[INFO] crate umgap 0.3.3 is already in cache [INFO] testing umgap-0.3.3 against beta-2020-06-03 for beta-1.45-1 [INFO] extracting crate umgap 0.3.3 into /workspace/builds/worker-4/source [INFO] validating manifest of crates.io crate umgap 0.3.3 on toolchain beta-2020-06-03 [INFO] running `"/workspace/cargo-home/bin/cargo" "+beta-2020-06-03" "read-manifest" "--manifest-path" "Cargo.toml"` [INFO] started tweaking crates.io crate umgap 0.3.3 [INFO] finished tweaking crates.io crate umgap 0.3.3 [INFO] tweaked toml for crates.io crate umgap 0.3.3 written to /workspace/builds/worker-4/source/Cargo.toml [INFO] running `"/workspace/cargo-home/bin/cargo" "+beta-2020-06-03" "generate-lockfile" "--manifest-path" "Cargo.toml" "-Zno-index-update"` [INFO] running `"/workspace/cargo-home/bin/cargo" "+beta-2020-06-03" "fetch" "--locked" "--manifest-path" "Cargo.toml"` [INFO] running `"docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=0" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2020-06-03" "build" "--frozen"` [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] [stdout] cee76d843809c561074937120ca0655f71e008e09c96b96d9d5274d005494399 [INFO] running `"docker" "start" "-a" "cee76d843809c561074937120ca0655f71e008e09c96b96d9d5274d005494399"` [INFO] [stderr] sudo: setrlimit(RLIMIT_CORE): Operation not permitted [INFO] [stderr] Compiling strum v0.11.0 [INFO] [stderr] Compiling bstr v0.2.13 [INFO] [stderr] Compiling structopt-derive v0.2.18 [INFO] [stderr] Compiling strum_macros v0.11.0 [INFO] [stderr] Compiling fst v0.3.5 [INFO] [stderr] Compiling csv v1.1.3 [INFO] [stderr] Compiling structopt v0.2.18 [INFO] [stderr] Compiling umgap v0.3.3 (/opt/rustwide/workdir) [INFO] [stderr] warning: use of deprecated item 'core::str::::trim_right': superseded by `trim_end` [INFO] [stderr] --> src/taxon.rs:88:34 [INFO] [stderr] | [INFO] [stderr] 88 | let split: Vec<&str> = s.trim_right().split('\t').collect(); [INFO] [stderr] | ^^^^^^^^^^ help: replace the use of the deprecated item: `trim_end` [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(deprecated)]` on by default [INFO] [stderr] [INFO] [stderr] warning: this method call currently resolves to `<&[T; N] as IntoIterator>::into_iter` (due to autoref coercions), but that might change in the future when `IntoIterator` impls for arrays are added. [INFO] [stderr] --> src/dna/translation.rs:158:65 [INFO] [stderr] | [INFO] [stderr] 158 | for (i, name) in ["AAs", "Starts", "Base1", "Base2", "Base3"].into_iter() [INFO] [stderr] | ^^^^^^^^^ help: use `.iter()` instead of `.into_iter()` to avoid ambiguity: `iter` [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(array_into_iter)]` on by default [INFO] [stderr] = warning: this was previously accepted by the compiler but is being phased out; it will become a hard error in a future release! [INFO] [stderr] = note: for more information, see issue #66145 [INFO] [stderr] [INFO] [stderr] warning: 2 warnings emitted [INFO] [stderr] [INFO] [stderr] warning: use of deprecated item 'try': use the `?` operator instead [INFO] [stderr] --> src/main.rs:631:3 [INFO] [stderr] | [INFO] [stderr] 631 | try!(writer.write_record(fasta::Record { [INFO] [stderr] | ^^^ [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(deprecated)]` on by default [INFO] [stderr] [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/main.rs:284:29 [INFO] [stderr] | [INFO] [stderr] 284 | let aggregator: Result> = match (args.method, args.strategy) { [INFO] [stderr] | ^^^^^^^^^^^^^^^ help: use `dyn`: `dyn agg::Aggregator` [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(bare_trait_objects)]` on by default [INFO] [stderr] [INFO] [stderr] warning: 2 warnings emitted [INFO] [stderr] [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 22.52s [INFO] running `"docker" "inspect" "cee76d843809c561074937120ca0655f71e008e09c96b96d9d5274d005494399"` [INFO] running `"docker" "rm" "-f" "cee76d843809c561074937120ca0655f71e008e09c96b96d9d5274d005494399"` [INFO] [stdout] cee76d843809c561074937120ca0655f71e008e09c96b96d9d5274d005494399 [INFO] running `"docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=0" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2020-06-03" "test" "--frozen" "--no-run"` [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] [stdout] 8a65fe0ca6f7068886f8b3e82eeac916d9e1cf4d770ef76e9c94262d4c497bd3 [INFO] running `"docker" "start" "-a" "8a65fe0ca6f7068886f8b3e82eeac916d9e1cf4d770ef76e9c94262d4c497bd3"` [INFO] [stderr] sudo: setrlimit(RLIMIT_CORE): Operation not permitted [INFO] [stderr] Compiling umgap v0.3.3 (/opt/rustwide/workdir) [INFO] [stderr] warning: use of deprecated item 'core::str::::trim_right': superseded by `trim_end` [INFO] [stderr] --> src/taxon.rs:88:34 [INFO] [stderr] | [INFO] [stderr] 88 | let split: Vec<&str> = s.trim_right().split('\t').collect(); [INFO] [stderr] | ^^^^^^^^^^ help: replace the use of the deprecated item: `trim_end` [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(deprecated)]` on by default [INFO] [stderr] [INFO] [stderr] warning: this method call currently resolves to `<&[T; N] as IntoIterator>::into_iter` (due to autoref coercions), but that might change in the future when `IntoIterator` impls for arrays are added. [INFO] [stderr] --> src/dna/translation.rs:158:65 [INFO] [stderr] | [INFO] [stderr] 158 | for (i, name) in ["AAs", "Starts", "Base1", "Base2", "Base3"].into_iter() [INFO] [stderr] | ^^^^^^^^^ help: use `.iter()` instead of `.into_iter()` to avoid ambiguity: `iter` [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(array_into_iter)]` on by default [INFO] [stderr] = warning: this was previously accepted by the compiler but is being phased out; it will become a hard error in a future release! [INFO] [stderr] = note: for more information, see issue #66145 [INFO] [stderr] [INFO] [stderr] warning: 2 warnings emitted [INFO] [stderr] [INFO] [stderr] warning: use of deprecated item 'try': use the `?` operator instead [INFO] [stderr] --> src/main.rs:631:3 [INFO] [stderr] | [INFO] [stderr] 631 | try!(writer.write_record(fasta::Record { [INFO] [stderr] | ^^^ [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(deprecated)]` on by default [INFO] [stderr] [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/main.rs:284:29 [INFO] [stderr] | [INFO] [stderr] 284 | let aggregator: Result> = match (args.method, args.strategy) { [INFO] [stderr] | ^^^^^^^^^^^^^^^ help: use `dyn`: `dyn agg::Aggregator` [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(bare_trait_objects)]` on by default [INFO] [stderr] [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/agg.rs:58:47 [INFO] [stderr] | [INFO] [stderr] 58 | fn aggregators(by_id: &TaxonList) -> Vec> { [INFO] [stderr] | ^^^^^^^^^^ help: use `dyn`: `dyn Aggregator` [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(bare_trait_objects)]` on by default [INFO] [stderr] [INFO] [stderr] warning: 2 warnings emitted [INFO] [stderr] [INFO] [stderr] warning: use of deprecated item 'core::str::::trim_right': superseded by `trim_end` [INFO] [stderr] --> src/taxon.rs:88:34 [INFO] [stderr] | [INFO] [stderr] 88 | let split: Vec<&str> = s.trim_right().split('\t').collect(); [INFO] [stderr] | ^^^^^^^^^^ help: replace the use of the deprecated item: `trim_end` [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(deprecated)]` on by default [INFO] [stderr] [INFO] [stderr] warning: this method call currently resolves to `<&[T; N] as IntoIterator>::into_iter` (due to autoref coercions), but that might change in the future when `IntoIterator` impls for arrays are added. [INFO] [stderr] --> src/dna/translation.rs:158:65 [INFO] [stderr] | [INFO] [stderr] 158 | for (i, name) in ["AAs", "Starts", "Base1", "Base2", "Base3"].into_iter() [INFO] [stderr] | ^^^^^^^^^ help: use `.iter()` instead of `.into_iter()` to avoid ambiguity: `iter` [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(array_into_iter)]` on by default [INFO] [stderr] = warning: this was previously accepted by the compiler but is being phased out; it will become a hard error in a future release! [INFO] [stderr] = note: for more information, see issue #66145 [INFO] [stderr] [INFO] [stderr] warning: 3 warnings emitted [INFO] [stderr] [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 7.14s [INFO] running `"docker" "inspect" "8a65fe0ca6f7068886f8b3e82eeac916d9e1cf4d770ef76e9c94262d4c497bd3"` [INFO] running `"docker" "rm" "-f" "8a65fe0ca6f7068886f8b3e82eeac916d9e1cf4d770ef76e9c94262d4c497bd3"` [INFO] [stdout] 8a65fe0ca6f7068886f8b3e82eeac916d9e1cf4d770ef76e9c94262d4c497bd3 [INFO] running `"docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=0" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2020-06-03" "test" "--frozen"` [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] [stdout] a140d27bdfd42ce03e8ba4aa887485627b1655978864882d089d06026350ec3f [INFO] running `"docker" "start" "-a" "a140d27bdfd42ce03e8ba4aa887485627b1655978864882d089d06026350ec3f"` [INFO] [stderr] sudo: setrlimit(RLIMIT_CORE): Operation not permitted [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/agg.rs:58:47 [INFO] [stderr] | [INFO] [stderr] 58 | fn aggregators(by_id: &TaxonList) -> Vec> { [INFO] [stderr] | ^^^^^^^^^^ help: use `dyn`: `dyn Aggregator` [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(bare_trait_objects)]` on by default [INFO] [stderr] [INFO] [stderr] warning: use of deprecated item 'core::str::::trim_right': superseded by `trim_end` [INFO] [stderr] --> src/taxon.rs:88:34 [INFO] [stderr] | [INFO] [stderr] 88 | let split: Vec<&str> = s.trim_right().split('\t').collect(); [INFO] [stderr] | ^^^^^^^^^^ help: replace the use of the deprecated item: `trim_end` [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(deprecated)]` on by default [INFO] [stderr] [INFO] [stderr] warning: this method call currently resolves to `<&[T; N] as IntoIterator>::into_iter` (due to autoref coercions), but that might change in the future when `IntoIterator` impls for arrays are added. [INFO] [stderr] --> src/dna/translation.rs:158:65 [INFO] [stderr] | [INFO] [stderr] 158 | for (i, name) in ["AAs", "Starts", "Base1", "Base2", "Base3"].into_iter() [INFO] [stderr] | ^^^^^^^^^ help: use `.iter()` instead of `.into_iter()` to avoid ambiguity: `iter` [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(array_into_iter)]` on by default [INFO] [stderr] = warning: this was previously accepted by the compiler but is being phased out; it will become a hard error in a future release! [INFO] [stderr] = note: for more information, see issue #66145 [INFO] [stderr] [INFO] [stderr] warning: 3 warnings emitted [INFO] [stderr] [INFO] [stderr] warning: use of deprecated item 'core::str::::trim_right': superseded by `trim_end` [INFO] [stderr] --> src/taxon.rs:88:34 [INFO] [stderr] | [INFO] [stderr] 88 | let split: Vec<&str> = s.trim_right().split('\t').collect(); [INFO] [stderr] | ^^^^^^^^^^ help: replace the use of the deprecated item: `trim_end` [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(deprecated)]` on by default [INFO] [stderr] [INFO] [stderr] warning: this method call currently resolves to `<&[T; N] as IntoIterator>::into_iter` (due to autoref coercions), but that might change in the future when `IntoIterator` impls for arrays are added. [INFO] [stderr] --> src/dna/translation.rs:158:65 [INFO] [stderr] | [INFO] [stderr] 158 | for (i, name) in ["AAs", "Starts", "Base1", "Base2", "Base3"].into_iter() [INFO] [stderr] | ^^^^^^^^^ help: use `.iter()` instead of `.into_iter()` to avoid ambiguity: `iter` [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(array_into_iter)]` on by default [INFO] [stderr] = warning: this was previously accepted by the compiler but is being phased out; it will become a hard error in a future release! [INFO] [stderr] = note: for more information, see issue #66145 [INFO] [stderr] [INFO] [stderr] warning: 2 warnings emitted [INFO] [stderr] [INFO] [stderr] warning: use of deprecated item 'try': use the `?` operator instead [INFO] [stderr] --> src/main.rs:631:3 [INFO] [stderr] | [INFO] [stderr] 631 | try!(writer.write_record(fasta::Record { [INFO] [stderr] | ^^^ [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(deprecated)]` on by default [INFO] [stderr] [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/main.rs:284:29 [INFO] [stderr] | [INFO] [stderr] 284 | let aggregator: Result> = match (args.method, args.strategy) { [INFO] [stderr] | ^^^^^^^^^^^^^^^ help: use `dyn`: `dyn agg::Aggregator` [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(bare_trait_objects)]` on by default [INFO] [stderr] [INFO] [stderr] warning: 2 warnings emitted [INFO] [stderr] [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 0.20s [INFO] [stderr] Running /opt/rustwide/target/debug/deps/umgap-1be9fa6df73be8f5 [INFO] [stdout] [INFO] [stdout] running 38 tests [INFO] [stdout] test rmq::lca::tests::test_with_deeper_interns ... ok [INFO] [stdout] test dna::tests::test_strand_from ... ok [INFO] [stdout] test dna::translation::tests::test_number_of_codons ... ok [INFO] [stdout] test dna::tests::test_strand_reversed ... ok [INFO] [stdout] test rmq::mix::tests::test_one_half ... ok [INFO] [stdout] test rmq::rmq::tests::test_rmq_single_block ... ok [INFO] [stdout] test rmq::rmq::tests::test_rmq_three_blocks ... ok [INFO] [stdout] test dna::translation::tests::test_translate ... ok [INFO] [stdout] test dna::tests::test_strand_frames ... ok [INFO] [stdout] test rmq::lca::tests::test_two_on_same_path ... ok [INFO] [stdout] test rmq::lca::tests::test_two_on_fork ... ok [INFO] [stdout] test rmq::mix::tests::test_full_rtl ... ok [INFO] [stdout] test rmq::rmq::tests::test_rmq_two_blocks ... ok [INFO] [stdout] test rmq::rmq::tests::test_wave_of_33 ... ok [INFO] [stdout] test rmq::rmq::tests::test_sparse ... ok [INFO] [stdout] test rmq::rmq::tests::test_wave_of_65 ... ok [INFO] [stdout] test rmq::rmq::tests::test_rmq_more_blocks ... ok [INFO] [stdout] test rmq::rmq::tests::test_block_minima ... ok [INFO] [stdout] test rmq::lca::tests::test_three_on_triangle ... ok [INFO] [stdout] test dna::translation::tests::test_translation_table_parsing ... ok [INFO] [stdout] test rmq::mix::tests::test_full_lca ... ok [INFO] [stdout] test taxon::tests::test_taxon_parsing ... ok [INFO] [stdout] test taxon::tests::test_euler_tour ... ok [INFO] [stdout] test taxon::tests::test_lineage ... ok [INFO] [stdout] test rmq::rtl::tests::non_deterministic ... ok [INFO] [stdout] test rmq::rtl::tests::favouring_root ... ok [INFO] [stdout] test agg::tests::test_singleton_is_singleton ... ok [INFO] [stdout] test tree::mix::tests::test_full_lca ... ok [INFO] [stdout] test rmq::rtl::tests::test_all_on_same_path ... ok [INFO] [stdout] test taxon::tests::test_taxon_list ... ok [INFO] [stdout] test tree::lca::tests::test_three_on_triangle ... ok [INFO] [stdout] test rmq::rtl::tests::leaning_close ... ok [INFO] [stdout] test tree::lca::tests::test_two_on_same_path ... ok [INFO] [stdout] test tree::mix::tests::test_two_thirds ... ok [INFO] [stdout] test tree::mix::tests::test_full_rtl ... ok [INFO] [stdout] test tree::lca::tests::test_two_on_fork ... ok [INFO] [stdout] test agg::tests::test_empty_query ... ok [INFO] [stdout] test agg::tests::test_invalid_taxa ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 38 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Running /opt/rustwide/target/debug/deps/umgap-c4dc60e54ead0556 [INFO] [stdout] running 0 tests [INFO] [stderr] Doc-tests umgap [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] running 1 test [INFO] [stdout] test src/taxon.rs - taxon::Taxon::from_str (line 75) ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 1 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out [INFO] [stdout] [INFO] running `"docker" "inspect" "a140d27bdfd42ce03e8ba4aa887485627b1655978864882d089d06026350ec3f"` [INFO] running `"docker" "rm" "-f" "a140d27bdfd42ce03e8ba4aa887485627b1655978864882d089d06026350ec3f"` [INFO] [stdout] a140d27bdfd42ce03e8ba4aa887485627b1655978864882d089d06026350ec3f