[INFO] updating cached repository https://github.com/eclarke/qgramr [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "-c" "remote.origin.fetch=refs/heads/*:refs/heads/*" "fetch" "origin" "--force" "--prune", kill_on_drop: false }` [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] 797461dce20a90970f9abcc23ec87e72339b200c [INFO] testing eclarke/qgramr against 1.45.2 for beta-1.46-1 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Feclarke%2Fqgramr" "/workspace/builds/worker-9/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-9/source'... [INFO] [stderr] done. [INFO] validating manifest of git repo https://github.com/eclarke/qgramr on toolchain 1.45.2 [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+1.45.2" "read-manifest" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] started tweaking git repo https://github.com/eclarke/qgramr [INFO] finished tweaking git repo https://github.com/eclarke/qgramr [INFO] tweaked toml for git repo https://github.com/eclarke/qgramr written to /workspace/builds/worker-9/source/Cargo.toml [INFO] crate git repo https://github.com/eclarke/qgramr already has a lockfile, it will not be regenerated [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+1.45.2" "fetch" "--locked" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] error: the lock file /workspace/builds/worker-9/source/Cargo.lock needs to be updated but --locked was passed to prevent this [INFO] [stderr] If you want to try to generate the lock file without accessing the network, use the --offline flag. [INFO] the lockfile is outdated, regenerating it [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+1.45.2" "generate-lockfile" "--manifest-path" "Cargo.toml" "-Zno-index-update", kill_on_drop: false }` [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+1.45.2" "fetch" "--locked" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-9/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-9/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=0" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env@sha256:a636fd89d022f18117e1dc8fb37a0a009933cdbbe082814857f0e2024962d47c" "/opt/rustwide/cargo-home/bin/cargo" "+1.45.2" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] eac4fc87652cc13e40ca980048e0275fe64f49fc85558a416b2444c9ce04d80d [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "eac4fc87652cc13e40ca980048e0275fe64f49fc85558a416b2444c9ce04d80d", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "eac4fc87652cc13e40ca980048e0275fe64f49fc85558a416b2444c9ce04d80d", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "eac4fc87652cc13e40ca980048e0275fe64f49fc85558a416b2444c9ce04d80d", kill_on_drop: false }` [INFO] [stdout] eac4fc87652cc13e40ca980048e0275fe64f49fc85558a416b2444c9ce04d80d [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-9/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-9/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=0" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env@sha256:a636fd89d022f18117e1dc8fb37a0a009933cdbbe082814857f0e2024962d47c" "/opt/rustwide/cargo-home/bin/cargo" "+1.45.2" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 43ceaa50a57c1e17310f92b50bcc3026c6e28f303e70d06edf95564528279000 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "43ceaa50a57c1e17310f92b50bcc3026c6e28f303e70d06edf95564528279000", kill_on_drop: false }` [INFO] [stderr] Compiling feature-probe v0.1.1 [INFO] [stderr] Compiling doc-comment v0.3.3 [INFO] [stderr] Compiling ndarray v0.13.1 [INFO] [stderr] Compiling bit-vec v0.6.2 [INFO] [stderr] Compiling bio v0.32.0 [INFO] [stderr] Compiling array-macro v1.0.5 [INFO] [stderr] Compiling custom_derive v0.1.7 [INFO] [stderr] Compiling strum v0.18.0 [INFO] [stderr] Compiling bytecount v0.6.0 [INFO] [stderr] Compiling triple_accel v0.3.2 [INFO] [stderr] Compiling num-complex v0.2.4 [INFO] [stderr] Compiling newtype_derive v0.1.6 [INFO] [stderr] Compiling itertools-num v0.1.3 [INFO] [stderr] Compiling enum-map-derive v0.4.3 [INFO] [stderr] Compiling snafu-derive v0.6.8 [INFO] [stderr] Compiling derive-new v0.5.8 [INFO] [stderr] Compiling strum_macros v0.18.0 [INFO] [stderr] Compiling getset v0.0.9 [INFO] [stderr] Compiling petgraph v0.5.1 [INFO] [stderr] Compiling bstr v0.2.13 [INFO] [stderr] Compiling vec_map v0.8.2 [INFO] [stderr] Compiling multimap v0.8.1 [INFO] [stderr] Compiling bv v0.11.1 [INFO] [stderr] Compiling bit-set v0.5.2 [INFO] [stderr] Compiling statrs v0.12.0 [INFO] [stderr] Compiling csv v1.1.3 [INFO] [stderr] Compiling enum-map v0.6.2 [INFO] [stderr] Compiling bio-types v0.7.0 [INFO] [stderr] Compiling snafu v0.6.8 [INFO] [stderr] Compiling qgramr v0.1.0 (/opt/rustwide/workdir) [INFO] [stdout] error[E0599]: no method named `read` found for struct `bio::io::fasta::Reader` in the current scope [INFO] [stdout] --> src/main.rs:9:12 [INFO] [stdout] | [INFO] [stdout] 9 | reader.read(&mut rec).ok().expect("Error reading record"); [INFO] [stdout] | ^^^^ method not found in `bio::io::fasta::Reader` [INFO] [stdout] | [INFO] [stdout] ::: /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/bio-0.32.0/src/io/fasta.rs:118:8 [INFO] [stdout] | [INFO] [stdout] 118 | fn read(&mut self, record: &mut Record) -> io::Result<()>; [INFO] [stdout] | ---- [INFO] [stdout] | | [INFO] [stdout] | the method is available for `std::boxed::Box>` here [INFO] [stdout] | the method is available for `std::sync::Arc>` here [INFO] [stdout] | the method is available for `std::rc::Rc>` here [INFO] [stdout] | [INFO] [stdout] = help: items from traits can only be used if the trait is in scope [INFO] [stdout] help: the following trait is implemented but not in scope; perhaps add a `use` for it: [INFO] [stdout] | [INFO] [stdout] 2 | use bio::io::fasta::FastaRead; [INFO] [stdout] | [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error[E0599]: no method named `expect` found for reference `&str` in the current scope [INFO] [stdout] --> src/main.rs:15:52 [INFO] [stdout] | [INFO] [stdout] 15 | println!("Building index over {}...", rec.id().expect("")); [INFO] [stdout] | ^^^^^^ method not found in `&str` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error: aborting due to 2 previous errors [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] For more information about this error, try `rustc --explain E0599`. [INFO] [stdout] [INFO] [stderr] error: could not compile `qgramr`. [INFO] [stderr] [INFO] [stderr] To learn more, run the command again with --verbose. [INFO] running `Command { std: "docker" "inspect" "43ceaa50a57c1e17310f92b50bcc3026c6e28f303e70d06edf95564528279000", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "43ceaa50a57c1e17310f92b50bcc3026c6e28f303e70d06edf95564528279000", kill_on_drop: false }` [INFO] [stdout] 43ceaa50a57c1e17310f92b50bcc3026c6e28f303e70d06edf95564528279000