[INFO] updating cached repository https://github.com/sstadick/rumi [INFO] running `"git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "-c" "remote.origin.fetch=refs/heads/*:refs/heads/*" "fetch" "origin" "--force" "--prune"` [INFO] running `"git" "rev-parse" "HEAD"` [INFO] [stdout] 34a92eb41857a1a1c4c096f516a0271ed57d16f4 [INFO] testing sstadick/rumi against beta-2020-06-03 for beta-1.45-1 [INFO] running `"git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fsstadick%2Frumi" "/workspace/builds/worker-7/source"` [INFO] [stderr] Cloning into '/workspace/builds/worker-7/source'... [INFO] [stderr] done. [INFO] validating manifest of git repo https://github.com/sstadick/rumi on toolchain beta-2020-06-03 [INFO] running `"/workspace/cargo-home/bin/cargo" "+beta-2020-06-03" "read-manifest" "--manifest-path" "Cargo.toml"` [INFO] started tweaking git repo https://github.com/sstadick/rumi [INFO] finished tweaking git repo https://github.com/sstadick/rumi [INFO] tweaked toml for git repo https://github.com/sstadick/rumi written to /workspace/builds/worker-7/source/Cargo.toml [INFO] crate git repo https://github.com/sstadick/rumi already has a lockfile, it will not be regenerated [INFO] running `"/workspace/cargo-home/bin/cargo" "+beta-2020-06-03" "fetch" "--locked" "--manifest-path" "Cargo.toml"` [INFO] running `"docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=0" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2020-06-03" "build" "--frozen"` [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] [stdout] 78035ee01f37f324aee84ad46c7a222a5705aafb492ceff86e16228c946abb16 [INFO] running `"docker" "start" "-a" "78035ee01f37f324aee84ad46c7a222a5705aafb492ceff86e16228c946abb16"` [INFO] [stderr] sudo: setrlimit(RLIMIT_CORE): Operation not permitted [INFO] [stderr] Compiling syn v0.15.39 [INFO] [stderr] Compiling proc-macro2 v1.0.6 [INFO] [stderr] Compiling doc-comment v0.3.1 [INFO] [stderr] Compiling ieee754 v0.2.6 [INFO] [stderr] Compiling custom_derive v0.1.7 [INFO] [stderr] Compiling linear-map v1.2.0 [INFO] [stderr] Compiling basebits v1.2.0 [INFO] [stderr] Compiling backtrace-sys v0.1.32 [INFO] [stderr] Compiling fs-utils v1.1.1 [INFO] [stderr] Compiling clang-sys v0.28.0 [INFO] [stderr] Compiling libz-sys v1.0.25 [INFO] [stderr] Compiling lzma-sys v0.1.14 [INFO] [stderr] Compiling newtype_derive v0.1.6 [INFO] [stderr] Compiling which v3.1.0 [INFO] [stderr] Compiling num_cpus v1.10.1 [INFO] [stderr] Compiling bzip2-sys v0.1.7 [INFO] [stderr] Compiling clap v2.33.0 [INFO] [stderr] Compiling cexpr v0.3.5 [INFO] [stderr] Compiling env_logger v0.6.2 [INFO] [stderr] Compiling crossbeam-deque v0.6.3 [INFO] [stderr] Compiling bindgen v0.51.1 [INFO] [stderr] Compiling rayon-core v1.5.0 [INFO] [stderr] Compiling quote v1.0.2 [INFO] [stderr] Compiling rayon v1.1.0 [INFO] [stderr] Compiling backtrace v0.3.40 [INFO] [stderr] Compiling snafu-derive v0.5.0 [INFO] [stderr] Compiling serde_derive v1.0.97 [INFO] [stderr] Compiling snafu v0.5.0 [INFO] [stderr] Compiling rust-htslib v0.26.0 [INFO] [stderr] Compiling bio-types v0.5.1 [INFO] [stderr] Compiling rumi v0.2.1 (/opt/rustwide/workdir) [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 1m 56s [INFO] running `"docker" "inspect" "78035ee01f37f324aee84ad46c7a222a5705aafb492ceff86e16228c946abb16"` [INFO] running `"docker" "rm" "-f" "78035ee01f37f324aee84ad46c7a222a5705aafb492ceff86e16228c946abb16"` [INFO] [stdout] 78035ee01f37f324aee84ad46c7a222a5705aafb492ceff86e16228c946abb16 [INFO] running `"docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=0" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2020-06-03" "test" "--frozen" "--no-run"` [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] [stdout] 67edd4d786c38a731baad0d4c41971ef42544f550079c25940fc3b1e95570950 [INFO] running `"docker" "start" "-a" "67edd4d786c38a731baad0d4c41971ef42544f550079c25940fc3b1e95570950"` [INFO] [stderr] sudo: setrlimit(RLIMIT_CORE): Operation not permitted [INFO] [stderr] Compiling rumi v0.2.1 (/opt/rustwide/workdir) [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 5.45s [INFO] running `"docker" "inspect" "67edd4d786c38a731baad0d4c41971ef42544f550079c25940fc3b1e95570950"` [INFO] running `"docker" "rm" "-f" "67edd4d786c38a731baad0d4c41971ef42544f550079c25940fc3b1e95570950"` [INFO] [stdout] 67edd4d786c38a731baad0d4c41971ef42544f550079c25940fc3b1e95570950 [INFO] running `"docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=0" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2020-06-03" "test" "--frozen"` [INFO] [stdout] 5a9ce750ed16125154264f6f0278550b62732bdfb5ebb7d3046ce966b1322b8f [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `"docker" "start" "-a" "5a9ce750ed16125154264f6f0278550b62732bdfb5ebb7d3046ce966b1322b8f"` [INFO] [stderr] sudo: setrlimit(RLIMIT_CORE): Operation not permitted [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 0.48s [INFO] [stderr] Running /opt/rustwide/target/debug/deps/rumi_lib-085f08b274b8f575 [INFO] [stdout] [INFO] [stdout] running 7 tests [INFO] [stdout] test test::test_group_reads_small ... ok [INFO] [stdout] test test::test_read_groups_cigars ... ok [INFO] [stdout] test test::test_graph_umi ... ok [INFO] [stdout] test test::test_graph_small ... ok [INFO] [stdout] test test::test_group_reads_complex ... ok [INFO] [stdout] test test::test_read_groups_umi_tools ... ok [INFO] [stdout] test test::test_determine_umi ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 7 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Running /opt/rustwide/target/debug/deps/rumi-82141fc985b7197e [INFO] [stdout] running 0 tests [INFO] [stderr] Doc-tests rumi_lib [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out [INFO] [stdout] [INFO] running `"docker" "inspect" "5a9ce750ed16125154264f6f0278550b62732bdfb5ebb7d3046ce966b1322b8f"` [INFO] running `"docker" "rm" "-f" "5a9ce750ed16125154264f6f0278550b62732bdfb5ebb7d3046ce966b1322b8f"` [INFO] [stdout] 5a9ce750ed16125154264f6f0278550b62732bdfb5ebb7d3046ce966b1322b8f