[INFO] fetching crate ncbitaxonomy 1.0.3...
[INFO] testing ncbitaxonomy-1.0.3 against beta-2020-06-03 for beta-1.45-1
[INFO] extracting crate ncbitaxonomy 1.0.3 into /workspace/builds/worker-3/source
[INFO] validating manifest of crates.io crate ncbitaxonomy 1.0.3 on toolchain beta-2020-06-03
[INFO] running `"/workspace/cargo-home/bin/cargo" "+beta-2020-06-03" "read-manifest" "--manifest-path" "Cargo.toml"`
[INFO] started tweaking crates.io crate ncbitaxonomy 1.0.3
[INFO] finished tweaking crates.io crate ncbitaxonomy 1.0.3
[INFO] tweaked toml for crates.io crate ncbitaxonomy 1.0.3 written to /workspace/builds/worker-3/source/Cargo.toml
[INFO] crate crates.io crate ncbitaxonomy 1.0.3 already has a lockfile, it will not be regenerated
[INFO] running `"/workspace/cargo-home/bin/cargo" "+beta-2020-06-03" "fetch" "--locked" "--manifest-path" "Cargo.toml"`
[INFO] running `"docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=0" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2020-06-03" "build" "--frozen"`
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] [stdout] b587ff3eec48ede93cc5186ccdf3dce138c67bc8fd5706ed502990a2381ce432
[INFO] running `"docker" "start" "-a" "b587ff3eec48ede93cc5186ccdf3dce138c67bc8fd5706ed502990a2381ce432"`
[INFO] [stderr] sudo: setrlimit(RLIMIT_CORE): Operation not permitted
[INFO] [stderr]    Compiling proc-macro2 v1.0.11
[INFO] [stderr]    Compiling syn v1.0.18
[INFO] [stderr]    Compiling libc v0.2.69
[INFO] [stderr]    Compiling serde v1.0.106
[INFO] [stderr]    Compiling arrayvec v0.4.12
[INFO] [stderr]    Compiling scopeguard v0.3.3
[INFO] [stderr]    Compiling rand_core v0.4.2
[INFO] [stderr]    Compiling nodrop v0.1.14
[INFO] [stderr]    Compiling cc v1.0.52
[INFO] [stderr]    Compiling memoffset v0.2.1
[INFO] [stderr]    Compiling stable_deref_trait v1.1.1
[INFO] [stderr]    Compiling crossbeam-utils v0.5.0
[INFO] [stderr]    Compiling semver v0.1.20
[INFO] [stderr]    Compiling ryu v1.0.4
[INFO] [stderr]    Compiling matrixmultiply v0.1.15
[INFO] [stderr]    Compiling failure_derive v0.1.7
[INFO] [stderr]    Compiling feature-probe v0.1.1
[INFO] [stderr]    Compiling regex-syntax v0.6.17
[INFO] [stderr]    Compiling ndarray v0.12.1
[INFO] [stderr]    Compiling rawpointer v0.1.0
[INFO] [stderr]    Compiling crc32fast v1.2.0
[INFO] [stderr]    Compiling bio v0.25.0
[INFO] [stderr]    Compiling adler32 v1.0.4
[INFO] [stderr]    Compiling bit-vec v0.5.1
[INFO] [stderr]    Compiling safemem v0.2.0
[INFO] [stderr]    Compiling strsim v0.7.0
[INFO] [stderr]    Compiling fnv v1.0.6
[INFO] [stderr]    Compiling custom_derive v0.1.7
[INFO] [stderr]    Compiling bytecount v0.3.2
[INFO] [stderr]    Compiling scoped_threadpool v0.1.9
[INFO] [stderr]    Compiling crossbeam-utils v0.6.6
[INFO] [stderr]    Compiling owning_ref v0.4.1
[INFO] [stderr]    Compiling libsqlite3-sys v0.17.3
[INFO] [stderr]    Compiling rand_core v0.3.1
[INFO] [stderr]    Compiling rustc_version v0.1.7
[INFO] [stderr]    Compiling bv v0.10.0
[INFO] [stderr]    Compiling itertools v0.7.11
[INFO] [stderr]    Compiling textwrap v0.10.0
[INFO] [stderr]    Compiling miniz_oxide v0.3.6
[INFO] [stderr]    Compiling bit-set v0.5.1
[INFO] [stderr]    Compiling lock_api v0.1.5
[INFO] [stderr]    Compiling aho-corasick v0.6.10
[INFO] [stderr]    Compiling csv-core v0.1.10
[INFO] [stderr]    Compiling fxhash v0.2.1
[INFO] [stderr]    Compiling parking_lot_core v0.3.1
[INFO] [stderr]    Compiling itertools-num v0.1.3
[INFO] [stderr]    Compiling ordered-float v1.0.2
[INFO] [stderr]    Compiling approx v0.3.2
[INFO] [stderr]    Compiling newtype_derive v0.1.6
[INFO] [stderr]    Compiling regex v0.2.11
[INFO] [stderr]    Compiling crossbeam-epoch v0.5.2
[INFO] [stderr]    Compiling crossbeam-epoch v0.6.1
[INFO] [stderr]    Compiling rand v0.5.6
[INFO] [stderr]    Compiling rand v0.4.6
[INFO] [stderr]    Compiling slice-deque v0.1.16
[INFO] [stderr]    Compiling atty v0.2.14
[INFO] [stderr]    Compiling flate2 v1.0.14
[INFO] [stderr]    Compiling quote v1.0.4
[INFO] [stderr]    Compiling crossbeam-deque v0.5.2
[INFO] [stderr]    Compiling backtrace-sys v0.1.37
[INFO] [stderr]    Compiling buf_redux v0.7.1
[INFO] [stderr]    Compiling rand v0.3.23
[INFO] [stderr]    Compiling statrs v0.9.0
[INFO] [stderr]    Compiling dotenv v0.9.0
[INFO] [stderr]    Compiling regex v1.3.7
[INFO] [stderr]    Compiling parking_lot v0.6.4
[INFO] [stderr]    Compiling backtrace v0.3.46
[INFO] [stderr]    Compiling crossbeam-channel v0.2.6
[INFO] [stderr]    Compiling crossbeam v0.4.1
[INFO] [stderr]    Compiling synstructure v0.12.3
[INFO] [stderr]    Compiling serde_derive v1.0.106
[INFO] [stderr]    Compiling derive-new v0.5.8
[INFO] [stderr]    Compiling thiserror-impl v1.0.16
[INFO] [stderr]    Compiling diesel_derives v1.4.1
[INFO] [stderr]    Compiling failure v0.1.7
[INFO] [stderr]    Compiling thiserror v1.0.16
[INFO] [stderr]    Compiling indextree v3.3.0
[INFO] [stderr]    Compiling diesel v1.4.4
[INFO] [stderr]    Compiling vec_map v0.8.1
[INFO] [stderr]    Compiling bstr v0.2.12
[INFO] [stderr]    Compiling multimap v0.4.0
[INFO] [stderr]    Compiling bio-types v0.6.0
[INFO] [stderr]    Compiling seq_io v0.3.0
[INFO] [stderr]    Compiling clap v2.32.0
[INFO] [stderr]    Compiling csv v1.1.3
[INFO] [stderr]    Compiling ncbitaxonomy v1.0.3 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished dev [unoptimized + debuginfo] target(s) in 2m 09s
[INFO] running `"docker" "inspect" "b587ff3eec48ede93cc5186ccdf3dce138c67bc8fd5706ed502990a2381ce432"`
[INFO] running `"docker" "rm" "-f" "b587ff3eec48ede93cc5186ccdf3dce138c67bc8fd5706ed502990a2381ce432"`
[INFO] [stdout] b587ff3eec48ede93cc5186ccdf3dce138c67bc8fd5706ed502990a2381ce432
[INFO] running `"docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=0" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2020-06-03" "test" "--frozen" "--no-run"`
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] [stdout] 9991b21fd7748c9675f2c778e8fbef79cfade0c9db8a6f352d5e9457b47fda37
[INFO] running `"docker" "start" "-a" "9991b21fd7748c9675f2c778e8fbef79cfade0c9db8a6f352d5e9457b47fda37"`
[INFO] [stderr] sudo: setrlimit(RLIMIT_CORE): Operation not permitted
[INFO] [stderr]    Compiling ncbitaxonomy v1.0.3 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished test [unoptimized + debuginfo] target(s) in 5.62s
[INFO] running `"docker" "inspect" "9991b21fd7748c9675f2c778e8fbef79cfade0c9db8a6f352d5e9457b47fda37"`
[INFO] running `"docker" "rm" "-f" "9991b21fd7748c9675f2c778e8fbef79cfade0c9db8a6f352d5e9457b47fda37"`
[INFO] [stdout] 9991b21fd7748c9675f2c778e8fbef79cfade0c9db8a6f352d5e9457b47fda37
[INFO] running `"docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=0" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2020-06-03" "test" "--frozen"`
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] [stdout] 4dc27b7d7f531aafc7a896ecd30ecb37eaf8c4680df3887031681792ea5f536b
[INFO] running `"docker" "start" "-a" "4dc27b7d7f531aafc7a896ecd30ecb37eaf8c4680df3887031681792ea5f536b"`
[INFO] [stderr] sudo: setrlimit(RLIMIT_CORE): Operation not permitted
[INFO] [stderr]     Finished test [unoptimized + debuginfo] target(s) in 0.29s
[INFO] [stderr]      Running /opt/rustwide/target/debug/deps/ncbitaxonomy-8323ae03611abd1a
[INFO] [stdout] 
[INFO] [stdout] running 21 tests
[INFO] [stdout] test tests::get_id_by_node ... ok
[INFO] [stdout] test tests::distance_to_common_ancestor ... ok
[INFO] [stdout] test tests::distance_to_common_ancestor_canonical ... ok
[INFO] [stdout] test tests::descendants ... ok
[INFO] [stdout] test tests::sqlite_contains_id ... ok
[INFO] [stdout] test tests::sqlite_distance_to_common_ancestor_canonical ... ok
[INFO] [stdout] test tests::sqlite_distance_to_common_ancestor ... ok
[INFO] [stdout] test tests::sqlite_descendants ... ok
[INFO] [stdout] test tests::sqlite_contains_name ... ok
[INFO] [stdout] test tests::sqlite_distance_to_common_ancestor_taxid_canonical ... ok
[INFO] [stdout] test tests::sqlite_distance_to_common_ancestor_taxid ... ok
[INFO] [stdout] test tests::sqlite_get_name_by_id ... ok
[INFO] [stdout] test tests::sqlite_taxid_descendants ... ok
[INFO] [stdout] test tests::get_name_by_id ... ok
[INFO] [stdout] test tests::get_node_by_id ... ok
[INFO] [stdout] test tests::distance_to_common_ancestor_taxid_canonical ... ok
[INFO] [stdout] test tests::distance_to_common_ancestor_taxid ... ok
[INFO] [stdout] test tests::contains_id ... ok
[INFO] [stdout] test tests::contains_name ... ok
[INFO] [stdout] test tests::taxid_descendants ... ok
[INFO] [stdout] test tests::traversal ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 21 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out
[INFO] [stdout] 
[INFO] [stderr]      Running /opt/rustwide/target/debug/deps/taxonomy_filter_fastq-febf86e3d3fff11c
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out
[INFO] [stdout] 
[INFO] [stderr]      Running /opt/rustwide/target/debug/deps/taxonomy_filter_refseq-3a4a720487c78866
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out
[INFO] [stdout] 
[INFO] [stderr]      Running /opt/rustwide/target/debug/deps/taxonomy_util-d67bd0aeefbd7b86
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out
[INFO] [stdout] 
[INFO] [stderr]    Doc-tests ncbitaxonomy
[INFO] [stdout] 
[INFO] [stdout] running 1 test
[INFO] [stdout] test src/lib.rs - NcbiFileTaxonomy::from_ncbi_files (line 93) ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 1 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out
[INFO] [stdout] 
[INFO] running `"docker" "inspect" "4dc27b7d7f531aafc7a896ecd30ecb37eaf8c4680df3887031681792ea5f536b"`
[INFO] running `"docker" "rm" "-f" "4dc27b7d7f531aafc7a896ecd30ecb37eaf8c4680df3887031681792ea5f536b"`
[INFO] [stdout] 4dc27b7d7f531aafc7a896ecd30ecb37eaf8c4680df3887031681792ea5f536b