[INFO] crate flann 0.1.0 is already in cache [INFO] testing flann-0.1.0 against 1.45.2 for beta-1.46-1 [INFO] extracting crate flann 0.1.0 into /workspace/builds/worker-9/source [INFO] validating manifest of crates.io crate flann 0.1.0 on toolchain 1.45.2 [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+1.45.2" "read-manifest" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] started tweaking crates.io crate flann 0.1.0 [INFO] finished tweaking crates.io crate flann 0.1.0 [INFO] tweaked toml for crates.io crate flann 0.1.0 written to /workspace/builds/worker-9/source/Cargo.toml [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+1.45.2" "generate-lockfile" "--manifest-path" "Cargo.toml" "-Zno-index-update", kill_on_drop: false }` [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+1.45.2" "fetch" "--locked" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-9/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-9/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=0" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env@sha256:a636fd89d022f18117e1dc8fb37a0a009933cdbbe082814857f0e2024962d47c" "/opt/rustwide/cargo-home/bin/cargo" "+1.45.2" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 861ecc84447714b96e41315cb5a58a9ffb8a46000942281b8211f501b437dbdb [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "861ecc84447714b96e41315cb5a58a9ffb8a46000942281b8211f501b437dbdb", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "861ecc84447714b96e41315cb5a58a9ffb8a46000942281b8211f501b437dbdb", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "861ecc84447714b96e41315cb5a58a9ffb8a46000942281b8211f501b437dbdb", kill_on_drop: false }` [INFO] [stdout] 861ecc84447714b96e41315cb5a58a9ffb8a46000942281b8211f501b437dbdb [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-9/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-9/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=0" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env@sha256:a636fd89d022f18117e1dc8fb37a0a009933cdbbe082814857f0e2024962d47c" "/opt/rustwide/cargo-home/bin/cargo" "+1.45.2" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] [stdout] 04d1928a36321d02f31c0ccd00982cfb8e877bb076f19831059dd341dae4a1ad [INFO] running `Command { std: "docker" "start" "-a" "04d1928a36321d02f31c0ccd00982cfb8e877bb076f19831059dd341dae4a1ad", kill_on_drop: false }` [INFO] [stderr] Compiling failure v0.1.8 [INFO] [stderr] Compiling bindgen v0.32.3 [INFO] [stderr] Compiling flann-sys v0.1.0 [INFO] [stderr] error: failed to run custom build command for `flann-sys v0.1.0` [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] process didn't exit successfully: `/opt/rustwide/target/debug/build/flann-sys-575b1fbd23c3a536/build-script-build` (exit code: 101) [INFO] [stderr] --- stdout [INFO] [stderr] cargo:rustc-link-lib=gomp [INFO] [stderr] cargo:rustc-link-lib=stdc++ [INFO] [stderr] running: "cmake" "/opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/flann-sys-0.1.0/flann" "-DBUILD_EXAMPLES=OFF" "-DBUILD_TESTS=OFF" "-DBUILD_DOC=OFF" "-DBUILD_PYTHON_BINDINGS=OFF" "-DBUILD_MATLAB_BINDINGS=OFF" "-DUSE_OPENMP=ON" "-DCMAKE_INSTALL_PREFIX=/opt/rustwide/target/debug/build/flann-sys-3789a9212a53562d/out" "-DCMAKE_C_FLAGS= -ffunction-sections -fdata-sections -fPIC -m64" "-DCMAKE_C_COMPILER=/usr/bin/cc" "-DCMAKE_CXX_FLAGS= -ffunction-sections -fdata-sections -fPIC -m64" "-DCMAKE_CXX_COMPILER=/usr/bin/c++" "-DCMAKE_ASM_FLAGS= -ffunction-sections -fdata-sections -fPIC -m64" "-DCMAKE_ASM_COMPILER=/usr/bin/cc" "-DCMAKE_BUILD_TYPE=Debug" [INFO] [stderr] -- The C compiler identification is GNU 9.3.0 [INFO] [stderr] -- The CXX compiler identification is GNU 9.3.0 [INFO] [stderr] -- Check for working C compiler: /usr/bin/cc [INFO] [stderr] -- Check for working C compiler: /usr/bin/cc -- works [INFO] [stderr] -- Detecting C compiler ABI info [INFO] [stderr] -- Detecting C compiler ABI info - done [INFO] [stderr] -- Detecting C compile features [INFO] [stderr] -- Detecting C compile features - done [INFO] [stderr] -- Check for working CXX compiler: /usr/bin/c++ [INFO] [stderr] -- Check for working CXX compiler: /usr/bin/c++ -- works [INFO] [stderr] -- Detecting CXX compiler ABI info [INFO] [stderr] -- Detecting CXX compiler ABI info - done [INFO] [stderr] -- Detecting CXX compile features [INFO] [stderr] -- Detecting CXX compile features - done [INFO] [stderr] -- Found PythonInterp: /usr/bin/python (found version "2.7.18") [INFO] [stderr] -- Could NOT find HDF5 (missing: HDF5_LIBRARIES HDF5_INCLUDE_DIRS) (found version "") [INFO] [stderr] -- Could NOT find GTest (missing: GTEST_LIBRARY GTEST_INCLUDE_DIR GTEST_MAIN_LIBRARY) [INFO] [stderr] -- Found OpenMP_C: -fopenmp (found version "4.5") [INFO] [stderr] -- Found OpenMP_CXX: -fopenmp (found version "4.5") [INFO] [stderr] -- Found OpenMP: TRUE (found version "4.5") [INFO] [stderr] -- Install prefix: /opt/rustwide/target/debug/build/flann-sys-3789a9212a53562d/out [INFO] [stderr] -- Build type: Debug [INFO] [stderr] -- Building C bindings: ON [INFO] [stderr] -- Building examples: OFF [INFO] [stderr] -- Building tests: OFF [INFO] [stderr] -- Building documentation: OFF [INFO] [stderr] -- Building python bindings: OFF [INFO] [stderr] -- Building matlab bindings: OFF [INFO] [stderr] -- Building CUDA library: OFF [INFO] [stderr] -- Using OpenMP support: ON [INFO] [stderr] -- Using MPI support: OFF [INFO] [stderr] -- Configuring incomplete, errors occurred! [INFO] [stderr] See also "/opt/rustwide/target/debug/build/flann-sys-3789a9212a53562d/out/build/CMakeFiles/CMakeOutput.log". [INFO] [stderr] [INFO] [stderr] --- stderr [INFO] [stderr] CMake Warning at CMakeLists.txt:78 (message): [INFO] [stderr] hdf5 library not found, some tests will not be run [INFO] [stderr] [INFO] [stderr] [INFO] [stderr] CMake Warning at CMakeLists.txt:117 (message): [INFO] [stderr] gtest library not found, some tests will not be run [INFO] [stderr] [INFO] [stderr] [INFO] [stderr] CMake Error: Could not open file for write in copy operation /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/flann-sys-0.1.0/flann/src/cpp/flann/config.h.tmp [INFO] [stderr] CMake Error: : System Error: Read-only file system [INFO] [stderr] CMake Error at src/cpp/CMakeLists.txt:5 (configure_file): [INFO] [stderr] configure_file Problem configuring file [INFO] [stderr] [INFO] [stderr] [INFO] [stderr] thread 'main' panicked at ' [INFO] [stderr] command did not execute successfully, got: exit code: 1 [INFO] [stderr] [INFO] [stderr] build script failed, must exit now', /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/cmake-0.1.44/src/lib.rs:885:5 [INFO] [stderr] stack backtrace: [INFO] [stderr] 0: 0x55a35b18d815 - backtrace::backtrace::libunwind::trace::ha215bbf14e328799 [INFO] [stderr] at /cargo/registry/src/github.com-1ecc6299db9ec823/backtrace-0.3.46/src/backtrace/libunwind.rs:86 [INFO] [stderr] 1: 0x55a35b18d815 - backtrace::backtrace::trace_unsynchronized::h3384b099b135857a [INFO] [stderr] at /cargo/registry/src/github.com-1ecc6299db9ec823/backtrace-0.3.46/src/backtrace/mod.rs:66 [INFO] [stderr] 2: 0x55a35b18d815 - std::sys_common::backtrace::_print_fmt::hfec93740f7294682 [INFO] [stderr] at src/libstd/sys_common/backtrace.rs:78 [INFO] [stderr] 3: 0x55a35b18d815 - ::fmt::h5fe20777f4174074 [INFO] [stderr] at src/libstd/sys_common/backtrace.rs:59 [INFO] [stderr] 4: 0x55a35b1b898c - core::fmt::write::he14c3177144df275 [INFO] [stderr] at src/libcore/fmt/mod.rs:1076 [INFO] [stderr] 5: 0x55a35b189983 - std::io::Write::write_fmt::h8e26323bfab8bcc5 [INFO] [stderr] at src/libstd/io/mod.rs:1537 [INFO] [stderr] 6: 0x55a35b190670 - std::sys_common::backtrace::_print::h9cfa4c87526ba064 [INFO] [stderr] at src/libstd/sys_common/backtrace.rs:62 [INFO] [stderr] 7: 0x55a35b190670 - std::sys_common::backtrace::print::h94936584848b3272 [INFO] [stderr] at src/libstd/sys_common/backtrace.rs:49 [INFO] [stderr] 8: 0x55a35b190670 - std::panicking::default_hook::{{closure}}::h733b20cc9b496e46 [INFO] [stderr] at src/libstd/panicking.rs:198 [INFO] [stderr] 9: 0x55a35b1903bc - std::panicking::default_hook::h556d8cff6c12a651 [INFO] [stderr] at src/libstd/panicking.rs:218 [INFO] [stderr] 10: 0x55a35b190ca7 - std::panicking::rust_panic_with_hook::ha0c7ca5b39baa9d5 [INFO] [stderr] at src/libstd/panicking.rs:486 [INFO] [stderr] 11: 0x55a35b1908ab - rust_begin_unwind [INFO] [stderr] at src/libstd/panicking.rs:388 [INFO] [stderr] 12: 0x55a35b19081b - std::panicking::begin_panic_fmt::ha757bc84d5ed8cb6 [INFO] [stderr] at src/libstd/panicking.rs:342 [INFO] [stderr] 13: 0x55a35ac59437 - cmake::fail::h761ef9606c743d85 [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/cmake-0.1.44/src/lib.rs:885 [INFO] [stderr] 14: 0x55a35ac58d7c - cmake::run::hd94b820db5adec70 [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/cmake-0.1.44/src/lib.rs:863 [INFO] [stderr] 15: 0x55a35ac5474a - cmake::Config::build::h3493b33c52b2fc86 [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/cmake-0.1.44/src/lib.rs:698 [INFO] [stderr] 16: 0x55a35ac4f4e6 - build_script_build::main::hb1373accf6adffc1 [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/flann-sys-0.1.0/build.rs:30 [INFO] [stderr] 17: 0x55a35ac518ab - std::rt::lang_start::{{closure}}::hd3296718f1a982cc [INFO] [stderr] at /rustc/d3fb005a39e62501b8b0b356166e515ae24e2e54/src/libstd/rt.rs:67 [INFO] [stderr] 18: 0x55a35b191078 - std::rt::lang_start_internal::{{closure}}::hefb489d56a389b75 [INFO] [stderr] at src/libstd/rt.rs:52 [INFO] [stderr] 19: 0x55a35b191078 - std::panicking::try::do_call::hb2bfa58b743656f1 [INFO] [stderr] at src/libstd/panicking.rs:297 [INFO] [stderr] 20: 0x55a35b191078 - std::panicking::try::haaa85a89ce3784c3 [INFO] [stderr] at src/libstd/panicking.rs:274 [INFO] [stderr] 21: 0x55a35b191078 - std::panic::catch_unwind::h49baa277f74e60cb [INFO] [stderr] at src/libstd/panic.rs:394 [INFO] [stderr] 22: 0x55a35b191078 - std::rt::lang_start_internal::h7aa2f6739b31fe58 [INFO] [stderr] at src/libstd/rt.rs:51 [INFO] [stderr] 23: 0x55a35ac51887 - std::rt::lang_start::h60b7f48daa5fce9c [INFO] [stderr] at /rustc/d3fb005a39e62501b8b0b356166e515ae24e2e54/src/libstd/rt.rs:67 [INFO] [stderr] 24: 0x55a35ac4f8ea - main [INFO] [stderr] 25: 0x7f3f01f960b3 - __libc_start_main [INFO] [stderr] 26: 0x55a35ac4f19e - _start [INFO] [stderr] 27: 0x0 - [INFO] [stderr] [INFO] running `Command { std: "docker" "inspect" "04d1928a36321d02f31c0ccd00982cfb8e877bb076f19831059dd341dae4a1ad", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "04d1928a36321d02f31c0ccd00982cfb8e877bb076f19831059dd341dae4a1ad", kill_on_drop: false }` [INFO] [stdout] 04d1928a36321d02f31c0ccd00982cfb8e877bb076f19831059dd341dae4a1ad