[INFO] fetching crate hdf5-sys 0.6.1... [INFO] testing hdf5-sys-0.6.1 against beta-2020-06-03 for beta-1.45-1 [INFO] extracting crate hdf5-sys 0.6.1 into /workspace/builds/worker-4/source [INFO] validating manifest of crates.io crate hdf5-sys 0.6.1 on toolchain beta-2020-06-03 [INFO] running `"/workspace/cargo-home/bin/cargo" "+beta-2020-06-03" "read-manifest" "--manifest-path" "Cargo.toml"` [INFO] started tweaking crates.io crate hdf5-sys 0.6.1 [INFO] finished tweaking crates.io crate hdf5-sys 0.6.1 [INFO] tweaked toml for crates.io crate hdf5-sys 0.6.1 written to /workspace/builds/worker-4/source/Cargo.toml [INFO] running `"/workspace/cargo-home/bin/cargo" "+beta-2020-06-03" "generate-lockfile" "--manifest-path" "Cargo.toml" "-Zno-index-update"` [INFO] running `"/workspace/cargo-home/bin/cargo" "+beta-2020-06-03" "fetch" "--locked" "--manifest-path" "Cargo.toml"` [INFO] running `"docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=0" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2020-06-03" "build" "--frozen"` [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] [stdout] 61b1cd596eb28c90675316d188188e902aac3d2c39850136390c657f0a97082c [INFO] running `"docker" "start" "-a" "61b1cd596eb28c90675316d188188e902aac3d2c39850136390c657f0a97082c"` [INFO] [stderr] sudo: setrlimit(RLIMIT_CORE): Operation not permitted [INFO] [stderr] Compiling libloading v0.6.2 [INFO] [stderr] Compiling hdf5-sys v0.6.1 (/opt/rustwide/workdir) [INFO] [stderr] error: failed to run custom build command for `hdf5-sys v0.6.1 (/opt/rustwide/workdir)` [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] process didn't exit successfully: `/opt/rustwide/target/debug/build/hdf5-sys-58f8ab70309340ca/build-script-build` (exit code: 101) [INFO] [stderr] --- stdout [INFO] [stderr] Attempting to find HDF5 via pkg-config... [INFO] [stderr] [INFO] [stderr] --- stderr [INFO] [stderr] thread 'main' panicked at 'Unable to locate HDF5 root directory and/or headers.', build.rs:523:13 [INFO] [stderr] stack backtrace: [INFO] [stderr] 0: 0x564578178815 - backtrace::backtrace::libunwind::trace::h07c956be65d9b461 [INFO] [stderr] at /cargo/registry/src/github.com-1ecc6299db9ec823/backtrace-0.3.46/src/backtrace/libunwind.rs:86 [INFO] [stderr] 1: 0x564578178815 - backtrace::backtrace::trace_unsynchronized::h2fdb9e4177ad4d20 [INFO] [stderr] at /cargo/registry/src/github.com-1ecc6299db9ec823/backtrace-0.3.46/src/backtrace/mod.rs:66 [INFO] [stderr] 2: 0x564578178815 - std::sys_common::backtrace::_print_fmt::ha62d8426311107ac [INFO] [stderr] at src/libstd/sys_common/backtrace.rs:78 [INFO] [stderr] 3: 0x564578178815 - ::fmt::h3ec6bdab62f1e8d9 [INFO] [stderr] at src/libstd/sys_common/backtrace.rs:59 [INFO] [stderr] 4: 0x56457819c35c - core::fmt::write::h935cb0ed4078a853 [INFO] [stderr] at src/libcore/fmt/mod.rs:1076 [INFO] [stderr] 5: 0x564578175693 - std::io::Write::write_fmt::hc912aacf8d691eb3 [INFO] [stderr] at src/libstd/io/mod.rs:1537 [INFO] [stderr] 6: 0x56457817ae00 - std::sys_common::backtrace::_print::h460db802d801ccf8 [INFO] [stderr] at src/libstd/sys_common/backtrace.rs:62 [INFO] [stderr] 7: 0x56457817ae00 - std::sys_common::backtrace::print::h399d664f56640530 [INFO] [stderr] at src/libstd/sys_common/backtrace.rs:49 [INFO] [stderr] 8: 0x56457817ae00 - std::panicking::default_hook::{{closure}}::hc6dfd87957c765b8 [INFO] [stderr] at src/libstd/panicking.rs:198 [INFO] [stderr] 9: 0x56457817ab4c - std::panicking::default_hook::hfdceba6d6d1a18ae [INFO] [stderr] at src/libstd/panicking.rs:218 [INFO] [stderr] 10: 0x56457817b437 - std::panicking::rust_panic_with_hook::hd01e282bff1b1e63 [INFO] [stderr] at src/libstd/panicking.rs:486 [INFO] [stderr] 11: 0x56457816088b - std::panicking::begin_panic::h74ba1164448ee515 [INFO] [stderr] at /rustc/b7dc83a3f6ca9746fb3d121761c3605477b77d90/src/libstd/panicking.rs:410 [INFO] [stderr] 12: 0x564577f5b3fb - build_script_build::LibrarySearcher::try_locate_hdf5_library::h169e58dc6496a373 [INFO] [stderr] at /opt/rustwide/workdir/build.rs:523 [INFO] [stderr] 13: 0x564577f5c76b - build_script_build::main::hb28e89e0ad29db8f [INFO] [stderr] at /opt/rustwide/workdir/build.rs:601 [INFO] [stderr] 14: 0x564577f6662b - std::rt::lang_start::{{closure}}::hed56353908ab5231 [INFO] [stderr] at /rustc/b7dc83a3f6ca9746fb3d121761c3605477b77d90/src/libstd/rt.rs:67 [INFO] [stderr] 15: 0x56457817b808 - std::rt::lang_start_internal::{{closure}}::haabc9d435e1b0c2f [INFO] [stderr] at src/libstd/rt.rs:52 [INFO] [stderr] 16: 0x56457817b808 - std::panicking::try::do_call::h54d9370b0ac83700 [INFO] [stderr] at src/libstd/panicking.rs:297 [INFO] [stderr] 17: 0x56457817b808 - std::panicking::try::h85e1c41421d5b6f9 [INFO] [stderr] at src/libstd/panicking.rs:274 [INFO] [stderr] 18: 0x56457817b808 - std::panic::catch_unwind::hfd957e6c9fdcf274 [INFO] [stderr] at src/libstd/panic.rs:394 [INFO] [stderr] 19: 0x56457817b808 - std::rt::lang_start_internal::hed9744eef32ef5a1 [INFO] [stderr] at src/libstd/rt.rs:51 [INFO] [stderr] 20: 0x564577f66607 - std::rt::lang_start::h39f08359a04b1be0 [INFO] [stderr] at /rustc/b7dc83a3f6ca9746fb3d121761c3605477b77d90/src/libstd/rt.rs:67 [INFO] [stderr] 21: 0x564577f5d21a - main [INFO] [stderr] 22: 0x7f4d994b50b3 - __libc_start_main [INFO] [stderr] 23: 0x564577f5719e - _start [INFO] [stderr] 24: 0x0 - [INFO] [stderr] [INFO] running `"docker" "inspect" "61b1cd596eb28c90675316d188188e902aac3d2c39850136390c657f0a97082c"` [INFO] running `"docker" "rm" "-f" "61b1cd596eb28c90675316d188188e902aac3d2c39850136390c657f0a97082c"` [INFO] [stdout] 61b1cd596eb28c90675316d188188e902aac3d2c39850136390c657f0a97082c