[INFO] crate debruijn 0.3.2 is already in cache [INFO] testing debruijn-0.3.2 against 1.45.2 for beta-1.46-1 [INFO] extracting crate debruijn 0.3.2 into /workspace/builds/worker-8/source [INFO] validating manifest of crates.io crate debruijn 0.3.2 on toolchain 1.45.2 [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+1.45.2" "read-manifest" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] started tweaking crates.io crate debruijn 0.3.2 [INFO] finished tweaking crates.io crate debruijn 0.3.2 [INFO] tweaked toml for crates.io crate debruijn 0.3.2 written to /workspace/builds/worker-8/source/Cargo.toml [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+1.45.2" "generate-lockfile" "--manifest-path" "Cargo.toml" "-Zno-index-update", kill_on_drop: false }` [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+1.45.2" "fetch" "--locked" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-8/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-8/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=0" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env@sha256:a636fd89d022f18117e1dc8fb37a0a009933cdbbe082814857f0e2024962d47c" "/opt/rustwide/cargo-home/bin/cargo" "+1.45.2" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] [stdout] f5e285f82e507192f1173a9fd379f10c1f3baead9557880e05436d2f915b29e3 [INFO] running `Command { std: "docker" "start" "-a" "f5e285f82e507192f1173a9fd379f10c1f3baead9557880e05436d2f915b29e3", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "f5e285f82e507192f1173a9fd379f10c1f3baead9557880e05436d2f915b29e3", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "f5e285f82e507192f1173a9fd379f10c1f3baead9557880e05436d2f915b29e3", kill_on_drop: false }` [INFO] [stdout] f5e285f82e507192f1173a9fd379f10c1f3baead9557880e05436d2f915b29e3 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-8/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-8/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=0" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env@sha256:a636fd89d022f18117e1dc8fb37a0a009933cdbbe082814857f0e2024962d47c" "/opt/rustwide/cargo-home/bin/cargo" "+1.45.2" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 8dca0bc09e76b179d0cae8de380747e83a7d7d2796a5fd8ae517b5ca2ff1a6b9 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "8dca0bc09e76b179d0cae8de380747e83a7d7d2796a5fd8ae517b5ca2ff1a6b9", kill_on_drop: false }` [INFO] [stderr] Compiling autocfg v1.0.0 [INFO] [stderr] Compiling proc-macro2 v1.0.19 [INFO] [stderr] Compiling maybe-uninit v2.0.0 [INFO] [stderr] Compiling unicode-xid v0.2.1 [INFO] [stderr] Compiling syn v1.0.36 [INFO] [stderr] Compiling rayon-core v1.7.1 [INFO] [stderr] Compiling serde_derive v1.0.114 [INFO] [stderr] Compiling scopeguard v1.1.0 [INFO] [stderr] Compiling serde v1.0.114 [INFO] [stderr] Compiling ryu v1.0.5 [INFO] [stderr] Compiling log v0.4.11 [INFO] [stderr] Compiling either v1.5.3 [INFO] [stderr] Compiling serde_json v1.0.57 [INFO] [stderr] Compiling rand_core v0.5.1 [INFO] [stderr] Compiling itoa v0.4.6 [INFO] [stderr] Compiling bit-vec v0.6.2 [INFO] [stderr] Compiling smallvec v1.4.1 [INFO] [stderr] Compiling itertools v0.9.0 [INFO] [stderr] Compiling wyhash v0.4.1 [INFO] [stderr] Compiling num_cpus v1.13.0 [INFO] [stderr] Compiling bit-set v0.5.2 [INFO] [stderr] Compiling crossbeam-utils v0.7.2 [INFO] [stderr] Compiling num-traits v0.2.12 [INFO] [stderr] Compiling memoffset v0.5.5 [INFO] [stderr] Compiling num-integer v0.1.43 [INFO] [stderr] Compiling crossbeam-epoch v0.8.2 [INFO] [stderr] Compiling num-bigint v0.3.0 [INFO] [stderr] Compiling rayon v1.3.1 [INFO] [stderr] Compiling num-iter v0.1.41 [INFO] [stderr] Compiling num-rational v0.3.0 [INFO] [stderr] Compiling quote v1.0.7 [INFO] [stderr] Compiling crossbeam-queue v0.2.3 [INFO] [stderr] Compiling crossbeam-deque v0.7.3 [INFO] [stderr] Compiling num-complex v0.3.0 [INFO] [stderr] Compiling num v0.3.0 [INFO] [stderr] Compiling boomphf v0.5.5 [INFO] [stderr] Compiling debruijn v0.3.2 (/opt/rustwide/workdir) [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 45.73s [INFO] running `Command { std: "docker" "inspect" "8dca0bc09e76b179d0cae8de380747e83a7d7d2796a5fd8ae517b5ca2ff1a6b9", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "8dca0bc09e76b179d0cae8de380747e83a7d7d2796a5fd8ae517b5ca2ff1a6b9", kill_on_drop: false }` [INFO] [stdout] 8dca0bc09e76b179d0cae8de380747e83a7d7d2796a5fd8ae517b5ca2ff1a6b9 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-8/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-8/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=0" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env@sha256:a636fd89d022f18117e1dc8fb37a0a009933cdbbe082814857f0e2024962d47c" "/opt/rustwide/cargo-home/bin/cargo" "+1.45.2" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }` [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] [stdout] f620b2f6210c0c36c6ac2087aaed558504787833dd79a53037560b0faca31fea [INFO] running `Command { std: "docker" "start" "-a" "f620b2f6210c0c36c6ac2087aaed558504787833dd79a53037560b0faca31fea", kill_on_drop: false }` [INFO] [stderr] Compiling rand_core v0.4.2 [INFO] [stderr] Compiling difference v2.0.0 [INFO] [stderr] Compiling ansi_term v0.11.0 [INFO] [stderr] Compiling rand_core v0.3.1 [INFO] [stderr] Compiling pretty_assertions v0.5.1 [INFO] [stderr] Compiling rand v0.5.6 [INFO] [stderr] Compiling debruijn v0.3.2 (/opt/rustwide/workdir) [INFO] [stdout] warning: use of deprecated item 'msp::simple_scan': Please use the `Scanner` type instead [INFO] [stdout] --> src/msp.rs:586:18 [INFO] [stdout] | [INFO] [stdout] 586 | let s1 = super::simple_scan::<_, Kmer5>(35, &DnaSlice(&mut &v1), &permutation, true); [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(deprecated)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated item 'msp::simple_scan': Please use the `Scanner` type instead [INFO] [stdout] --> src/msp.rs:587:18 [INFO] [stdout] | [INFO] [stdout] 587 | let s2 = super::simple_scan::<_, Kmer5>(35, &DnaSlice(&mut &v2), &permutation, true); [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated item 'msp::simple_scan': Please use the `Scanner` type instead [INFO] [stdout] --> src/msp.rs:394:26 [INFO] [stdout] | [INFO] [stdout] 394 | let slices = super::simple_scan::<_, Kmer8>(k, &DnaSlice(&dna), &permutation, true); [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 3 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 18.34s [INFO] running `Command { std: "docker" "inspect" "f620b2f6210c0c36c6ac2087aaed558504787833dd79a53037560b0faca31fea", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "f620b2f6210c0c36c6ac2087aaed558504787833dd79a53037560b0faca31fea", kill_on_drop: false }` [INFO] [stdout] f620b2f6210c0c36c6ac2087aaed558504787833dd79a53037560b0faca31fea [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-8/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-8/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=0" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env@sha256:a636fd89d022f18117e1dc8fb37a0a009933cdbbe082814857f0e2024962d47c" "/opt/rustwide/cargo-home/bin/cargo" "+1.45.2" "test" "--frozen", kill_on_drop: false }` [INFO] [stdout] 095550ca03b55c2c8ef1c6f1b05bb2afed9bad4d435a9cf671dc29208c8054a2 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "095550ca03b55c2c8ef1c6f1b05bb2afed9bad4d435a9cf671dc29208c8054a2", kill_on_drop: false }` [INFO] [stderr] warning: use of deprecated item 'msp::simple_scan': Please use the `Scanner` type instead [INFO] [stderr] --> src/msp.rs:586:18 [INFO] [stderr] | [INFO] [stderr] 586 | let s1 = super::simple_scan::<_, Kmer5>(35, &DnaSlice(&mut &v1), &permutation, true); [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(deprecated)]` on by default [INFO] [stderr] [INFO] [stderr] warning: use of deprecated item 'msp::simple_scan': Please use the `Scanner` type instead [INFO] [stderr] --> src/msp.rs:587:18 [INFO] [stderr] | [INFO] [stderr] 587 | let s2 = super::simple_scan::<_, Kmer5>(35, &DnaSlice(&mut &v2), &permutation, true); [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated item 'msp::simple_scan': Please use the `Scanner` type instead [INFO] [stderr] --> src/msp.rs:394:26 [INFO] [stderr] | [INFO] [stderr] 394 | let slices = super::simple_scan::<_, Kmer8>(k, &DnaSlice(&dna), &permutation, true); [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: 3 warnings emitted [INFO] [stderr] [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 0.15s [INFO] [stderr] Running /opt/rustwide/target/debug/deps/debruijn-941673d9864771bb [INFO] [stdout] [INFO] [stdout] running 48 tests [INFO] [stdout] test dna_string::tests::test_reverse ... ok [INFO] [stdout] test dna_string::tests::test_from_dna_string ... ok [INFO] [stdout] test dna_string::tests::test_suffix ... ok [INFO] [stdout] test dna_string::tests::test_kmers_too_short ... ok [INFO] [stdout] test dna_string::tests::test_push_bytes ... ok [INFO] [stdout] test dna_string::tests::test_dna_string ... ok [INFO] [stdout] test dna_string::tests::test_kmers ... ok [INFO] [stdout] test dna_string::tests::test_ndiffs ... ok [INFO] [stdout] test bitops_avx2::test::test_convert_bytes_for_debug ... ok [INFO] [stdout] test dna_string::tests::test_prefix ... ok [INFO] [stdout] test bitops_avx2::test::test_convert_bytes_random ... ok [INFO] [stdout] test kmer::tests::test_kmer_4 ... ok [INFO] [stdout] test kmer::tests::test_kmer_5 ... ok [INFO] [stdout] test bitops_avx2::test::test_invalid_bases ... ok [INFO] [stdout] test kmer::tests::test_kmer_6 ... ok [INFO] [stdout] test kmer::tests::test_kmer_10 ... ok [INFO] [stdout] test kmer::tests::test_kmer_12 ... ok [INFO] [stdout] test kmer::tests::test_kmer_14 ... ok [INFO] [stdout] test kmer::tests::test_kmer_15 ... ok [INFO] [stdout] test kmer::tests::test_kmer_16 ... ok [INFO] [stdout] test kmer::tests::test_kmer_8 ... ok [INFO] [stdout] test msp::tests::test1 ... ok [INFO] [stdout] test kmer::tests::test_kmer_20 ... ok [INFO] [stdout] test msp::tests::test_sample ... ok [INFO] [stdout] test kmer::tests::test_kmer_24 ... ok [INFO] [stdout] test kmer::tests::test_kmer_31 ... ok [INFO] [stdout] test msp::tests::test_slice ... ok [INFO] [stdout] test kmer::tests::test_kmer_32 ... ok [INFO] [stdout] test kmer::tests::test_lmer_1_kmer_24 ... ok [INFO] [stdout] test test::tests::degen_seq_asm ... ok [INFO] [stdout] test test::tests::degen_seq_asm_sharded ... ok [INFO] [stdout] test test::tests::simple_kmer_compress ... ok [INFO] [stdout] test test::tests::simple_path_compress ... ok [INFO] [stdout] test kmer::tests::test_kmer_48 ... ok [INFO] [stdout] test test::tests::simple_sharded ... ok [INFO] [stdout] test kmer::tests::test_lmer_1_kmer_16 ... ok [INFO] [stdout] test test::tests::simple_tip_clean ... ok [INFO] [stdout] test kmer::tests::test_lmer_1_kmer_20 ... ok [INFO] [stdout] test kmer::tests::test_kmer_64 ... ok [INFO] [stdout] test kmer::tests::test_lmer_3_kmer_32 ... ok [INFO] [stdout] test kmer::tests::test_lmer_2_kmer_32 ... ok [INFO] [stdout] test kmer::tests::test_lmer_3_kmer_64 ... ok [INFO] [stdout] test kmer::tests::test_lmer_3_kmer_48 ... ok [INFO] [stdout] test test::tests::complex_path_compress ... ok [INFO] [stdout] test test::tests::complex_kmer_compress ... ok [INFO] [stdout] test test::tests::complex_sharded ... ok [INFO] [stdout] test msp::tests::test_msp_scanner ... test msp::tests::test_msp_scanner has been running for over 60 seconds [INFO] [stdout] test test::tests::complex_path_compress_k31 ... test test::tests::complex_path_compress_k31 has been running for over 60 seconds [INFO] [stdout] test test::tests::complex_path_compress_k31 ... ok [ERROR] error running command: no output for 300 seconds [INFO] running `Command { std: "docker" "inspect" "095550ca03b55c2c8ef1c6f1b05bb2afed9bad4d435a9cf671dc29208c8054a2", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "095550ca03b55c2c8ef1c6f1b05bb2afed9bad4d435a9cf671dc29208c8054a2", kill_on_drop: false }` [INFO] [stdout] 095550ca03b55c2c8ef1c6f1b05bb2afed9bad4d435a9cf671dc29208c8054a2