[INFO] crate wham 0.9.6 is already in cache [INFO] testing wham-0.9.6 against beta-2020-06-03 for beta-1.45-1 [INFO] extracting crate wham 0.9.6 into /workspace/builds/worker-5/source [INFO] validating manifest of crates.io crate wham 0.9.6 on toolchain beta-2020-06-03 [INFO] running `"/workspace/cargo-home/bin/cargo" "+beta-2020-06-03" "read-manifest" "--manifest-path" "Cargo.toml"` [INFO] started tweaking crates.io crate wham 0.9.6 [INFO] finished tweaking crates.io crate wham 0.9.6 [INFO] tweaked toml for crates.io crate wham 0.9.6 written to /workspace/builds/worker-5/source/Cargo.toml [INFO] crate crates.io crate wham 0.9.6 already has a lockfile, it will not be regenerated [INFO] running `"/workspace/cargo-home/bin/cargo" "+beta-2020-06-03" "fetch" "--locked" "--manifest-path" "Cargo.toml"` [INFO] running `"docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=0" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2020-06-03" "build" "--frozen"` [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] [stdout] 4777eebc172b09eb6b6d8fbfaf22737fa0f551ad9542afba61c2bb2b84a21991 [INFO] running `"docker" "start" "-a" "4777eebc172b09eb6b6d8fbfaf22737fa0f551ad9542afba61c2bb2b84a21991"` [INFO] [stderr] sudo: setrlimit(RLIMIT_CORE): Operation not permitted [INFO] [stderr] Compiling c_vec v1.0.12 [INFO] [stderr] Compiling GSL v1.1.0 [INFO] [stderr] Compiling error-chain v0.12.2 [INFO] [stderr] Compiling backtrace-sys v0.1.33 [INFO] [stderr] Compiling rand v0.5.6 [INFO] [stderr] Compiling clap v2.33.0 [INFO] [stderr] Compiling backtrace v0.3.45 [INFO] [stderr] Compiling wham v0.9.6 (/opt/rustwide/workdir) [INFO] [stderr] warning: unused `std::result::Result` that must be used [INFO] [stderr] --> src/lib.rs:221:2 [INFO] [stderr] | [INFO] [stderr] 221 | writeln!(lock, "# PMF"); [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(unused_must_use)]` on by default [INFO] [stderr] = note: this `Result` may be an `Err` variant, which should be handled [INFO] [stderr] = note: this warning originates in a macro (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stderr] [INFO] [stderr] warning: unused `std::result::Result` that must be used [INFO] [stderr] --> src/lib.rs:222:2 [INFO] [stderr] | [INFO] [stderr] 222 | writeln!(lock, "#bin\t\tFree Energy\t\t+/-\t\tP(x)\t\t+/-"); [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: this `Result` may be an `Err` variant, which should be handled [INFO] [stderr] = note: this warning originates in a macro (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stderr] [INFO] [stderr] warning: unused `std::result::Result` that must be used [INFO] [stderr] --> src/lib.rs:224:3 [INFO] [stderr] | [INFO] [stderr] 224 | writeln!(lock, "{:9.5}\t{:9.5}\t{:9.5}\t{:9.5}\t{:9.5}", bin, A[bin], A_std[bin], P[bin], P_std[bin]); [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: this `Result` may be an `Err` variant, which should be handled [INFO] [stderr] = note: this warning originates in a macro (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stderr] [INFO] [stderr] warning: unused `std::result::Result` that must be used [INFO] [stderr] --> src/lib.rs:226:2 [INFO] [stderr] | [INFO] [stderr] 226 | writeln!(lock, "# Bias offsets"); [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: this `Result` may be an `Err` variant, which should be handled [INFO] [stderr] = note: this warning originates in a macro (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stderr] [INFO] [stderr] warning: unused `std::result::Result` that must be used [INFO] [stderr] --> src/lib.rs:227:2 [INFO] [stderr] | [INFO] [stderr] 227 | writeln!(lock, "#Window\t\tF\t\tF_prev"); [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: this `Result` may be an `Err` variant, which should be handled [INFO] [stderr] = note: this warning originates in a macro (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stderr] [INFO] [stderr] warning: unused `std::result::Result` that must be used [INFO] [stderr] --> src/lib.rs:229:3 [INFO] [stderr] | [INFO] [stderr] 229 | writeln!(lock, "{}\t{:9.5}\t{:8.8}", window, F[window], (F[window]-F_prev[window]).abs()); [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: this `Result` may be an `Err` variant, which should be handled [INFO] [stderr] = note: this warning originates in a macro (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stderr] [INFO] [stderr] warning: unused `std::result::Result` that must be used [INFO] [stderr] --> src/io.rs:184:5 [INFO] [stderr] | [INFO] [stderr] 184 | writeln!(buf, "#{} {} {} {} {}", header, "Free Energy", "+/-", "Probability", "+/-"); [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: this `Result` may be an `Err` variant, which should be handled [INFO] [stderr] = note: this warning originates in a macro (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stderr] [INFO] [stderr] warning: 7 warnings emitted [INFO] [stderr] [INFO] [stderr] error: linking with `cc` failed: exit code: 1 [INFO] [stderr] | [INFO] [stderr] = note: "cc" "-Wl,--as-needed" "-Wl,-z,noexecstack" "-m64" "-L" "/opt/rustwide/rustup-home/toolchains/beta-2020-06-03-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib" "/opt/rustwide/target/debug/deps/wham-7cc6359f556af049.wham.6b5e5i0z-cgu.0.rcgu.o" "/opt/rustwide/target/debug/deps/wham-7cc6359f556af049.wham.6b5e5i0z-cgu.1.rcgu.o" "/opt/rustwide/target/debug/deps/wham-7cc6359f556af049.wham.6b5e5i0z-cgu.10.rcgu.o" "/opt/rustwide/target/debug/deps/wham-7cc6359f556af049.wham.6b5e5i0z-cgu.11.rcgu.o" "/opt/rustwide/target/debug/deps/wham-7cc6359f556af049.wham.6b5e5i0z-cgu.12.rcgu.o" "/opt/rustwide/target/debug/deps/wham-7cc6359f556af049.wham.6b5e5i0z-cgu.13.rcgu.o" "/opt/rustwide/target/debug/deps/wham-7cc6359f556af049.wham.6b5e5i0z-cgu.14.rcgu.o" "/opt/rustwide/target/debug/deps/wham-7cc6359f556af049.wham.6b5e5i0z-cgu.15.rcgu.o" "/opt/rustwide/target/debug/deps/wham-7cc6359f556af049.wham.6b5e5i0z-cgu.2.rcgu.o" "/opt/rustwide/target/debug/deps/wham-7cc6359f556af049.wham.6b5e5i0z-cgu.3.rcgu.o" "/opt/rustwide/target/debug/deps/wham-7cc6359f556af049.wham.6b5e5i0z-cgu.4.rcgu.o" "/opt/rustwide/target/debug/deps/wham-7cc6359f556af049.wham.6b5e5i0z-cgu.5.rcgu.o" "/opt/rustwide/target/debug/deps/wham-7cc6359f556af049.wham.6b5e5i0z-cgu.6.rcgu.o" "/opt/rustwide/target/debug/deps/wham-7cc6359f556af049.wham.6b5e5i0z-cgu.7.rcgu.o" "/opt/rustwide/target/debug/deps/wham-7cc6359f556af049.wham.6b5e5i0z-cgu.8.rcgu.o" "/opt/rustwide/target/debug/deps/wham-7cc6359f556af049.wham.6b5e5i0z-cgu.9.rcgu.o" "-o" "/opt/rustwide/target/debug/deps/wham-7cc6359f556af049" "/opt/rustwide/target/debug/deps/wham-7cc6359f556af049.28mi3hjl5n759kcr.rcgu.o" "-Wl,--gc-sections" "-pie" "-Wl,-zrelro" "-Wl,-znow" "-nodefaultlibs" "-L" "/opt/rustwide/target/debug/deps" "-L" "/opt/rustwide/target/debug/build/backtrace-sys-854ff70892160407/out" "-L" "/opt/rustwide/rustup-home/toolchains/beta-2020-06-03-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib" "-Wl,-Bstatic" "/opt/rustwide/target/debug/deps/libclap-3732d9a5ee3cf27c.rlib" "/opt/rustwide/target/debug/deps/libyaml_rust-f8177ab548caace6.rlib" "/opt/rustwide/target/debug/deps/libvec_map-423d6945ab3c8d98.rlib" "/opt/rustwide/target/debug/deps/libtextwrap-7ce917c1e40e3b24.rlib" "/opt/rustwide/target/debug/deps/libunicode_width-f2de9f6717fae86f.rlib" "/opt/rustwide/target/debug/deps/libstrsim-7ef4ee0940d816f7.rlib" "/opt/rustwide/target/debug/deps/libbitflags-a637fa8d282392d5.rlib" "/opt/rustwide/target/debug/deps/libatty-95da4ac52f5d7eaf.rlib" "/opt/rustwide/target/debug/deps/libansi_term-5f50d48905eb9d7a.rlib" "/opt/rustwide/target/debug/deps/libwham-04c5fe3423fec875.rlib" "/opt/rustwide/target/debug/deps/librayon-7f5a27858ccab5c5.rlib" "/opt/rustwide/target/debug/deps/librayon_core-641df211ac8d130b.rlib" "/opt/rustwide/target/debug/deps/libnum_cpus-cd7908347908c550.rlib" "/opt/rustwide/target/debug/deps/libcrossbeam_queue-75bbc5e15dc0ed21.rlib" "/opt/rustwide/target/debug/deps/libcrossbeam_deque-325f4a95c51fa41d.rlib" "/opt/rustwide/target/debug/deps/libcrossbeam_epoch-b17536cbe01cee49.rlib" "/opt/rustwide/target/debug/deps/libscopeguard-6e82e76ec854833d.rlib" "/opt/rustwide/target/debug/deps/libmemoffset-5ac251adb1250148.rlib" "/opt/rustwide/target/debug/deps/libcrossbeam_utils-76f5c6d637dd14b0.rlib" "/opt/rustwide/target/debug/deps/liblazy_static-36bd8bbfaaa85bd1.rlib" "/opt/rustwide/target/debug/deps/libmaybe_uninit-c59d4d0642fbf7ab.rlib" "/opt/rustwide/target/debug/deps/libeither-667bb5f36f496548.rlib" "/opt/rustwide/target/debug/deps/librgsl-2eef814f4b024d14.rlib" "/opt/rustwide/target/debug/deps/libc_vec-98bc4417a7d1df72.rlib" "/opt/rustwide/target/debug/deps/librand-8cf83820cde8bf3f.rlib" "/opt/rustwide/target/debug/deps/librand_core-e31c4a8daf1551c2.rlib" "/opt/rustwide/target/debug/deps/librand_core-fc3b85f002e2a6f9.rlib" "/opt/rustwide/target/debug/deps/liberror_chain-3974a053ff7a02b1.rlib" "/opt/rustwide/target/debug/deps/libbacktrace-1a855e72ffd18e2a.rlib" "/opt/rustwide/target/debug/deps/libbacktrace_sys-ce0bd204d32be4b7.rlib" "/opt/rustwide/target/debug/deps/liblibc-144dd5fd09fc18d4.rlib" "/opt/rustwide/target/debug/deps/libcfg_if-0d7329a98a9ffead.rlib" "/opt/rustwide/target/debug/deps/librustc_demangle-96825a490c3cad52.rlib" "-Wl,--start-group" "/opt/rustwide/rustup-home/toolchains/beta-2020-06-03-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/libstd-44f8eb3d0b2fad61.rlib" "/opt/rustwide/rustup-home/toolchains/beta-2020-06-03-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/libpanic_unwind-abc626f09920d361.rlib" "/opt/rustwide/rustup-home/toolchains/beta-2020-06-03-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/libhashbrown-546e83c8973f1a65.rlib" "/opt/rustwide/rustup-home/toolchains/beta-2020-06-03-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/librustc_std_workspace_alloc-12768dfc68674934.rlib" "/opt/rustwide/rustup-home/toolchains/beta-2020-06-03-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/libbacktrace-e06867e4497f2ee8.rlib" "/opt/rustwide/rustup-home/toolchains/beta-2020-06-03-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/libbacktrace_sys-cbc579f43f6df57b.rlib" "/opt/rustwide/rustup-home/toolchains/beta-2020-06-03-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/librustc_demangle-7abd6d5a7ebf9a23.rlib" "/opt/rustwide/rustup-home/toolchains/beta-2020-06-03-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/libunwind-46423c7bc03bd327.rlib" "/opt/rustwide/rustup-home/toolchains/beta-2020-06-03-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/libcfg_if-fc3773ed7bc68f07.rlib" "/opt/rustwide/rustup-home/toolchains/beta-2020-06-03-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/liblibc-9cdc98176efd27e2.rlib" "/opt/rustwide/rustup-home/toolchains/beta-2020-06-03-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/liballoc-02d88502a763e06b.rlib" "/opt/rustwide/rustup-home/toolchains/beta-2020-06-03-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/librustc_std_workspace_core-8cdc9d38dd6cd3ce.rlib" "/opt/rustwide/rustup-home/toolchains/beta-2020-06-03-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/libcore-336f7d63e72901ef.rlib" "-Wl,--end-group" "/opt/rustwide/rustup-home/toolchains/beta-2020-06-03-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/libcompiler_builtins-57917b1be5233117.rlib" "-Wl,-Bdynamic" "-lutil" "-ldl" "-lutil" "-ldl" "-lrt" "-lpthread" "-lgcc_s" "-lc" "-lm" "-lrt" "-lpthread" "-lutil" "-ldl" "-lutil" [INFO] [stderr] = note: /usr/bin/ld: /opt/rustwide/target/debug/deps/librgsl-2eef814f4b024d14.rlib(rgsl-2eef814f4b024d14.rgsl.6thrplwi-cgu.8.rcgu.o): in function `rgsl::statistics::sd': [INFO] [stderr] /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/GSL-1.1.0/src/statistics.rs:85: undefined reference to `gsl_stats_sd' [INFO] [stderr] collect2: error: ld returned 1 exit status [INFO] [stderr] [INFO] [stderr] [INFO] [stderr] error: aborting due to previous error [INFO] [stderr] [INFO] [stderr] error: could not compile `wham`. [INFO] [stderr] [INFO] [stderr] To learn more, run the command again with --verbose. [INFO] running `"docker" "inspect" "4777eebc172b09eb6b6d8fbfaf22737fa0f551ad9542afba61c2bb2b84a21991"` [INFO] running `"docker" "rm" "-f" "4777eebc172b09eb6b6d8fbfaf22737fa0f551ad9542afba61c2bb2b84a21991"` [INFO] [stdout] 4777eebc172b09eb6b6d8fbfaf22737fa0f551ad9542afba61c2bb2b84a21991