[INFO] crate hdf5 0.6.1 is already in cache [INFO] testing hdf5-0.6.1 against 1.45.2 for beta-1.46-1 [INFO] extracting crate hdf5 0.6.1 into /workspace/builds/worker-8/source [INFO] validating manifest of crates.io crate hdf5 0.6.1 on toolchain 1.45.2 [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+1.45.2" "read-manifest" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] started tweaking crates.io crate hdf5 0.6.1 [INFO] finished tweaking crates.io crate hdf5 0.6.1 [INFO] tweaked toml for crates.io crate hdf5 0.6.1 written to /workspace/builds/worker-8/source/Cargo.toml [INFO] crate crates.io crate hdf5 0.6.1 already has a lockfile, it will not be regenerated [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+1.45.2" "fetch" "--locked" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-8/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-8/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=0" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env@sha256:a636fd89d022f18117e1dc8fb37a0a009933cdbbe082814857f0e2024962d47c" "/opt/rustwide/cargo-home/bin/cargo" "+1.45.2" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 3dda646dc35ae4771b124f8f28536353bd89def1ae48d3cc3ca79542e147f966 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "3dda646dc35ae4771b124f8f28536353bd89def1ae48d3cc3ca79542e147f966", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "3dda646dc35ae4771b124f8f28536353bd89def1ae48d3cc3ca79542e147f966", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "3dda646dc35ae4771b124f8f28536353bd89def1ae48d3cc3ca79542e147f966", kill_on_drop: false }` [INFO] [stdout] 3dda646dc35ae4771b124f8f28536353bd89def1ae48d3cc3ca79542e147f966 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-8/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-8/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=0" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env@sha256:a636fd89d022f18117e1dc8fb37a0a009933cdbbe082814857f0e2024962d47c" "/opt/rustwide/cargo-home/bin/cargo" "+1.45.2" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 50e280ebcfb2a48914ff418a514a0c95558f8af9fd3164ee2fcf63706e8828f3 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "50e280ebcfb2a48914ff418a514a0c95558f8af9fd3164ee2fcf63706e8828f3", kill_on_drop: false }` [INFO] [stderr] Compiling libloading v0.6.0 [INFO] [stderr] Compiling syn v1.0.17 [INFO] [stderr] Compiling scopeguard v1.1.0 [INFO] [stderr] Compiling smallvec v1.3.0 [INFO] [stderr] Compiling ndarray v0.13.0 [INFO] [stderr] Compiling ascii v1.0.0 [INFO] [stderr] Compiling itertools v0.8.2 [INFO] [stderr] Compiling proc-macro2 v1.0.10 [INFO] [stderr] Compiling regex v1.3.6 [INFO] [stderr] Compiling lock_api v0.3.4 [INFO] [stderr] Compiling parking_lot_core v0.7.1 [INFO] [stderr] Compiling hdf5-types v0.6.1 [INFO] [stderr] Compiling quote v1.0.3 [INFO] [stderr] Compiling parking_lot v0.10.2 [INFO] [stderr] Compiling hdf5-sys v0.6.1 [INFO] [stderr] error: failed to run custom build command for `hdf5-sys v0.6.1` [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] process didn't exit successfully: `/opt/rustwide/target/debug/build/hdf5-sys-9d375df5df3d73d2/build-script-build` (exit code: 101) [INFO] [stderr] --- stdout [INFO] [stderr] Attempting to find HDF5 via pkg-config... [INFO] [stderr] [INFO] [stderr] --- stderr [INFO] [stderr] thread 'main' panicked at 'Unable to locate HDF5 root directory and/or headers.', /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hdf5-sys-0.6.1/build.rs:523:13 [INFO] [stderr] stack backtrace: [INFO] [stderr] 0: 0x55d1531b26a5 - backtrace::backtrace::libunwind::trace::ha215bbf14e328799 [INFO] [stderr] at /cargo/registry/src/github.com-1ecc6299db9ec823/backtrace-0.3.46/src/backtrace/libunwind.rs:86 [INFO] [stderr] 1: 0x55d1531b26a5 - backtrace::backtrace::trace_unsynchronized::h3384b099b135857a [INFO] [stderr] at /cargo/registry/src/github.com-1ecc6299db9ec823/backtrace-0.3.46/src/backtrace/mod.rs:66 [INFO] [stderr] 2: 0x55d1531b26a5 - std::sys_common::backtrace::_print_fmt::hfec93740f7294682 [INFO] [stderr] at src/libstd/sys_common/backtrace.rs:78 [INFO] [stderr] 3: 0x55d1531b26a5 - ::fmt::h5fe20777f4174074 [INFO] [stderr] at src/libstd/sys_common/backtrace.rs:59 [INFO] [stderr] 4: 0x55d1531d626c - core::fmt::write::he14c3177144df275 [INFO] [stderr] at src/libcore/fmt/mod.rs:1076 [INFO] [stderr] 5: 0x55d1531af423 - std::io::Write::write_fmt::h8e26323bfab8bcc5 [INFO] [stderr] at src/libstd/io/mod.rs:1537 [INFO] [stderr] 6: 0x55d1531b4c90 - std::sys_common::backtrace::_print::h9cfa4c87526ba064 [INFO] [stderr] at src/libstd/sys_common/backtrace.rs:62 [INFO] [stderr] 7: 0x55d1531b4c90 - std::sys_common::backtrace::print::h94936584848b3272 [INFO] [stderr] at src/libstd/sys_common/backtrace.rs:49 [INFO] [stderr] 8: 0x55d1531b4c90 - std::panicking::default_hook::{{closure}}::h733b20cc9b496e46 [INFO] [stderr] at src/libstd/panicking.rs:198 [INFO] [stderr] 9: 0x55d1531b49dc - std::panicking::default_hook::h556d8cff6c12a651 [INFO] [stderr] at src/libstd/panicking.rs:218 [INFO] [stderr] 10: 0x55d1531b52c7 - std::panicking::rust_panic_with_hook::ha0c7ca5b39baa9d5 [INFO] [stderr] at src/libstd/panicking.rs:486 [INFO] [stderr] 11: 0x55d1530c8559 - std::panicking::begin_panic::h59024ada15113e76 [INFO] [stderr] at /rustc/d3fb005a39e62501b8b0b356166e515ae24e2e54/src/libstd/panicking.rs:410 [INFO] [stderr] 12: 0x55d152f9155c - build_script_build::LibrarySearcher::try_locate_hdf5_library::hac13afeeb9eb880e [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hdf5-sys-0.6.1/build.rs:523 [INFO] [stderr] 13: 0x55d152f9290c - build_script_build::main::ha6572c060b29bd84 [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hdf5-sys-0.6.1/build.rs:601 [INFO] [stderr] 14: 0x55d152f9cb1b - std::rt::lang_start::{{closure}}::hbc3df960d12fba5b [INFO] [stderr] at /rustc/d3fb005a39e62501b8b0b356166e515ae24e2e54/src/libstd/rt.rs:67 [INFO] [stderr] 15: 0x55d1531b5698 - std::rt::lang_start_internal::{{closure}}::hefb489d56a389b75 [INFO] [stderr] at src/libstd/rt.rs:52 [INFO] [stderr] 16: 0x55d1531b5698 - std::panicking::try::do_call::hb2bfa58b743656f1 [INFO] [stderr] at src/libstd/panicking.rs:297 [INFO] [stderr] 17: 0x55d1531b5698 - std::panicking::try::haaa85a89ce3784c3 [INFO] [stderr] at src/libstd/panicking.rs:274 [INFO] [stderr] 18: 0x55d1531b5698 - std::panic::catch_unwind::h49baa277f74e60cb [INFO] [stderr] at src/libstd/panic.rs:394 [INFO] [stderr] 19: 0x55d1531b5698 - std::rt::lang_start_internal::h7aa2f6739b31fe58 [INFO] [stderr] at src/libstd/rt.rs:51 [INFO] [stderr] 20: 0x55d152f9caf7 - std::rt::lang_start::he97d6e7e93670597 [INFO] [stderr] at /rustc/d3fb005a39e62501b8b0b356166e515ae24e2e54/src/libstd/rt.rs:67 [INFO] [stderr] 21: 0x55d152f933ba - main [INFO] [stderr] 22: 0x7f17bf6720b3 - __libc_start_main [INFO] [stderr] 23: 0x55d152f8d19e - _start [INFO] [stderr] 24: 0x0 - [INFO] [stderr] [INFO] [stderr] warning: build failed, waiting for other jobs to finish... [INFO] [stderr] error: build failed [INFO] running `Command { std: "docker" "inspect" "50e280ebcfb2a48914ff418a514a0c95558f8af9fd3164ee2fcf63706e8828f3", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "50e280ebcfb2a48914ff418a514a0c95558f8af9fd3164ee2fcf63706e8828f3", kill_on_drop: false }` [INFO] [stdout] 50e280ebcfb2a48914ff418a514a0c95558f8af9fd3164ee2fcf63706e8828f3