[INFO] updating cached repository https://github.com/robsyme/rustalind [INFO] running `"git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "-c" "remote.origin.fetch=refs/heads/*:refs/heads/*" "fetch" "origin" "--force" "--prune"` [INFO] running `"git" "rev-parse" "HEAD"` [INFO] [stdout] 264d21ca5f12caf9ce4156f1d721874a4cd24e12 [INFO] testing robsyme/rustalind against beta-2020-06-03 for beta-1.45-1 [INFO] running `"git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Frobsyme%2Frustalind" "/workspace/builds/worker-3/source"` [INFO] [stderr] Cloning into '/workspace/builds/worker-3/source'... [INFO] [stderr] done. [INFO] validating manifest of git repo https://github.com/robsyme/rustalind on toolchain beta-2020-06-03 [INFO] running `"/workspace/cargo-home/bin/cargo" "+beta-2020-06-03" "read-manifest" "--manifest-path" "Cargo.toml"` [INFO] started tweaking git repo https://github.com/robsyme/rustalind [INFO] finished tweaking git repo https://github.com/robsyme/rustalind [INFO] tweaked toml for git repo https://github.com/robsyme/rustalind written to /workspace/builds/worker-3/source/Cargo.toml [INFO] crate git repo https://github.com/robsyme/rustalind already has a lockfile, it will not be regenerated [INFO] running `"/workspace/cargo-home/bin/cargo" "+beta-2020-06-03" "fetch" "--locked" "--manifest-path" "Cargo.toml"` [INFO] running `"docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=0" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2020-06-03" "build" "--frozen"` [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] [stdout] d31f7b3c4e6b0d7231d2130fe0cc5c0872de4622ac4549bdef950a8048001140 [INFO] running `"docker" "start" "-a" "d31f7b3c4e6b0d7231d2130fe0cc5c0872de4622ac4549bdef950a8048001140"` [INFO] [stderr] sudo: setrlimit(RLIMIT_CORE): Operation not permitted [INFO] [stderr] Compiling libc v0.2.49 [INFO] [stderr] Compiling unicode-width v0.1.5 [INFO] [stderr] Compiling vec_map v0.8.1 [INFO] [stderr] Compiling strsim v0.7.0 [INFO] [stderr] Compiling bitflags v1.0.4 [INFO] [stderr] Compiling bit-vec v0.5.0 [INFO] [stderr] Compiling ansi_term v0.11.0 [INFO] [stderr] Compiling textwrap v0.10.0 [INFO] [stderr] Compiling bit-set v0.5.0 [INFO] [stderr] Compiling atty v0.2.11 [INFO] [stderr] Compiling clap v2.32.0 [INFO] [stderr] Compiling rustalind v0.1.0 (/opt/rustwide/workdir) [INFO] [stderr] warning: unused import: `std::convert::TryFrom` [INFO] [stderr] --> src/seq/nuc.rs:2:5 [INFO] [stderr] | [INFO] [stderr] 2 | use std::convert::TryFrom; [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(unused_imports)]` on by default [INFO] [stderr] [INFO] [stderr] warning: 1 warning emitted [INFO] [stderr] [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 10.03s [INFO] running `"docker" "inspect" "d31f7b3c4e6b0d7231d2130fe0cc5c0872de4622ac4549bdef950a8048001140"` [INFO] running `"docker" "rm" "-f" "d31f7b3c4e6b0d7231d2130fe0cc5c0872de4622ac4549bdef950a8048001140"` [INFO] [stdout] d31f7b3c4e6b0d7231d2130fe0cc5c0872de4622ac4549bdef950a8048001140 [INFO] running `"docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=0" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2020-06-03" "test" "--frozen" "--no-run"` [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] [stdout] 9866633577ce2595097395ae5b24bfe1c88b1cd23c515bd22661c71ef6a57eb7 [INFO] running `"docker" "start" "-a" "9866633577ce2595097395ae5b24bfe1c88b1cd23c515bd22661c71ef6a57eb7"` [INFO] [stderr] sudo: setrlimit(RLIMIT_CORE): Operation not permitted [INFO] [stderr] Compiling rustalind v0.1.0 (/opt/rustwide/workdir) [INFO] [stderr] warning: unused import: `std::convert::TryFrom` [INFO] [stderr] --> src/seq/nuc.rs:2:5 [INFO] [stderr] | [INFO] [stderr] 2 | use std::convert::TryFrom; [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(unused_imports)]` on by default [INFO] [stderr] [INFO] [stderr] warning: 1 warning emitted [INFO] [stderr] [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 2.38s [INFO] running `"docker" "inspect" "9866633577ce2595097395ae5b24bfe1c88b1cd23c515bd22661c71ef6a57eb7"` [INFO] running `"docker" "rm" "-f" "9866633577ce2595097395ae5b24bfe1c88b1cd23c515bd22661c71ef6a57eb7"` [INFO] [stdout] 9866633577ce2595097395ae5b24bfe1c88b1cd23c515bd22661c71ef6a57eb7 [INFO] running `"docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=0" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2020-06-03" "test" "--frozen"` [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] [stdout] 49eb4dcc8250cd9e6c05988a1084df9e2188e7e8c9f38eea39497d4a91a84131 [INFO] running `"docker" "start" "-a" "49eb4dcc8250cd9e6c05988a1084df9e2188e7e8c9f38eea39497d4a91a84131"` [INFO] [stderr] sudo: setrlimit(RLIMIT_CORE): Operation not permitted [INFO] [stderr] warning: unused import: `std::convert::TryFrom` [INFO] [stderr] --> src/seq/nuc.rs:2:5 [INFO] [stderr] | [INFO] [stderr] 2 | use std::convert::TryFrom; [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(unused_imports)]` on by default [INFO] [stderr] [INFO] [stderr] warning: 1 warning emitted [INFO] [stderr] [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 0.07s [INFO] [stderr] Running /opt/rustwide/target/debug/deps/rustalind-94b3acb11430b011 [INFO] [stdout] [INFO] [stdout] running 12 tests [INFO] [stdout] test io::tests::blank_fasta ... ok [INFO] [stdout] test io::tests::erroneous_fasta ... ok [INFO] [stdout] test seq::translation::tests::test_get ... ok [INFO] [stdout] test seq::nuc::tests::dna_bit_and ... ok [INFO] [stdout] test seq::nuc::tests::dna_complement ... ok [INFO] [stdout] test seq::nuc::tests::dna_from_chars ... ok [INFO] [stdout] test seq::codon::tests::test_table_integration ... ok [INFO] [stdout] test seq::nuc::tests::dna_as_tagged_enums ... ok [INFO] [stdout] test seq::nuc::tests::dna_bit_xor ... ok [INFO] [stdout] test seq::nuc::tests::dna_from_string ... ok [INFO] [stdout] test seq::nuc::tests::dna_bit_or ... ok [INFO] [stdout] test io::tests::test_gc_counting ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 12 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out [INFO] [stdout] [INFO] [stderr] Running /opt/rustwide/target/debug/deps/rustalind-aa939977c22f272d [INFO] [stdout] [INFO] [stdout] running 6 tests [INFO] [stdout] test hamm::tests::basic_distance ... ok [INFO] [stdout] test prot::tests::test_translate ... ok [INFO] [stdout] test dna::tests::count_basic_occurrences ... ok [INFO] [stdout] test fib::tests::test_basic_recurrence ... ok [INFO] [stdout] test revc::tests::test_reverse_complement ... ok [INFO] [stdout] test rna::tests::test_translation ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 6 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out [INFO] [stdout] [INFO] [stderr] Doc-tests rustalind [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out [INFO] [stdout] [INFO] running `"docker" "inspect" "49eb4dcc8250cd9e6c05988a1084df9e2188e7e8c9f38eea39497d4a91a84131"` [INFO] running `"docker" "rm" "-f" "49eb4dcc8250cd9e6c05988a1084df9e2188e7e8c9f38eea39497d4a91a84131"` [INFO] [stdout] 49eb4dcc8250cd9e6c05988a1084df9e2188e7e8c9f38eea39497d4a91a84131