stdout] 11: 0x5573182e7c77 - std::panicking::rust_panic_with_hook::ha0c7ca5b39baa9d5 [INFO] [stdout] at src/libstd/panicking.rs:486 [INFO] [stdout] 12: 0x5573182e787b - rust_begin_unwind [INFO] [stdout] at src/libstd/panicking.rs:388 [INFO] [stdout] 13: 0x55731830c771 - core::panicking::panic_fmt::h106d7128cbbc7cd2 [INFO] [stdout] at src/libcore/panicking.rs:101 [INFO] [stdout] 14: 0x55731830c593 - core::option::expect_none_failed::hfcafefc70a7975bb [INFO] [stdout] at src/libcore/option.rs:1272 [INFO] [stdout] 15: 0x557317d532a3 - core::result::Result::unwrap::h2219d2d411a4c293 [INFO] [stdout] at /rustc/d3fb005a39e62501b8b0b356166e515ae24e2e54/src/libcore/result.rs:1005 [INFO] [stdout] 16: 0x557317ce4431 - rust_htslib::bam::tests::test_sam_writer_example::from_bam_with_filter::h50a3fabe5043b1b7 [INFO] [stdout] at src/bam/mod.rs:1730 [INFO] [stdout] 17: 0x557317ce3e7d - rust_htslib::bam::tests::test_sam_writer_example::haba5a7791fb90f7f [INFO] [stdout] at src/bam/mod.rs:1753 [INFO] [stdout] 18: 0x557317ce3dfa - rust_htslib::bam::tests::test_sam_writer_example::{{closure}}::hed2f0443a634eb09 [INFO] [stdout] at src/bam/mod.rs:1723 [INFO] [stdout] 19: 0x557317d00d6e - core::ops::function::FnOnce::call_once::he52eaac67fc39956 [INFO] [stdout] at /rustc/d3fb005a39e62501b8b0b356166e515ae24e2e54/src/libcore/ops/function.rs:232 [INFO] [stdout] 20: 0x557317dd8602 - as core::ops::function::FnOnce>::call_once::h1efcc6525b6aa145 [INFO] [stdout] at /rustc/d3fb005a39e62501b8b0b356166e515ae24e2e54/src/liballoc/boxed.rs:1076 [INFO] [stdout] 21: 0x557317dd8602 - as core::ops::function::FnOnce<()>>::call_once::hafd7ae2f3c23f399 [INFO] [stdout] at /rustc/d3fb005a39e62501b8b0b356166e515ae24e2e54/src/libstd/panic.rs:318 [INFO] [stdout] 22: 0x557317dd8602 - std::panicking::try::do_call::h83baf26f5fc8b0a5 [INFO] [stdout] at /rustc/d3fb005a39e62501b8b0b356166e515ae24e2e54/src/libstd/panicking.rs:297 [INFO] [stdout] 23: 0x557317dd8602 - std::panicking::try::h8d28a678b90bb6ac [INFO] [stdout] at /rustc/d3fb005a39e62501b8b0b356166e515ae24e2e54/src/libstd/panicking.rs:274 [INFO] [stdout] 24: 0x557317dd8602 - std::panic::catch_unwind::h20734e8710644f59 [INFO] [stdout] at /rustc/d3fb005a39e62501b8b0b356166e515ae24e2e54/src/libstd/panic.rs:394 [INFO] [stdout] 25: 0x557317dd8602 - test::run_test_in_process::h2c1fb2dd0c9013bb [INFO] [stdout] at src/libtest/lib.rs:541 [INFO] [stdout] 26: 0x557317dd8602 - test::run_test::run_test_inner::{{closure}}::h7c58b7aefdb9adf3 [INFO] [stdout] at src/libtest/lib.rs:450 [INFO] [stdout] 27: 0x557317db08d6 - std::sys_common::backtrace::__rust_begin_short_backtrace::h498f21fd16bdff05 [INFO] [stdout] at /rustc/d3fb005a39e62501b8b0b356166e515ae24e2e54/src/libstd/sys_common/backtrace.rs:130 [INFO] [stdout] 28: 0x557317db5c15 - std::thread::Builder::spawn_unchecked::{{closure}}::{{closure}}::hb35336a0a0430e6d [INFO] [stdout] at /rustc/d3fb005a39e62501b8b0b356166e515ae24e2e54/src/libstd/thread/mod.rs:475 [INFO] [stdout] 29: 0x557317db5c15 - as core::ops::function::FnOnce<()>>::call_once::h8569a86268e08ad1 [INFO] [stdout] at /rustc/d3fb005a39e62501b8b0b356166e515ae24e2e54/src/libstd/panic.rs:318 [INFO] [stdout] 30: 0x557317db5c15 - std::panicking::try::do_call::hcc5472a0f1ff31ac [INFO] [stdout] at /rustc/d3fb005a39e62501b8b0b356166e515ae24e2e54/src/libstd/panicking.rs:297 [INFO] [stdout] 31: 0x557317db5c15 - std::panicking::try::h774b0c4fd770945c [INFO] [stdout] at /rustc/d3fb005a39e62501b8b0b356166e515ae24e2e54/src/libstd/panicking.rs:274 [INFO] [stdout] 32: 0x557317db5c15 - std::panic::catch_unwind::hfaf7c6beb53320e7 [INFO] [stdout] at /rustc/d3fb005a39e62501b8b0b356166e515ae24e2e54/src/libstd/panic.rs:394 [INFO] [stdout] 33: 0x557317db5c15 - std::thread::Builder::spawn_unchecked::{{closure}}::h481343a824704446 [INFO] [stdout] at /rustc/d3fb005a39e62501b8b0b356166e515ae24e2e54/src/libstd/thread/mod.rs:474 [INFO] [stdout] 34: 0x557317db5c15 - core::ops::function::FnOnce::call_once{{vtable.shim}}::h9dcbc7fc2c4c6c48 [INFO] [stdout] at /rustc/d3fb005a39e62501b8b0b356166e515ae24e2e54/src/libcore/ops/function.rs:232 [INFO] [stdout] 35: 0x5573182ee8aa - as core::ops::function::FnOnce>::call_once::hf311c88f1fadb9b8 [INFO] [stdout] at /rustc/d3fb005a39e62501b8b0b356166e515ae24e2e54/src/liballoc/boxed.rs:1076 [INFO] [stdout] 36: 0x5573182ee8aa - as core::ops::function::FnOnce>::call_once::h8cfb7235b81393ef [INFO] [stdout] at /rustc/d3fb005a39e62501b8b0b356166e515ae24e2e54/src/liballoc/boxed.rs:1076 [INFO] [stdout] 37: 0x5573182ee8aa - std::sys::unix::thread::Thread::new::thread_start::hf745c8cf29a89648 [INFO] [stdout] at src/libstd/sys/unix/thread.rs:87 [INFO] [stdout] 38: 0x7f0583524609 - start_thread [INFO] [stdout] 39: 0x7f0583430103 - __clone [INFO] [stdout] 40: 0x0 - [INFO] [stdout] [INFO] [stdout] ---- bam::tests::test_http_connect stdout ---- [INFO] [stdout] Err( [INFO] [stdout] Open { [INFO] [stdout] target: "http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/phase3/data/HG00096/exome_alignment/HG00096.chrom11.ILLUMINA.bwa.GBR.exome.20120522.bam", [INFO] [stdout] }, [INFO] [stdout] ) [INFO] [stdout] thread 'bam::tests::test_http_connect' panicked at 'called `Result::unwrap()` on an `Err` value: Open { target: "http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/phase3/data/HG00096/exome_alignment/HG00096.chrom11.ILLUMINA.bwa.GBR.exome.20120522.bam" }', src/bam/mod.rs:1775:17 [INFO] [stdout] stack backtrace: [INFO] [stdout] 0: 0x5573182e48b5 - backtrace::backtrace::libunwind::trace::ha215bbf14e328799 [INFO] [stdout] at /cargo/registry/src/github.com-1ecc6299db9ec823/backtrace-0.3.46/src/backtrace/libunwind.rs:86 [INFO] [stdout] 1: 0x5573182e48b5 - backtrace::backtrace::trace_unsynchronized::h3384b099b135857a [INFO] [stdout] at /cargo/registry/src/github.com-1ecc6299db9ec823/backtrace-0.3.46/src/backtrace/mod.rs:66 [INFO] [stdout] 2: 0x5573182e48b5 - std::sys_common::backtrace::_print_fmt::hfec93740f7294682 [INFO] [stdout] at src/libstd/sys_common/backtrace.rs:78 [INFO] [stdout] 3: 0x5573182e48b5 - ::fmt::h5fe20777f4174074 [INFO] [stdout] at src/libstd/sys_common/backtrace.rs:59 [INFO] [stdout] 4: 0x55731830dddc - core::fmt::write::he14c3177144df275 [INFO] [stdout] at src/libcore/fmt/mod.rs:1076 [INFO] [stdout] 5: 0x557317db1415 - std::io::Write::write_fmt::ha866504c9998fe5e [INFO] [stdout] at /rustc/d3fb005a39e62501b8b0b356166e515ae24e2e54/src/libstd/io/mod.rs:1537 [INFO] [stdout] 6: 0x5573182ddcb1 - std::io::impls::>::write_fmt::h8f0a2af895559593 [INFO] [stdout] at src/libstd/io/impls.rs:176 [INFO] [stdout] 7: 0x5573182e7640 - std::sys_common::backtrace::_print::h9cfa4c87526ba064 [INFO] [stdout] at src/libstd/sys_common/backtrace.rs:62 [INFO] [stdout] 8: 0x5573182e7640 - std::sys_common::backtrace::print::h94936584848b3272 [INFO] [stdout] at src/libstd/sys_common/backtrace.rs:49 [INFO] [stdout] 9: 0x5573182e7640 - std::panicking::default_hook::{{closure}}::h733b20cc9b496e46 [INFO] [stdout] at src/libstd/panicking.rs:198 [INFO] [stdout] 10: 0x5573182e733a - std::panicking::default_hook::h556d8cff6c12a651 [INFO] [stdout] at src/libstd/panicking.rs:215 [INFO] [stdout] 11: 0x5573182e7c77 - std::panicking::rust_panic_with_hook::ha0c7ca5b39baa9d5 [INFO] [stdout] at src/libstd/panicking.rs:486 [INFO] [stdout] 12: 0x5573182e787b - rust_begin_unwind [INFO] [stdout] at src/libstd/panicking.rs:388 [INFO] [stdout] 13: 0x55731830c771 - core::panicking::panic_fmt::h106d7128cbbc7cd2 [INFO] [stdout] at src/libcore/panicking.rs:101 [INFO] [stdout] 14: 0x55731830c593 - core::option::expect_none_failed::hfcafefc70a7975bb [INFO] [stdout] at src/libcore/option.rs:1272 [INFO] [stdout] 15: 0x557317d531f3 - core::result::Result::unwrap::h018e7fe406ccff23 [INFO] [stdout] at /rustc/d3fb005a39e62501b8b0b356166e515ae24e2e54/src/libcore/result.rs:1005 [INFO] [stdout] 16: 0x557317ce4a9f - rust_htslib::bam::tests::test_http_connect::haaf6e10606489260 [INFO] [stdout] at src/bam/mod.rs:1775 [INFO] [stdout] 17: 0x557317ce490a - rust_htslib::bam::tests::test_http_connect::{{closure}}::h609dec05eac88340 [INFO] [stdout] at src/bam/mod.rs:1770 [INFO] [stdout] 18: 0x557317d00b7e - core::ops::function::FnOnce::call_once::hca07402e21c9f550 [INFO] [stdout] at /rustc/d3fb005a39e62501b8b0b356166e515ae24e2e54/src/libcore/ops/function.rs:232 [INFO] [stdout] 19: 0x557317dd8602 - as core::ops::function::FnOnce>::call_once::h1efcc6525b6aa145 [INFO] [stdout] at /rustc/d3fb005a39e62501b8b0b356166e515ae24e2e54/src/liballoc/boxed.rs:1076 [INFO] [stdout] 20: 0x557317dd8602 - as core::ops::function::FnOnce<()>>::call_once::hafd7ae2f3c23f399 [INFO] [stdout] at /rustc/d3fb005a39e62501b8b0b356166e515ae24e2e54/src/libstd/panic.rs:318 [INFO] [stdout] 21: 0x557317dd8602 - std::panicking::try::do_call::h83baf26f5fc8b0a5 [INFO] [stdout] at /rustc/d3fb005a39e62501b8b0b356166e515ae24e2e54/src/libstd/panicking.rs:297 [INFO] [stdout] 22: 0x557317dd8602 - std::panicking::try::h8d28a678b90bb6ac [INFO] [stdout] at /rustc/d3fb005a39e62501b8b0b356166e515ae24e2e54/src/libstd/panicking.rs:274 [INFO] [stdout] 23: 0x557317dd8602 - std::panic::catch_unwind::h20734e8710644f59 [INFO] [stdout] at /rustc/d3fb005a39e62501b8b0b356166e515ae24e2e54/src/libstd/panic.rs:394 [INFO] [stdout] 24: 0x557317dd8602 - test::run_test_in_process::h2c1fb2dd0c9013bb [INFO] [stdout] at src/libtest/lib.rs:541 [INFO] [stdout] 25: 0x557317dd8602 - test::run_test::run_test_inner::{{closure}}::h7c58b7aefdb9adf3 [INFO] [stdout] at src/libtest/lib.rs:450 [INFO] [stdout] 26: 0x557317db08d6 - std::sys_common::backtrace::__rust_begin_short_backtrace::h498f21fd16bdff05 [INFO] [stdout] at /rustc/d3fb005a39e62501b8b0b356166e515ae24e2e54/src/libstd/sys_common/backtrace.rs:130 [INFO] [stdout] 27: 0x557317db5c15 - std::thread::Builder::spawn_unchecked::{{closure}}::{{closure}}::hb35336a0a0430e6d [INFO] [stdout] at /rustc/d3fb005a39e62501b8b0b356166e515ae24e2e54/src/libstd/thread/mod.rs:475 [INFO] [stdout] 28: 0x557317db5c15 - as core::ops::function::FnOnce<()>>::call_once::h8569a86268e08ad1 [INFO] [stdout] at /rustc/d3fb005a39e62501b8b0b356166e515ae24e2e54/src/libstd/panic.rs:318 [INFO] [stdout] 29: 0x557317db5c15 - std::panicking::try::do_call::hcc5472a0f1ff31ac [INFO] [stdout] at /rustc/d3fb005a39e62501b8b0b356166e515ae24e2e54/src/libstd/panicking.rs:297 [INFO] [stdout] 30: 0x557317db5c15 - std::panicking::try::h774b0c4fd770945c [INFO] [stdout] at /rustc/d3fb005a39e62501b8b0b356166e515ae24e2e54/src/libstd/panicking.rs:274 [INFO] [stdout] 31: 0x557317db5c15 - std::panic::catch_unwind::hfaf7c6beb53320e7 [INFO] [stdout] at /rustc/d3fb005a39e62501b8b0b356166e515ae24e2e54/src/libstd/panic.rs:394 [INFO] [stdout] 32: 0x557317db5c15 - std::thread::Builder::spawn_unchecked::{{closure}}::h481343a824704446 [INFO] [stdout] at /rustc/d3fb005a39e62501b8b0b356166e515ae24e2e54/src/libstd/thread/mod.rs:474 [INFO] [stdout] 33: 0x557317db5c15 - core::ops::function::FnOnce::call_once{{vtable.shim}}::h9dcbc7fc2c4c6c48 [INFO] [stdout] at /rustc/d3fb005a39e62501b8b0b356166e515ae24e2e54/src/libcore/ops/function.rs:232 [INFO] [stdout] 34: 0x5573182ee8aa - as core::ops::function::FnOnce>::call_once::hf311c88f1fadb9b8 [INFO] [stdout] at /rustc/d3fb005a39e62501b8b0b356166e515ae24e2e54/src/liballoc/boxed.rs:1076 [INFO] [stdout] 35: 0x5573182ee8aa - as core::ops::function::FnOnce>::call_once::h8cfb7235b81393ef [INFO] [stdout] at /rustc/d3fb005a39e62501b8b0b356166e515ae24e2e54/src/liballoc/boxed.rs:1076 [INFO] [stdout] 36: 0x5573182ee8aa - std::sys::unix::thread::Thread::new::thread_start::hf745c8cf29a89648 [INFO] [stdout] at src/libstd/sys/unix/thread.rs:87 [INFO] [stdout] 37: 0x7f0583524609 - start_thread [INFO] [stdout] 38: 0x7f0583430103 - __clone [INFO] [stdout] 39: 0x0 - [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] failures: [INFO] [stdout] bam::index::tests::test_index_build [INFO] [stdout] bam::tests::test_http_connect [INFO] [stdout] bam::tests::test_sam_writer_example [INFO] [stdout] [INFO] [stdout] test result: FAILED. 72 passed; 3 failed; 0 ignored; 0 measured; 0 filtered out [INFO] [stdout] [INFO] [stderr] error: test failed, to rerun pass '--lib' [INFO] running `Command { std: "docker" "inspect" "b5d9f2c222f53c593c6aaeb45f8db6c2576c193105370e97bd64efe779ae51ae", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "b5d9f2c222f53c593c6aaeb45f8db6c2576c193105370e97bd64efe779ae51ae", kill_on_drop: false }` [INFO] [stdout] b5d9f2c222f53c593c6aaeb45f8db6c2576c193105370e97bd64efe779ae51ae