[INFO] updating cached repository https://github.com/TuBieJun/stat_mut_sampleratio [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "-c" "remote.origin.fetch=refs/heads/*:refs/heads/*" "fetch" "origin" "--force" "--prune", kill_on_drop: false }` [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] 0163827d32c94da365c78519e8ce537f7b7a211c [INFO] testing TuBieJun/stat_mut_sampleratio against 1.45.2 for beta-1.46-1 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FTuBieJun%2Fstat_mut_sampleratio" "/workspace/builds/worker-9/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-9/source'... [INFO] [stderr] done. [INFO] validating manifest of git repo https://github.com/TuBieJun/stat_mut_sampleratio on toolchain 1.45.2 [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+1.45.2" "read-manifest" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] started tweaking git repo https://github.com/TuBieJun/stat_mut_sampleratio [INFO] finished tweaking git repo https://github.com/TuBieJun/stat_mut_sampleratio [INFO] tweaked toml for git repo https://github.com/TuBieJun/stat_mut_sampleratio written to /workspace/builds/worker-9/source/Cargo.toml [INFO] crate git repo https://github.com/TuBieJun/stat_mut_sampleratio already has a lockfile, it will not be regenerated [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+1.45.2" "fetch" "--locked" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-9/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-9/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=0" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env@sha256:a636fd89d022f18117e1dc8fb37a0a009933cdbbe082814857f0e2024962d47c" "/opt/rustwide/cargo-home/bin/cargo" "+1.45.2" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 47d40489faa998ced3377e8be05cfcb5db3f2251ed7faa4efd5d2a29f4289f39 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "47d40489faa998ced3377e8be05cfcb5db3f2251ed7faa4efd5d2a29f4289f39", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "47d40489faa998ced3377e8be05cfcb5db3f2251ed7faa4efd5d2a29f4289f39", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "47d40489faa998ced3377e8be05cfcb5db3f2251ed7faa4efd5d2a29f4289f39", kill_on_drop: false }` [INFO] [stdout] 47d40489faa998ced3377e8be05cfcb5db3f2251ed7faa4efd5d2a29f4289f39 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-9/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-9/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=0" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env@sha256:a636fd89d022f18117e1dc8fb37a0a009933cdbbe082814857f0e2024962d47c" "/opt/rustwide/cargo-home/bin/cargo" "+1.45.2" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] e1fa7964333506c4dde6bb09345e4fc3a3c99a2a33c707c50696245ba45ea766 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "e1fa7964333506c4dde6bb09345e4fc3a3c99a2a33c707c50696245ba45ea766", kill_on_drop: false }` [INFO] [stderr] Compiling clap v2.29.2 [INFO] [stderr] Compiling stat_germline_pos v0.1.0 (/opt/rustwide/workdir) [INFO] [stdout] warning: unused import: `SubCommand` [INFO] [stdout] --> src/main.rs:9:22 [INFO] [stdout] | [INFO] [stdout] 9 | use clap::{Arg, App, SubCommand}; [INFO] [stdout] | ^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/main.rs:18:9 [INFO] [stdout] | [INFO] [stdout] 18 | let mut f = File::open(vcf_l) [INFO] [stdout] | ----^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_mut)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/main.rs:40:21 [INFO] [stdout] | [INFO] [stdout] 40 | let mut dp_info:Vec<&str>; [INFO] [stdout] | ----^^^^^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/main.rs:58:25 [INFO] [stdout] | [INFO] [stdout] 58 | let mut n_index:usize; [INFO] [stdout] | ----^^^^^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `D_germline` should have a snake case name [INFO] [stdout] --> src/main.rs:13:13 [INFO] [stdout] | [INFO] [stdout] 13 | D_germline:&mut HashMap>) -> u32 { [INFO] [stdout] | ^^^^^^^^^^ help: convert the identifier to snake case: `d_germline` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(non_snake_case)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `D_germline` should have a snake case name [INFO] [stdout] --> src/main.rs:96:53 [INFO] [stdout] | [INFO] [stdout] 96 | fn out_info(out_file:&str, panel_list:&Vec, D_germline:&HashMap>, sample_num_list:&Vec) { [INFO] [stdout] | ^^^^^^^^^^ help: convert the identifier to snake case: `d_germline` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused `std::result::Result` that must be used [INFO] [stdout] --> src/main.rs:100:5 [INFO] [stdout] | [INFO] [stdout] 100 | writer.write(header.as_bytes()); [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_must_use)]` on by default [INFO] [stdout] = note: this `Result` may be an `Err` variant, which should be handled [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused `std::result::Result` that must be used [INFO] [stdout] --> src/main.rs:112:9 [INFO] [stdout] | [INFO] [stdout] 112 | writer.write(info.as_bytes()); [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: this `Result` may be an `Err` variant, which should be handled [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `D_germline` should have a snake case name [INFO] [stdout] --> src/main.rs:155:13 [INFO] [stdout] | [INFO] [stdout] 155 | let mut D_germline:HashMap> = HashMap::new(); [INFO] [stdout] | ^^^^^^^^^^ help: convert the identifier to snake case: `d_germline` [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 12.82s [INFO] [stdout] warning: 9 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] running `Command { std: "docker" "inspect" "e1fa7964333506c4dde6bb09345e4fc3a3c99a2a33c707c50696245ba45ea766", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "e1fa7964333506c4dde6bb09345e4fc3a3c99a2a33c707c50696245ba45ea766", kill_on_drop: false }` [INFO] [stdout] e1fa7964333506c4dde6bb09345e4fc3a3c99a2a33c707c50696245ba45ea766 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-9/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-9/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=0" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env@sha256:a636fd89d022f18117e1dc8fb37a0a009933cdbbe082814857f0e2024962d47c" "/opt/rustwide/cargo-home/bin/cargo" "+1.45.2" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }` [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] [stdout] 30204dc6aa566082c4457acd4e013d7e6ed6e84ffa69b9050d5e567b3f6a5fbc [INFO] running `Command { std: "docker" "start" "-a" "30204dc6aa566082c4457acd4e013d7e6ed6e84ffa69b9050d5e567b3f6a5fbc", kill_on_drop: false }` [INFO] [stderr] Compiling stat_germline_pos v0.1.0 (/opt/rustwide/workdir) [INFO] [stdout] warning: unused import: `SubCommand` [INFO] [stdout] --> src/main.rs:9:22 [INFO] [stdout] | [INFO] [stdout] 9 | use clap::{Arg, App, SubCommand}; [INFO] [stdout] | ^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/main.rs:18:9 [INFO] [stdout] | [INFO] [stdout] 18 | let mut f = File::open(vcf_l) [INFO] [stdout] | ----^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_mut)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/main.rs:40:21 [INFO] [stdout] | [INFO] [stdout] 40 | let mut dp_info:Vec<&str>; [INFO] [stdout] | ----^^^^^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/main.rs:58:25 [INFO] [stdout] | [INFO] [stdout] 58 | let mut n_index:usize; [INFO] [stdout] | ----^^^^^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `D_germline` should have a snake case name [INFO] [stdout] --> src/main.rs:13:13 [INFO] [stdout] | [INFO] [stdout] 13 | D_germline:&mut HashMap>) -> u32 { [INFO] [stdout] | ^^^^^^^^^^ help: convert the identifier to snake case: `d_germline` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(non_snake_case)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `D_germline` should have a snake case name [INFO] [stdout] --> src/main.rs:96:53 [INFO] [stdout] | [INFO] [stdout] 96 | fn out_info(out_file:&str, panel_list:&Vec, D_germline:&HashMap>, sample_num_list:&Vec) { [INFO] [stdout] | ^^^^^^^^^^ help: convert the identifier to snake case: `d_germline` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused `std::result::Result` that must be used [INFO] [stdout] --> src/main.rs:100:5 [INFO] [stdout] | [INFO] [stdout] 100 | writer.write(header.as_bytes()); [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_must_use)]` on by default [INFO] [stdout] = note: this `Result` may be an `Err` variant, which should be handled [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused `std::result::Result` that must be used [INFO] [stdout] --> src/main.rs:112:9 [INFO] [stdout] | [INFO] [stdout] 112 | writer.write(info.as_bytes()); [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: this `Result` may be an `Err` variant, which should be handled [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `D_germline` should have a snake case name [INFO] [stdout] --> src/main.rs:155:13 [INFO] [stdout] | [INFO] [stdout] 155 | let mut D_germline:HashMap> = HashMap::new(); [INFO] [stdout] | ^^^^^^^^^^ help: convert the identifier to snake case: `d_germline` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 9 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 0.95s [INFO] running `Command { std: "docker" "inspect" "30204dc6aa566082c4457acd4e013d7e6ed6e84ffa69b9050d5e567b3f6a5fbc", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "30204dc6aa566082c4457acd4e013d7e6ed6e84ffa69b9050d5e567b3f6a5fbc", kill_on_drop: false }` [INFO] [stdout] 30204dc6aa566082c4457acd4e013d7e6ed6e84ffa69b9050d5e567b3f6a5fbc [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-9/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-9/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=0" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env@sha256:a636fd89d022f18117e1dc8fb37a0a009933cdbbe082814857f0e2024962d47c" "/opt/rustwide/cargo-home/bin/cargo" "+1.45.2" "test" "--frozen", kill_on_drop: false }` [INFO] [stdout] 2b64e5b899ea544208f6f9638b8a7eb53e33852690125fbb0a151a7cecb01851 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "2b64e5b899ea544208f6f9638b8a7eb53e33852690125fbb0a151a7cecb01851", kill_on_drop: false }` [INFO] [stderr] warning: unused import: `SubCommand` [INFO] [stderr] --> src/main.rs:9:22 [INFO] [stderr] | [INFO] [stderr] 9 | use clap::{Arg, App, SubCommand}; [INFO] [stderr] | ^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(unused_imports)]` on by default [INFO] [stderr] [INFO] [stderr] warning: variable does not need to be mutable [INFO] [stderr] --> src/main.rs:18:9 [INFO] [stderr] | [INFO] [stderr] 18 | let mut f = File::open(vcf_l) [INFO] [stderr] | ----^ [INFO] [stderr] | | [INFO] [stderr] | help: remove this `mut` [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(unused_mut)]` on by default [INFO] [stderr] [INFO] [stderr] warning: variable does not need to be mutable [INFO] [stderr] --> src/main.rs:40:21 [INFO] [stderr] | [INFO] [stderr] 40 | let mut dp_info:Vec<&str>; [INFO] [stderr] | ----^^^^^^^ [INFO] [stderr] | | [INFO] [stderr] | help: remove this `mut` [INFO] [stderr] [INFO] [stderr] warning: variable does not need to be mutable [INFO] [stderr] --> src/main.rs:58:25 [INFO] [stderr] | [INFO] [stderr] 58 | let mut n_index:usize; [INFO] [stderr] | ----^^^^^^^ [INFO] [stderr] | | [INFO] [stderr] | help: remove this `mut` [INFO] [stderr] [INFO] [stderr] warning: variable `D_germline` should have a snake case name [INFO] [stderr] --> src/main.rs:13:13 [INFO] [stderr] | [INFO] [stderr] 13 | D_germline:&mut HashMap>) -> u32 { [INFO] [stderr] | ^^^^^^^^^^ help: convert the identifier to snake case: `d_germline` [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(non_snake_case)]` on by default [INFO] [stderr] [INFO] [stderr] warning: variable `D_germline` should have a snake case name [INFO] [stderr] --> src/main.rs:96:53 [INFO] [stderr] | [INFO] [stderr] 96 | fn out_info(out_file:&str, panel_list:&Vec, D_germline:&HashMap>, sample_num_list:&Vec) { [INFO] [stderr] | ^^^^^^^^^^ help: convert the identifier to snake case: `d_germline` [INFO] [stderr] [INFO] [stderr] warning: unused `std::result::Result` that must be used [INFO] [stderr] --> src/main.rs:100:5 [INFO] [stderr] | [INFO] [stderr] 100 | writer.write(header.as_bytes()); [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(unused_must_use)]` on by default [INFO] [stderr] = note: this `Result` may be an `Err` variant, which should be handled [INFO] [stderr] [INFO] [stderr] warning: unused `std::result::Result` that must be used [INFO] [stderr] --> src/main.rs:112:9 [INFO] [stderr] | [INFO] [stderr] 112 | writer.write(info.as_bytes()); [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: this `Result` may be an `Err` variant, which should be handled [INFO] [stderr] [INFO] [stderr] warning: variable `D_germline` should have a snake case name [INFO] [stderr] --> src/main.rs:155:13 [INFO] [stderr] | [INFO] [stderr] 155 | let mut D_germline:HashMap> = HashMap::new(); [INFO] [stderr] | ^^^^^^^^^^ help: convert the identifier to snake case: `d_germline` [INFO] [stderr] [INFO] [stderr] warning: 9 warnings emitted [INFO] [stderr] [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 0.08s [INFO] [stdout] [INFO] [stderr] Running /opt/rustwide/target/debug/deps/stat_germline_pos-68235abf89d850cf [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out [INFO] [stdout] [INFO] running `Command { std: "docker" "inspect" "2b64e5b899ea544208f6f9638b8a7eb53e33852690125fbb0a151a7cecb01851", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "2b64e5b899ea544208f6f9638b8a7eb53e33852690125fbb0a151a7cecb01851", kill_on_drop: false }` [INFO] [stdout] 2b64e5b899ea544208f6f9638b8a7eb53e33852690125fbb0a151a7cecb01851