[INFO] crate checkm 0.0.1 is already in cache [INFO] testing checkm-0.0.1 against beta-2020-06-03 for beta-1.45-1 [INFO] extracting crate checkm 0.0.1 into /workspace/builds/worker-6/source [INFO] validating manifest of crates.io crate checkm 0.0.1 on toolchain beta-2020-06-03 [INFO] running `"/workspace/cargo-home/bin/cargo" "+beta-2020-06-03" "read-manifest" "--manifest-path" "Cargo.toml"` [INFO] started tweaking crates.io crate checkm 0.0.1 [INFO] finished tweaking crates.io crate checkm 0.0.1 [INFO] tweaked toml for crates.io crate checkm 0.0.1 written to /workspace/builds/worker-6/source/Cargo.toml [INFO] running `"/workspace/cargo-home/bin/cargo" "+beta-2020-06-03" "generate-lockfile" "--manifest-path" "Cargo.toml" "-Zno-index-update"` [INFO] running `"/workspace/cargo-home/bin/cargo" "+beta-2020-06-03" "fetch" "--locked" "--manifest-path" "Cargo.toml"` [INFO] running `"docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=0" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2020-06-03" "build" "--frozen"` [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] [stdout] ed80ef4a12d5d4e42c6b2a5c75b08863c8724628ac065f56101e9d9be30911f4 [INFO] running `"docker" "start" "-a" "ed80ef4a12d5d4e42c6b2a5c75b08863c8724628ac065f56101e9d9be30911f4"` [INFO] [stderr] sudo: setrlimit(RLIMIT_CORE): Operation not permitted [INFO] [stderr] Compiling env_logger v0.7.1 [INFO] [stderr] Compiling bstr v0.2.13 [INFO] [stderr] Compiling csv v1.1.3 [INFO] [stderr] Compiling checkm v0.0.1 (/opt/rustwide/workdir) [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 5.83s [INFO] running `"docker" "inspect" "ed80ef4a12d5d4e42c6b2a5c75b08863c8724628ac065f56101e9d9be30911f4"` [INFO] running `"docker" "rm" "-f" "ed80ef4a12d5d4e42c6b2a5c75b08863c8724628ac065f56101e9d9be30911f4"` [INFO] [stdout] ed80ef4a12d5d4e42c6b2a5c75b08863c8724628ac065f56101e9d9be30911f4 [INFO] running `"docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=0" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2020-06-03" "test" "--frozen" "--no-run"` [INFO] [stdout] 479a91d4f2bf1396c65c258799cc90d0aa188adc849951f323c201d31126bd24 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `"docker" "start" "-a" "479a91d4f2bf1396c65c258799cc90d0aa188adc849951f323c201d31126bd24"` [INFO] [stderr] sudo: setrlimit(RLIMIT_CORE): Operation not permitted [INFO] [stderr] Compiling checkm v0.0.1 (/opt/rustwide/workdir) [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 3.43s [INFO] running `"docker" "inspect" "479a91d4f2bf1396c65c258799cc90d0aa188adc849951f323c201d31126bd24"` [INFO] running `"docker" "rm" "-f" "479a91d4f2bf1396c65c258799cc90d0aa188adc849951f323c201d31126bd24"` [INFO] [stdout] 479a91d4f2bf1396c65c258799cc90d0aa188adc849951f323c201d31126bd24 [INFO] running `"docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=0" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2020-06-03" "test" "--frozen"` [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] [stdout] d7af2e7c5fe2b78cba6ce9f0e5e0da6c5374512d6f19f2f2ea79b93879993c12 [INFO] running `"docker" "start" "-a" "d7af2e7c5fe2b78cba6ce9f0e5e0da6c5374512d6f19f2f2ea79b93879993c12"` [INFO] [stderr] sudo: setrlimit(RLIMIT_CORE): Operation not permitted [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 0.18s [INFO] [stderr] Running /opt/rustwide/target/debug/deps/checkm-0c90d26c414adf28 [INFO] [stdout] [INFO] [stdout] running 6 tests [INFO] [stdout] test test::test_good_quality_genome_names ... ok [INFO] [stdout] test test::test_fasta_ordering_4times ... ok [INFO] [stdout] test test::test_fasta_ordering_4times_min_completeness ... ok [INFO] [stdout] test test::test_ordering_4times ... ok [INFO] [stderr] Doc-tests checkm [INFO] [stdout] test test::test_retrieve ... ok [INFO] [stdout] test test::test_ordering_5times ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 6 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out [INFO] [stdout] [INFO] running `"docker" "inspect" "d7af2e7c5fe2b78cba6ce9f0e5e0da6c5374512d6f19f2f2ea79b93879993c12"` [INFO] running `"docker" "rm" "-f" "d7af2e7c5fe2b78cba6ce9f0e5e0da6c5374512d6f19f2f2ea79b93879993c12"` [INFO] [stdout] d7af2e7c5fe2b78cba6ce9f0e5e0da6c5374512d6f19f2f2ea79b93879993c12