[INFO] crate rnafamprob 0.1.0 is already in cache [INFO] testing rnafamprob-0.1.0 against 1.45.2 for beta-1.46-1 [INFO] extracting crate rnafamprob 0.1.0 into /workspace/builds/worker-5/source [INFO] validating manifest of crates.io crate rnafamprob 0.1.0 on toolchain 1.45.2 [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+1.45.2" "read-manifest" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] started tweaking crates.io crate rnafamprob 0.1.0 [INFO] finished tweaking crates.io crate rnafamprob 0.1.0 [INFO] tweaked toml for crates.io crate rnafamprob 0.1.0 written to /workspace/builds/worker-5/source/Cargo.toml [INFO] crate crates.io crate rnafamprob 0.1.0 already has a lockfile, it will not be regenerated [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+1.45.2" "fetch" "--locked" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=0" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env@sha256:a636fd89d022f18117e1dc8fb37a0a009933cdbbe082814857f0e2024962d47c" "/opt/rustwide/cargo-home/bin/cargo" "+1.45.2" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 9f8f912cf5321b28fec003b287709f1f2413998ab89911f49a43a4b6b4939454 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "9f8f912cf5321b28fec003b287709f1f2413998ab89911f49a43a4b6b4939454", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "9f8f912cf5321b28fec003b287709f1f2413998ab89911f49a43a4b6b4939454", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "9f8f912cf5321b28fec003b287709f1f2413998ab89911f49a43a4b6b4939454", kill_on_drop: false }` [INFO] [stdout] 9f8f912cf5321b28fec003b287709f1f2413998ab89911f49a43a4b6b4939454 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=0" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env@sha256:a636fd89d022f18117e1dc8fb37a0a009933cdbbe082814857f0e2024962d47c" "/opt/rustwide/cargo-home/bin/cargo" "+1.45.2" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 9900f4a54a8420dbff50602592a8f14def125d7398e73030bf18efabca823343 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "9900f4a54a8420dbff50602592a8f14def125d7398e73030bf18efabca823343", kill_on_drop: false }` [INFO] [stderr] Compiling libc v0.2.65 [INFO] [stderr] Compiling syn v1.0.5 [INFO] [stderr] Compiling memchr v2.2.1 [INFO] [stderr] Compiling serde v1.0.101 [INFO] [stderr] Compiling semver v0.1.20 [INFO] [stderr] Compiling matrixmultiply v0.1.15 [INFO] [stderr] Compiling bv v0.7.4 [INFO] [stderr] Compiling rawpointer v0.1.0 [INFO] [stderr] Compiling ucd-util v0.1.5 [INFO] [stderr] Compiling ndarray v0.9.1 [INFO] [stderr] Compiling unicode-width v0.1.6 [INFO] [stderr] Compiling bytecount v0.3.2 [INFO] [stderr] Compiling custom_derive v0.1.7 [INFO] [stderr] Compiling approx v0.1.1 [INFO] [stderr] Compiling num-traits v0.2.8 [INFO] [stderr] Compiling num-integer v0.1.41 [INFO] [stderr] Compiling itertools v0.6.5 [INFO] [stderr] Compiling unreachable v1.0.0 [INFO] [stderr] Compiling bio-seq-algos v0.1.12 [INFO] [stderr] Compiling getopts v0.2.21 [INFO] [stderr] Compiling regex-automata v0.1.8 [INFO] [stderr] Compiling fxhash v0.2.1 [INFO] [stderr] Compiling regex-syntax v0.5.6 [INFO] [stderr] Compiling rustc_version v0.1.7 [INFO] [stderr] Compiling rna-ss-params v0.1.13 [INFO] [stderr] Compiling newtype_derive v0.1.6 [INFO] [stderr] Compiling num_cpus v1.10.1 [INFO] [stderr] Compiling time v0.1.42 [INFO] [stderr] Compiling aho-corasick v0.6.10 [INFO] [stderr] Compiling csv-core v0.1.6 [INFO] [stderr] Compiling num-traits v0.1.43 [INFO] [stderr] Compiling num-complex v0.1.43 [INFO] [stderr] Compiling itertools-num v0.1.3 [INFO] [stderr] Compiling ordered-float v0.5.2 [INFO] [stderr] Compiling regex v0.2.11 [INFO] [stderr] Compiling serde_derive v1.0.101 [INFO] [stderr] Compiling bstr v0.2.8 [INFO] [stderr] Compiling multimap v0.4.0 [INFO] [stderr] Compiling vec_map v0.8.1 [INFO] [stderr] Compiling csv v1.1.1 [INFO] [stderr] Compiling bio v0.20.3 [INFO] [stderr] Compiling rna-algos v0.1.10 [INFO] [stderr] Compiling rnafamprob v0.1.0 (/opt/rustwide/workdir) [INFO] [stdout] warning: unnecessary trailing semicolon [INFO] [stdout] --> src/lib.rs:1279:152 [INFO] [stdout] | [INFO] [stdout] 1279 | let ep_of_term_4_log_pf = log_sta_ppf_mat_sets.log_ppf_mats_on_sas.log_ppf_mat_4_gaps_2[&pos_pair_2] + sta_fe_params.extending_gap_penalty;; [INFO] [stdout] | ^ help: remove this semicolon [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(redundant_semicolons)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated item 'std::sync::ONCE_INIT': the `new` function is now preferred [INFO] [stdout] --> src/utils.rs:26:1 [INFO] [stdout] | [INFO] [stdout] 26 | / lazy_static! { [INFO] [stdout] 27 | | pub static ref RIBOSUM_85_60_BA_SCORE_MAT: BaScoreMat = { [INFO] [stdout] 28 | | [ [INFO] [stdout] 29 | | (AA, 2.22), (AC, -1.86), (AG, -1.46), (AU, -1.39), [INFO] [stdout] ... | [INFO] [stdout] 44 | | }; [INFO] [stdout] 45 | | } [INFO] [stdout] | |_^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(deprecated)]` on by default [INFO] [stdout] = note: this warning originates in a macro (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated item 'std::sync::ONCE_INIT': the `new` function is now preferred [INFO] [stdout] --> src/utils.rs:26:1 [INFO] [stdout] | [INFO] [stdout] 26 | / lazy_static! { [INFO] [stdout] 27 | | pub static ref RIBOSUM_85_60_BA_SCORE_MAT: BaScoreMat = { [INFO] [stdout] 28 | | [ [INFO] [stdout] 29 | | (AA, 2.22), (AC, -1.86), (AG, -1.46), (AU, -1.39), [INFO] [stdout] ... | [INFO] [stdout] 44 | | }; [INFO] [stdout] 45 | | } [INFO] [stdout] | |_^ [INFO] [stdout] | [INFO] [stdout] = note: this warning originates in a macro (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated item 'std::sync::ONCE_INIT': the `new` function is now preferred [INFO] [stdout] --> src/utils.rs:26:1 [INFO] [stdout] | [INFO] [stdout] 26 | / lazy_static! { [INFO] [stdout] 27 | | pub static ref RIBOSUM_85_60_BA_SCORE_MAT: BaScoreMat = { [INFO] [stdout] 28 | | [ [INFO] [stdout] 29 | | (AA, 2.22), (AC, -1.86), (AG, -1.46), (AU, -1.39), [INFO] [stdout] ... | [INFO] [stdout] 44 | | }; [INFO] [stdout] 45 | | } [INFO] [stdout] | |_^ [INFO] [stdout] | [INFO] [stdout] = note: this warning originates in a macro (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated item 'std::sync::ONCE_INIT': the `new` function is now preferred [INFO] [stdout] --> src/utils.rs:26:1 [INFO] [stdout] | [INFO] [stdout] 26 | / lazy_static! { [INFO] [stdout] 27 | | pub static ref RIBOSUM_85_60_BA_SCORE_MAT: BaScoreMat = { [INFO] [stdout] 28 | | [ [INFO] [stdout] 29 | | (AA, 2.22), (AC, -1.86), (AG, -1.46), (AU, -1.39), [INFO] [stdout] ... | [INFO] [stdout] 44 | | }; [INFO] [stdout] 45 | | } [INFO] [stdout] | |_^ [INFO] [stdout] | [INFO] [stdout] = note: this warning originates in a macro (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 5 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 52.92s [INFO] running `Command { std: "docker" "inspect" "9900f4a54a8420dbff50602592a8f14def125d7398e73030bf18efabca823343", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "9900f4a54a8420dbff50602592a8f14def125d7398e73030bf18efabca823343", kill_on_drop: false }` [INFO] [stdout] 9900f4a54a8420dbff50602592a8f14def125d7398e73030bf18efabca823343 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=0" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env@sha256:a636fd89d022f18117e1dc8fb37a0a009933cdbbe082814857f0e2024962d47c" "/opt/rustwide/cargo-home/bin/cargo" "+1.45.2" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] f2634afd1411d5e1d9eda5ad0f8f361c5bbf8d50dfa4f4d221a91576b4d22aff [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "f2634afd1411d5e1d9eda5ad0f8f361c5bbf8d50dfa4f4d221a91576b4d22aff", kill_on_drop: false }` [INFO] [stderr] Compiling rnafamprob v0.1.0 (/opt/rustwide/workdir) [INFO] [stdout] warning: unnecessary trailing semicolon [INFO] [stdout] --> src/lib.rs:1279:152 [INFO] [stdout] | [INFO] [stdout] 1279 | let ep_of_term_4_log_pf = log_sta_ppf_mat_sets.log_ppf_mats_on_sas.log_ppf_mat_4_gaps_2[&pos_pair_2] + sta_fe_params.extending_gap_penalty;; [INFO] [stdout] | ^ help: remove this semicolon [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(redundant_semicolons)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated item 'std::sync::ONCE_INIT': the `new` function is now preferred [INFO] [stdout] --> src/utils.rs:26:1 [INFO] [stdout] | [INFO] [stdout] 26 | / lazy_static! { [INFO] [stdout] 27 | | pub static ref RIBOSUM_85_60_BA_SCORE_MAT: BaScoreMat = { [INFO] [stdout] 28 | | [ [INFO] [stdout] 29 | | (AA, 2.22), (AC, -1.86), (AG, -1.46), (AU, -1.39), [INFO] [stdout] ... | [INFO] [stdout] 44 | | }; [INFO] [stdout] 45 | | } [INFO] [stdout] | |_^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(deprecated)]` on by default [INFO] [stdout] = note: this warning originates in a macro (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated item 'std::sync::ONCE_INIT': the `new` function is now preferred [INFO] [stdout] --> src/utils.rs:26:1 [INFO] [stdout] | [INFO] [stdout] 26 | / lazy_static! { [INFO] [stdout] 27 | | pub static ref RIBOSUM_85_60_BA_SCORE_MAT: BaScoreMat = { [INFO] [stdout] 28 | | [ [INFO] [stdout] 29 | | (AA, 2.22), (AC, -1.86), (AG, -1.46), (AU, -1.39), [INFO] [stdout] ... | [INFO] [stdout] 44 | | }; [INFO] [stdout] 45 | | } [INFO] [stdout] | |_^ [INFO] [stdout] | [INFO] [stdout] = note: this warning originates in a macro (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated item 'std::sync::ONCE_INIT': the `new` function is now preferred [INFO] [stdout] --> src/utils.rs:26:1 [INFO] [stdout] | [INFO] [stdout] 26 | / lazy_static! { [INFO] [stdout] 27 | | pub static ref RIBOSUM_85_60_BA_SCORE_MAT: BaScoreMat = { [INFO] [stdout] 28 | | [ [INFO] [stdout] 29 | | (AA, 2.22), (AC, -1.86), (AG, -1.46), (AU, -1.39), [INFO] [stdout] ... | [INFO] [stdout] 44 | | }; [INFO] [stdout] 45 | | } [INFO] [stdout] | |_^ [INFO] [stdout] | [INFO] [stdout] = note: this warning originates in a macro (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated item 'std::sync::ONCE_INIT': the `new` function is now preferred [INFO] [stdout] --> src/utils.rs:26:1 [INFO] [stdout] | [INFO] [stdout] 26 | / lazy_static! { [INFO] [stdout] 27 | | pub static ref RIBOSUM_85_60_BA_SCORE_MAT: BaScoreMat = { [INFO] [stdout] 28 | | [ [INFO] [stdout] 29 | | (AA, 2.22), (AC, -1.86), (AG, -1.46), (AU, -1.39), [INFO] [stdout] ... | [INFO] [stdout] 44 | | }; [INFO] [stdout] 45 | | } [INFO] [stdout] | |_^ [INFO] [stdout] | [INFO] [stdout] = note: this warning originates in a macro (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 5 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unnecessary trailing semicolon [INFO] [stdout] --> src/lib.rs:1279:152 [INFO] [stdout] | [INFO] [stdout] 1279 | let ep_of_term_4_log_pf = log_sta_ppf_mat_sets.log_ppf_mats_on_sas.log_ppf_mat_4_gaps_2[&pos_pair_2] + sta_fe_params.extending_gap_penalty;; [INFO] [stdout] | ^ help: remove this semicolon [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(redundant_semicolons)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated item 'std::sync::ONCE_INIT': the `new` function is now preferred [INFO] [stdout] --> src/utils.rs:26:1 [INFO] [stdout] | [INFO] [stdout] 26 | / lazy_static! { [INFO] [stdout] 27 | | pub static ref RIBOSUM_85_60_BA_SCORE_MAT: BaScoreMat = { [INFO] [stdout] 28 | | [ [INFO] [stdout] 29 | | (AA, 2.22), (AC, -1.86), (AG, -1.46), (AU, -1.39), [INFO] [stdout] ... | [INFO] [stdout] 44 | | }; [INFO] [stdout] 45 | | } [INFO] [stdout] | |_^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(deprecated)]` on by default [INFO] [stdout] = note: this warning originates in a macro (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated item 'std::sync::ONCE_INIT': the `new` function is now preferred [INFO] [stdout] --> src/utils.rs:26:1 [INFO] [stdout] | [INFO] [stdout] 26 | / lazy_static! { [INFO] [stdout] 27 | | pub static ref RIBOSUM_85_60_BA_SCORE_MAT: BaScoreMat = { [INFO] [stdout] 28 | | [ [INFO] [stdout] 29 | | (AA, 2.22), (AC, -1.86), (AG, -1.46), (AU, -1.39), [INFO] [stdout] ... | [INFO] [stdout] 44 | | }; [INFO] [stdout] 45 | | } [INFO] [stdout] | |_^ [INFO] [stdout] | [INFO] [stdout] = note: this warning originates in a macro (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated item 'std::sync::ONCE_INIT': the `new` function is now preferred [INFO] [stdout] --> src/utils.rs:26:1 [INFO] [stdout] | [INFO] [stdout] 26 | / lazy_static! { [INFO] [stdout] 27 | | pub static ref RIBOSUM_85_60_BA_SCORE_MAT: BaScoreMat = { [INFO] [stdout] 28 | | [ [INFO] [stdout] 29 | | (AA, 2.22), (AC, -1.86), (AG, -1.46), (AU, -1.39), [INFO] [stdout] ... | [INFO] [stdout] 44 | | }; [INFO] [stdout] 45 | | } [INFO] [stdout] | |_^ [INFO] [stdout] | [INFO] [stdout] = note: this warning originates in a macro (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated item 'std::sync::ONCE_INIT': the `new` function is now preferred [INFO] [stdout] --> src/utils.rs:26:1 [INFO] [stdout] | [INFO] [stdout] 26 | / lazy_static! { [INFO] [stdout] 27 | | pub static ref RIBOSUM_85_60_BA_SCORE_MAT: BaScoreMat = { [INFO] [stdout] 28 | | [ [INFO] [stdout] 29 | | (AA, 2.22), (AC, -1.86), (AG, -1.46), (AU, -1.39), [INFO] [stdout] ... | [INFO] [stdout] 44 | | }; [INFO] [stdout] 45 | | } [INFO] [stdout] | |_^ [INFO] [stdout] | [INFO] [stdout] = note: this warning originates in a macro (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 5 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 1.95s [INFO] running `Command { std: "docker" "inspect" "f2634afd1411d5e1d9eda5ad0f8f361c5bbf8d50dfa4f4d221a91576b4d22aff", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "f2634afd1411d5e1d9eda5ad0f8f361c5bbf8d50dfa4f4d221a91576b4d22aff", kill_on_drop: false }` [INFO] [stdout] f2634afd1411d5e1d9eda5ad0f8f361c5bbf8d50dfa4f4d221a91576b4d22aff [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=0" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env@sha256:a636fd89d022f18117e1dc8fb37a0a009933cdbbe082814857f0e2024962d47c" "/opt/rustwide/cargo-home/bin/cargo" "+1.45.2" "test" "--frozen", kill_on_drop: false }` [INFO] [stdout] 8344cb337803a073cb0eaaecf1359dd1b08d446a82b0bd7af2e8460d4cd0fa87 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "8344cb337803a073cb0eaaecf1359dd1b08d446a82b0bd7af2e8460d4cd0fa87", kill_on_drop: false }` [INFO] [stderr] warning: unnecessary trailing semicolon [INFO] [stderr] --> src/lib.rs:1279:152 [INFO] [stderr] | [INFO] [stderr] 1279 | let ep_of_term_4_log_pf = log_sta_ppf_mat_sets.log_ppf_mats_on_sas.log_ppf_mat_4_gaps_2[&pos_pair_2] + sta_fe_params.extending_gap_penalty;; [INFO] [stderr] | ^ help: remove this semicolon [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(redundant_semicolons)]` on by default [INFO] [stderr] [INFO] [stderr] warning: use of deprecated item 'std::sync::ONCE_INIT': the `new` function is now preferred [INFO] [stderr] --> src/utils.rs:26:1 [INFO] [stderr] | [INFO] [stderr] 26 | / lazy_static! { [INFO] [stderr] 27 | | pub static ref RIBOSUM_85_60_BA_SCORE_MAT: BaScoreMat = { [INFO] [stderr] 28 | | [ [INFO] [stderr] 29 | | (AA, 2.22), (AC, -1.86), (AG, -1.46), (AU, -1.39), [INFO] [stderr] ... | [INFO] [stderr] 44 | | }; [INFO] [stderr] 45 | | } [INFO] [stderr] | |_^ [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(deprecated)]` on by default [INFO] [stderr] = note: this warning originates in a macro (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stderr] [INFO] [stderr] warning: use of deprecated item 'std::sync::ONCE_INIT': the `new` function is now preferred [INFO] [stderr] --> src/utils.rs:26:1 [INFO] [stderr] | [INFO] [stderr] 26 | / lazy_static! { [INFO] [stderr] 27 | | pub static ref RIBOSUM_85_60_BA_SCORE_MAT: BaScoreMat = { [INFO] [stderr] 28 | | [ [INFO] [stderr] 29 | | (AA, 2.22), (AC, -1.86), (AG, -1.46), (AU, -1.39), [INFO] [stderr] ... | [INFO] [stderr] 44 | | }; [INFO] [stderr] 45 | | } [INFO] [stderr] | |_^ [INFO] [stderr] | [INFO] [stderr] = note: this warning originates in a macro (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stderr] [INFO] [stderr] warning: use of deprecated item 'std::sync::ONCE_INIT': the `new` function is now preferred [INFO] [stderr] --> src/utils.rs:26:1 [INFO] [stderr] | [INFO] [stderr] 26 | / lazy_static! { [INFO] [stderr] 27 | | pub static ref RIBOSUM_85_60_BA_SCORE_MAT: BaScoreMat = { [INFO] [stderr] 28 | | [ [INFO] [stderr] 29 | | (AA, 2.22), (AC, -1.86), (AG, -1.46), (AU, -1.39), [INFO] [stderr] ... | [INFO] [stderr] 44 | | }; [INFO] [stderr] 45 | | } [INFO] [stderr] | |_^ [INFO] [stderr] | [INFO] [stderr] = note: this warning originates in a macro (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stderr] [INFO] [stderr] warning: use of deprecated item 'std::sync::ONCE_INIT': the `new` function is now preferred [INFO] [stderr] --> src/utils.rs:26:1 [INFO] [stderr] | [INFO] [stderr] 26 | / lazy_static! { [INFO] [stderr] 27 | | pub static ref RIBOSUM_85_60_BA_SCORE_MAT: BaScoreMat = { [INFO] [stderr] 28 | | [ [INFO] [stderr] 29 | | (AA, 2.22), (AC, -1.86), (AG, -1.46), (AU, -1.39), [INFO] [stderr] ... | [INFO] [stderr] 44 | | }; [INFO] [stderr] 45 | | } [INFO] [stderr] | |_^ [INFO] [stderr] | [INFO] [stderr] = note: this warning originates in a macro (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stderr] [INFO] [stderr] warning: 5 warnings emitted [INFO] [stderr] [INFO] [stderr] warning: unnecessary trailing semicolon [INFO] [stderr] --> src/lib.rs:1279:152 [INFO] [stderr] | [INFO] [stderr] 1279 | let ep_of_term_4_log_pf = log_sta_ppf_mat_sets.log_ppf_mats_on_sas.log_ppf_mat_4_gaps_2[&pos_pair_2] + sta_fe_params.extending_gap_penalty;; [INFO] [stderr] | ^ help: remove this semicolon [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(redundant_semicolons)]` on by default [INFO] [stderr] [INFO] [stderr] warning: use of deprecated item 'std::sync::ONCE_INIT': the `new` function is now preferred [INFO] [stderr] --> src/utils.rs:26:1 [INFO] [stderr] | [INFO] [stderr] 26 | / lazy_static! { [INFO] [stderr] 27 | | pub static ref RIBOSUM_85_60_BA_SCORE_MAT: BaScoreMat = { [INFO] [stderr] 28 | | [ [INFO] [stderr] 29 | | (AA, 2.22), (AC, -1.86), (AG, -1.46), (AU, -1.39), [INFO] [stderr] ... | [INFO] [stderr] 44 | | }; [INFO] [stderr] 45 | | } [INFO] [stderr] | |_^ [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(deprecated)]` on by default [INFO] [stderr] = note: this warning originates in a macro (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stderr] [INFO] [stderr] warning: use of deprecated item 'std::sync::ONCE_INIT': the `new` function is now preferred [INFO] [stderr] --> src/utils.rs:26:1 [INFO] [stderr] | [INFO] [stderr] 26 | / lazy_static! { [INFO] [stderr] 27 | | pub static ref RIBOSUM_85_60_BA_SCORE_MAT: BaScoreMat = { [INFO] [stderr] 28 | | [ [INFO] [stderr] 29 | | (AA, 2.22), (AC, -1.86), (AG, -1.46), (AU, -1.39), [INFO] [stderr] ... | [INFO] [stderr] 44 | | }; [INFO] [stderr] 45 | | } [INFO] [stderr] | |_^ [INFO] [stderr] | [INFO] [stderr] = note: this warning originates in a macro (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stderr] [INFO] [stderr] warning: use of deprecated item 'std::sync::ONCE_INIT': the `new` function is now preferred [INFO] [stderr] --> src/utils.rs:26:1 [INFO] [stderr] | [INFO] [stderr] 26 | / lazy_static! { [INFO] [stderr] 27 | | pub static ref RIBOSUM_85_60_BA_SCORE_MAT: BaScoreMat = { [INFO] [stderr] 28 | | [ [INFO] [stderr] 29 | | (AA, 2.22), (AC, -1.86), (AG, -1.46), (AU, -1.39), [INFO] [stderr] ... | [INFO] [stderr] 44 | | }; [INFO] [stderr] 45 | | } [INFO] [stderr] | |_^ [INFO] [stderr] | [INFO] [stderr] = note: this warning originates in a macro (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stderr] [INFO] [stderr] warning: use of deprecated item 'std::sync::ONCE_INIT': the `new` function is now preferred [INFO] [stderr] --> src/utils.rs:26:1 [INFO] [stderr] | [INFO] [stderr] 26 | / lazy_static! { [INFO] [stderr] 27 | | pub static ref RIBOSUM_85_60_BA_SCORE_MAT: BaScoreMat = { [INFO] [stderr] 28 | | [ [INFO] [stderr] 29 | | (AA, 2.22), (AC, -1.86), (AG, -1.46), (AU, -1.39), [INFO] [stderr] ... | [INFO] [stderr] 44 | | }; [INFO] [stderr] 45 | | } [INFO] [stderr] | |_^ [INFO] [stderr] | [INFO] [stderr] = note: this warning originates in a macro (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stderr] [INFO] [stderr] warning: 5 warnings emitted [INFO] [stderr] [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 0.48s [INFO] [stderr] Running /opt/rustwide/target/debug/deps/rnafamprob-2a8e786bcd21f73d [INFO] [stdout] [INFO] [stderr] Running /opt/rustwide/target/debug/deps/rnafamprob-618c3e30a7f7becc [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out [INFO] [stdout] [INFO] [stderr] Running /opt/rustwide/target/debug/deps/tests-cb8583739ffd5a71 [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] running 1 test [INFO] [stdout] test test_rnafam_program ... FAILED [INFO] [stdout] [INFO] [stdout] failures: [INFO] [stdout] [INFO] [stdout] ---- test_rnafam_program stdout ---- [INFO] [stdout] thread 'test_rnafam_program' panicked at 'Failed to run the RNAfamProb program.: Os { code: 2, kind: NotFound, message: "No such file or directory" }', tests/tests.rs:19:3 [INFO] [stdout] stack backtrace: [INFO] [stdout] 0: 0x55d9b887dac5 - backtrace::backtrace::libunwind::trace::ha215bbf14e328799 [INFO] [stdout] at /cargo/registry/src/github.com-1ecc6299db9ec823/backtrace-0.3.46/src/backtrace/libunwind.rs:86 [INFO] [stdout] 1: 0x55d9b887dac5 - backtrace::backtrace::trace_unsynchronized::h3384b099b135857a [INFO] [stdout] at /cargo/registry/src/github.com-1ecc6299db9ec823/backtrace-0.3.46/src/backtrace/mod.rs:66 [INFO] [stdout] 2: 0x55d9b887dac5 - std::sys_common::backtrace::_print_fmt::hfec93740f7294682 [INFO] [stdout] at src/libstd/sys_common/backtrace.rs:78 [INFO] [stdout] 3: 0x55d9b887dac5 - ::fmt::h5fe20777f4174074 [INFO] [stdout] at src/libstd/sys_common/backtrace.rs:59 [INFO] [stdout] 4: 0x55d9b88a592c - core::fmt::write::he14c3177144df275 [INFO] [stdout] at src/libcore/fmt/mod.rs:1076 [INFO] [stdout] 5: 0x55d9b8830b55 - std::io::Write::write_fmt::ha866504c9998fe5e [INFO] [stdout] at /rustc/d3fb005a39e62501b8b0b356166e515ae24e2e54/src/libstd/io/mod.rs:1537 [INFO] [stdout] 6: 0x55d9b8877e91 - std::io::impls::>::write_fmt::h8f0a2af895559593 [INFO] [stdout] at src/libstd/io/impls.rs:176 [INFO] [stdout] 7: 0x55d9b8880270 - std::sys_common::backtrace::_print::h9cfa4c87526ba064 [INFO] [stdout] at src/libstd/sys_common/backtrace.rs:62 [INFO] [stdout] 8: 0x55d9b8880270 - std::sys_common::backtrace::print::h94936584848b3272 [INFO] [stdout] at src/libstd/sys_common/backtrace.rs:49 [INFO] [stdout] 9: 0x55d9b8880270 - std::panicking::default_hook::{{closure}}::h733b20cc9b496e46 [INFO] [stdout] at src/libstd/panicking.rs:198 [INFO] [stdout] 10: 0x55d9b887ff6a - std::panicking::default_hook::h556d8cff6c12a651 [INFO] [stdout] at src/libstd/panicking.rs:215 [INFO] [stdout] 11: 0x55d9b88808a7 - std::panicking::rust_panic_with_hook::ha0c7ca5b39baa9d5 [INFO] [stdout] at src/libstd/panicking.rs:486 [INFO] [stdout] 12: 0x55d9b88804ab - rust_begin_unwind [INFO] [stdout] at src/libstd/panicking.rs:388 [INFO] [stdout] 13: 0x55d9b88a42c1 - core::panicking::panic_fmt::h106d7128cbbc7cd2 [INFO] [stdout] at src/libcore/panicking.rs:101 [INFO] [stdout] 14: 0x55d9b88a40e3 - core::option::expect_none_failed::hfcafefc70a7975bb [INFO] [stdout] at src/libcore/option.rs:1272 [INFO] [stdout] 15: 0x55d9b882b924 - core::result::Result::expect::hc25c0b1c9b81e451 [INFO] [stdout] at /rustc/d3fb005a39e62501b8b0b356166e515ae24e2e54/src/libcore/result.rs:963 [INFO] [stdout] 16: 0x55d9b882dcc3 - tests::run_command::hb0fd7e51062124e2 [INFO] [stdout] at tests/tests.rs:19 [INFO] [stdout] 17: 0x55d9b882ddf6 - tests::test_rnafam_program::h8d49299b6a2d307e [INFO] [stdout] at tests/tests.rs:12 [INFO] [stdout] 18: 0x55d9b882dcfa - tests::test_rnafam_program::{{closure}}::hbad792e1690ba0a5 [INFO] [stdout] at tests/tests.rs:8 [INFO] [stdout] 19: 0x55d9b882e9be - core::ops::function::FnOnce::call_once::h6cae33d2925c5418 [INFO] [stdout] at /rustc/d3fb005a39e62501b8b0b356166e515ae24e2e54/src/libcore/ops/function.rs:232 [INFO] [stdout] 20: 0x55d9b8857d42 - as core::ops::function::FnOnce>::call_once::h1efcc6525b6aa145 [INFO] [stdout] at /rustc/d3fb005a39e62501b8b0b356166e515ae24e2e54/src/liballoc/boxed.rs:1076 [INFO] [stdout] 21: 0x55d9b8857d42 - as core::ops::function::FnOnce<()>>::call_once::hafd7ae2f3c23f399 [INFO] [stdout] at /rustc/d3fb005a39e62501b8b0b356166e515ae24e2e54/src/libstd/panic.rs:318 [INFO] [stdout] 22: 0x55d9b8857d42 - std::panicking::try::do_call::h83baf26f5fc8b0a5 [INFO] [stdout] at /rustc/d3fb005a39e62501b8b0b356166e515ae24e2e54/src/libstd/panicking.rs:297 [INFO] [stdout] 23: 0x55d9b8857d42 - std::panicking::try::h8d28a678b90bb6ac [INFO] [stdout] at /rustc/d3fb005a39e62501b8b0b356166e515ae24e2e54/src/libstd/panicking.rs:274 [INFO] [stdout] 24: 0x55d9b8857d42 - std::panic::catch_unwind::h20734e8710644f59 [INFO] [stdout] at /rustc/d3fb005a39e62501b8b0b356166e515ae24e2e54/src/libstd/panic.rs:394 [INFO] [stdout] 25: 0x55d9b8857d42 - test::run_test_in_process::h2c1fb2dd0c9013bb [INFO] [stdout] at src/libtest/lib.rs:541 [INFO] [stdout] 26: 0x55d9b8857d42 - test::run_test::run_test_inner::{{closure}}::h7c58b7aefdb9adf3 [INFO] [stdout] at src/libtest/lib.rs:450 [INFO] [stdout] 27: 0x55d9b8830016 - std::sys_common::backtrace::__rust_begin_short_backtrace::h498f21fd16bdff05 [INFO] [stdout] at /rustc/d3fb005a39e62501b8b0b356166e515ae24e2e54/src/libstd/sys_common/backtrace.rs:130 [INFO] [stdout] 28: 0x55d9b8835355 - std::thread::Builder::spawn_unchecked::{{closure}}::{{closure}}::hb35336a0a0430e6d [INFO] [stdout] at /rustc/d3fb005a39e62501b8b0b356166e515ae24e2e54/src/libstd/thread/mod.rs:475 [INFO] [stdout] 29: 0x55d9b8835355 - as core::ops::function::FnOnce<()>>::call_once::h8569a86268e08ad1 [INFO] [stdout] at /rustc/d3fb005a39e62501b8b0b356166e515ae24e2e54/src/libstd/panic.rs:318 [INFO] [stdout] 30: 0x55d9b8835355 - std::panicking::try::do_call::hcc5472a0f1ff31ac [INFO] [stdout] at /rustc/d3fb005a39e62501b8b0b356166e515ae24e2e54/src/libstd/panicking.rs:297 [INFO] [stdout] 31: 0x55d9b8835355 - std::panicking::try::h774b0c4fd770945c [INFO] [stdout] at /rustc/d3fb005a39e62501b8b0b356166e515ae24e2e54/src/libstd/panicking.rs:274 [INFO] [stdout] 32: 0x55d9b8835355 - std::panic::catch_unwind::hfaf7c6beb53320e7 [INFO] [stdout] at /rustc/d3fb005a39e62501b8b0b356166e515ae24e2e54/src/libstd/panic.rs:394 [INFO] [stdout] 33: 0x55d9b8835355 - std::thread::Builder::spawn_unchecked::{{closure}}::h481343a824704446 [INFO] [stdout] at /rustc/d3fb005a39e62501b8b0b356166e515ae24e2e54/src/libstd/thread/mod.rs:474 [INFO] [stdout] 34: 0x55d9b8835355 - core::ops::function::FnOnce::call_once{{vtable.shim}}::h9dcbc7fc2c4c6c48 [INFO] [stdout] at /rustc/d3fb005a39e62501b8b0b356166e515ae24e2e54/src/libcore/ops/function.rs:232 [INFO] [stdout] 35: 0x55d9b8886c0a - as core::ops::function::FnOnce>::call_once::hf311c88f1fadb9b8 [INFO] [stdout] at /rustc/d3fb005a39e62501b8b0b356166e515ae24e2e54/src/liballoc/boxed.rs:1076 [INFO] [stdout] 36: 0x55d9b8886c0a - as core::ops::function::FnOnce>::call_once::h8cfb7235b81393ef [INFO] [stdout] at /rustc/d3fb005a39e62501b8b0b356166e515ae24e2e54/src/liballoc/boxed.rs:1076 [INFO] [stdout] 37: 0x55d9b8886c0a - std::sys::unix::thread::Thread::new::thread_start::hf745c8cf29a89648 [INFO] [stdout] at src/libstd/sys/unix/thread.rs:87 [INFO] [stdout] 38: 0x7fb5153b0609 - start_thread [INFO] [stdout] 39: 0x7fb5152bc103 - __clone [INFO] [stdout] 40: 0x0 - [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] failures: [INFO] [stdout] test_rnafam_program [INFO] [stdout] [INFO] [stdout] test result: FAILED. 0 passed; 1 failed; 0 ignored; 0 measured; 0 filtered out [INFO] [stdout] [INFO] [stderr] error: test failed, to rerun pass '--test tests' [INFO] running `Command { std: "docker" "inspect" "8344cb337803a073cb0eaaecf1359dd1b08d446a82b0bd7af2e8460d4cd0fa87", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "8344cb337803a073cb0eaaecf1359dd1b08d446a82b0bd7af2e8460d4cd0fa87", kill_on_drop: false }` [INFO] [stdout] 8344cb337803a073cb0eaaecf1359dd1b08d446a82b0bd7af2e8460d4cd0fa87