[INFO] updating cached repository https://github.com/mbhall88/rasusa
[INFO] running `"git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "-c" "remote.origin.fetch=refs/heads/*:refs/heads/*" "fetch" "origin" "--force" "--prune"`
[INFO] [stderr] From https://github.com/mbhall88/rasusa
[INFO] [stderr]    1f4592a..9487a3c  master      -> master
[INFO] [stderr]  * [new branch]      needletail  -> needletail
[INFO] [stderr]  * [new branch]      preallocate -> preallocate
[INFO] running `"git" "rev-parse" "HEAD"`
[INFO] [stdout] 9487a3c2a5f4ba2392b69b154482f7e27a5ccf56
[INFO] testing mbhall88/rasusa against beta-2020-06-03 for beta-1.45-1
[INFO] running `"git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fmbhall88%2Frasusa" "/workspace/builds/worker-7/source"`
[INFO] [stderr] Cloning into '/workspace/builds/worker-7/source'...
[INFO] [stderr] done.
[INFO] validating manifest of git repo https://github.com/mbhall88/rasusa on toolchain beta-2020-06-03
[INFO] running `"/workspace/cargo-home/bin/cargo" "+beta-2020-06-03" "read-manifest" "--manifest-path" "Cargo.toml"`
[INFO] started tweaking git repo https://github.com/mbhall88/rasusa
[INFO] finished tweaking git repo https://github.com/mbhall88/rasusa
[INFO] tweaked toml for git repo https://github.com/mbhall88/rasusa written to /workspace/builds/worker-7/source/Cargo.toml
[INFO] crate git repo https://github.com/mbhall88/rasusa already has a lockfile, it will not be regenerated
[INFO] running `"/workspace/cargo-home/bin/cargo" "+beta-2020-06-03" "fetch" "--locked" "--manifest-path" "Cargo.toml"`
[INFO] running `"docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=0" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2020-06-03" "build" "--frozen"`
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] [stdout] e8e298a09bfcafb1053686fa52c86ae3d1a6e0b708812c2dd270b212dc4170a7
[INFO] running `"docker" "start" "-a" "e8e298a09bfcafb1053686fa52c86ae3d1a6e0b708812c2dd270b212dc4170a7"`
[INFO] [stderr] sudo: setrlimit(RLIMIT_CORE): Operation not permitted
[INFO] [stderr]    Compiling syn v1.0.5
[INFO] [stderr]    Compiling winapi v0.3.8
[INFO] [stderr]    Compiling feature-probe v0.1.1
[INFO] [stderr]    Compiling ndarray v0.13.0
[INFO] [stderr]    Compiling bio v0.29.0
[INFO] [stderr]    Compiling bit-vec v0.5.1
[INFO] [stderr]    Compiling bytecount v0.6.0
[INFO] [stderr]    Compiling strum v0.16.0
[INFO] [stderr]    Compiling num-integer v0.1.41
[INFO] [stderr]    Compiling num-complex v0.2.3
[INFO] [stderr]    Compiling itertools v0.8.0
[INFO] [stderr]    Compiling newtype_derive v0.1.6
[INFO] [stderr]    Compiling memchr v2.2.1
[INFO] [stderr]    Compiling regex-automata v0.1.8
[INFO] [stderr]    Compiling flate2 v1.0.12
[INFO] [stderr]    Compiling itertools-num v0.1.3
[INFO] [stderr]    Compiling rand_pcg v0.2.1
[INFO] [stderr]    Compiling statrs v0.11.0
[INFO] [stderr]    Compiling rand v0.7.2
[INFO] [stderr]    Compiling synstructure v0.10.2
[INFO] [stderr]    Compiling snafu-derive v0.5.0
[INFO] [stderr]    Compiling bit-set v0.5.1
[INFO] [stderr]    Compiling aho-corasick v0.7.6
[INFO] [stderr]    Compiling csv-core v0.1.6
[INFO] [stderr]    Compiling bv v0.11.0
[INFO] [stderr]    Compiling winconsole v0.10.0
[INFO] [stderr]    Compiling chrono v0.4.9
[INFO] [stderr]    Compiling colored v1.8.0
[INFO] [stderr]    Compiling regex v1.3.1
[INFO] [stderr]    Compiling failure_derive v0.1.5
[INFO] [stderr]    Compiling fern v0.5.9
[INFO] [stderr]    Compiling snafu v0.5.0
[INFO] [stderr]    Compiling failure v0.1.5
[INFO] [stderr]    Compiling exitfailure v0.5.1
[INFO] [stderr]    Compiling proc-macro-error v0.2.6
[INFO] [stderr]    Compiling serde_derive v1.0.101
[INFO] [stderr]    Compiling strum_macros v0.16.0
[INFO] [stderr]    Compiling structopt-derive v0.3.2
[INFO] [stderr]    Compiling serde v1.0.101
[INFO] [stderr]    Compiling vec_map v0.8.1
[INFO] [stderr]    Compiling bstr v0.2.8
[INFO] [stderr]    Compiling bio-types v0.5.1
[INFO] [stderr]    Compiling multimap v0.6.0
[INFO] [stderr]    Compiling clap v2.33.0
[INFO] [stderr]    Compiling csv v1.1.1
[INFO] [stderr]    Compiling structopt v0.3.2
[INFO] [stderr]    Compiling rasusa v0.2.0 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished dev [unoptimized + debuginfo] target(s) in 2m 05s
[INFO] running `"docker" "inspect" "e8e298a09bfcafb1053686fa52c86ae3d1a6e0b708812c2dd270b212dc4170a7"`
[INFO] running `"docker" "rm" "-f" "e8e298a09bfcafb1053686fa52c86ae3d1a6e0b708812c2dd270b212dc4170a7"`
[INFO] [stdout] e8e298a09bfcafb1053686fa52c86ae3d1a6e0b708812c2dd270b212dc4170a7
[INFO] running `"docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=0" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2020-06-03" "test" "--frozen" "--no-run"`
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] [stdout] f325bd1c6ef586f85939466dbd334d554ecc90df01444251538252a9245360f2
[INFO] running `"docker" "start" "-a" "f325bd1c6ef586f85939466dbd334d554ecc90df01444251538252a9245360f2"`
[INFO] [stderr] sudo: setrlimit(RLIMIT_CORE): Operation not permitted
[INFO] [stderr]    Compiling escargot v0.3.1
[INFO] [stderr]    Compiling float-cmp v0.4.0
[INFO] [stderr]    Compiling serde_json v1.0.41
[INFO] [stderr]    Compiling tempfile v3.1.0
[INFO] [stderr]    Compiling predicates v1.0.1
[INFO] [stderr]    Compiling assert_cmd v0.10.2
[INFO] [stderr]    Compiling rasusa v0.2.0 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished test [unoptimized + debuginfo] target(s) in 16.33s
[INFO] running `"docker" "inspect" "f325bd1c6ef586f85939466dbd334d554ecc90df01444251538252a9245360f2"`
[INFO] running `"docker" "rm" "-f" "f325bd1c6ef586f85939466dbd334d554ecc90df01444251538252a9245360f2"`
[INFO] [stdout] f325bd1c6ef586f85939466dbd334d554ecc90df01444251538252a9245360f2
[INFO] running `"docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=0" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2020-06-03" "test" "--frozen"`
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] [stdout] 2e0c3526f942e8c8944d02c8ac3eeaaea3f744de7247f9ac3c87c7ff317e6d9d
[INFO] running `"docker" "start" "-a" "2e0c3526f942e8c8944d02c8ac3eeaaea3f744de7247f9ac3c87c7ff317e6d9d"`
[INFO] [stderr] sudo: setrlimit(RLIMIT_CORE): Operation not permitted
[INFO] [stderr]     Finished test [unoptimized + debuginfo] target(s) in 0.16s
[INFO] [stderr]      Running /opt/rustwide/target/debug/deps/rasusa-7349c87cd3eb4ed6
[INFO] [stdout] 
[INFO] [stdout] running 88 tests
[INFO] [stdout] test cli::tests::float_multiply_with_base_unit ... ok
[INFO] [stdout] test cli::tests::empty_string_is_base_metric_suffix ... ok
[INFO] [stdout] test cli::tests::empty_coverage_returns_err ... ok
[INFO] [stdout] test cli::tests::base_suffix_from_string ... ok
[INFO] [stdout] test cli::tests::float_ending_in_x_coverage_returns_int ... ok
[INFO] [stdout] test cli::tests::divide_u64_by_genome_size ... ok
[INFO] [stdout] test cli::tests::giga_suffix_from_string ... ok
[INFO] [stdout] test cli::tests::int_coverage_returns_int ... ok
[INFO] [stdout] test cli::tests::invalid_coverage_given_raises_error ... ok
[INFO] [stdout] test cli::tests::invalid_suffix_raises_error ... ok
[INFO] [stdout] test cli::tests::float_coverage_returns_int ... ok
[INFO] [stdout] test cli::tests::kilo_suffix_from_string ... ok
[INFO] [stdout] test cli::tests::mega_suffix_from_string ... ok
[INFO] [stdout] test cli::tests::float_without_leading_int_and_suffix_returns_multiplied_float_as_int ... ok
[INFO] [stdout] test cli::tests::int_and_tera_suffix_returns_multiplied_int ... ok
[INFO] [stdout] test cli::tests::float_and_suffix_returns_multiplied_float_as_int ... ok
[INFO] [stdout] test cli::tests::no_coverage_given_raises_error ... ok
[INFO] [stdout] test cli::tests::invalid_seed_given_raises_error ... ok
[INFO] [stdout] test cli::tests::no_input_file_given_raises_error ... ok
[INFO] [stdout] test cli::tests::non_number_coverage_returns_err ... ok
[INFO] [stdout] test cli::tests::int_ending_in_x_coverage_returns_int ... ok
[INFO] [stdout] test cli::tests::int_and_base_suffix_returns_int_without_scaling ... ok
[INFO] [stdout] test cli::tests::float_only_returns_integer ... ok
[INFO] [stdout] test cli::tests::tera_suffix_from_string ... ok
[INFO] [stdout] test cli::tests::int_and_suffix_returns_multiplied_int ... ok
[INFO] [stdout] test cli::tests::no_genome_size_given_raises_error ... ok
[INFO] [stdout] test cli::tests::suffix_with_no_size_returns_error ... ok
[INFO] [stdout] test cli::tests::all_valid_args_with_two_inputs_parsed_as_expected ... ok
[INFO] [stdout] test cli::tests::no_args_given_raises_error ... ok
[INFO] [stdout] test cli::tests::zero_coverage_returns_zero ... ok
[INFO] [stdout] test fastx::tests::compressed_fastq_extension_returns_fastq_filetype ... ok
[INFO] [stdout] test cli::tests::invalid_genome_size_given_raises_error ... ok
[INFO] [stdout] test fastx::tests::compressed_fasta_extension_returns_fasta_filetype ... ok
[INFO] [stdout] test cli::tests::multiply_coverage_by_genome_size ... ok
[INFO] [stdout] test fastx::tests::create_valid_compressed_output_file_and_can_write_to_it ... ok
[INFO] [stdout] test cli::tests::integer_only_returns_integer ... ok
[INFO] [stdout] test fastx::tests::create_invalid_output_file_raises_error ... ok
[INFO] [stdout] test fastx::tests::create_valid_output_file_and_can_write_to_it ... ok
[INFO] [stdout] test fastx::tests::fa_extension_returns_fasta_filetype ... ok
[INFO] [stdout] test fastx::tests::empty_path_raises_error ... ok
[INFO] [stdout] test cli::tests::all_valid_args_parsed_as_expected ... ok
[INFO] [stdout] test fastx::tests::fastx_from_non_fastaq_fails ... ok
[INFO] [stdout] test fastx::tests::fastq_extension_returns_fastq_filetype ... ok
[INFO] [stdout] test fastx::tests::fastx_from_fasta ... ok
[INFO] [stdout] test fastx::tests::fasta_extension_returns_fasta_filetype ... ok
[INFO] [stdout] test fastx::tests::file_type_from_str_invalid_extension_raises_error ... ok
[INFO] [stdout] test fastx::tests::file_type_from_str_fq_extension_returns_fastq_filetype ... ok
[INFO] [stdout] test fastx::tests::filter_fasta_reads_one_index_matches_only_read ... ok
[INFO] [stdout] test fastx::tests::filter_fastq_reads_one_index_matches_only_read ... ok
[INFO] [stdout] test fastx::tests::filter_fastq_reads_one_index_out_of_range ... ok
[INFO] [stdout] test fastx::tests::filter_fastq_reads_one_index_matches_one_of_two_reads ... ok
[INFO] [stdout] test fastx::tests::filter_reads_empty_indices_no_output ... ok
[INFO] [stdout] test fastx::tests::fq_extension_returns_fastq_filetype ... ok
[INFO] [stdout] test fastx::tests::filter_fastq_reads_two_indices_matches_first_and_last_reads ... ok
[INFO] [stdout] test fastx::tests::get_read_lengths_for_empty_fasta_returns_empty_vector ... ok
[INFO] [stdout] test fastx::tests::get_read_lengths_for_fasta ... ok
[INFO] [stdout] test fastx::tests::get_read_lengths_for_fastq ... ok
[INFO] [stdout] test fastx::tests::no_extension_raises_error ... ok
[INFO] [stdout] test fastx::tests::open_invalid_input_file_raises_error ... ok
[INFO] [stdout] test fastx::tests::filter_fasta_reads_one_index_out_of_range ... ok
[INFO] [stdout] test fastx::tests::file_type_from_str_compressed_fastq_extension_returns_fastq_filetype ... ok
[INFO] [stdout] test fastx::tests::open_valid_compressed_fastq_file ... ok
[INFO] [stdout] test fastx::tests::invalid_extension_raises_error ... ok
[INFO] [stdout] test subsampler::tests::shuffled_indices_for_empty_vector_returns_empty ... ok
[INFO] [stdout] test fastx::tests::path_is_compressed ... ok
[INFO] [stdout] test fastx::tests::open_valid_fastq_file ... ok
[INFO] [stdout] test fastx::tests::path_is_not_compressed ... ok
[INFO] [stdout] test subsampler::tests::shuffled_indices_for_vector_len_two_does_shuffle ... ok
[INFO] [stdout] test subsampler::tests::subsample_one_length_greater_than_target_returns_zero ... ok
[INFO] [stdout] test cli::tests::all_valid_args_with_two_inputs_using_flag_twice_parsed_as_expected ... ok
[INFO] [stdout] test subsampler::tests::subsample_one_length_less_than_target_returns_zero ... ok
[INFO] [stdout] test cli::tests::one_input_two_outputs_raises_error ... ok
[INFO] [stdout] test subsampler::tests::subsample_empty_lengths_returns_empty ... ok
[INFO] [stdout] test subsampler::tests::subsample_one_length_target_zero_returns_empty ... ok
[INFO] [stdout] test subsampler::tests::subsample_three_lengths_sum_greater_than_target_returns_two ... ok
[INFO] [stdout] test subsampler::tests::subsample_three_lengths_sum_equal_target_returns_three ... ok
[INFO] [stdout] test subsampler::tests::subsample_three_lengths_sum_less_than_target_returns_three ... ok
[INFO] [stdout] test subsampler::tests::shuffled_indices_for_vector_len_one_returns_zero ... ok
[INFO] [stdout] test subsampler::tests::subsample_three_lengths_all_greater_than_target_returns_two ... ok
[INFO] [stdout] test subsampler::tests::shuffled_indices_with_seed_produces_same_ordering ... ok
[INFO] [stdout] test cli::tests::two_input_two_outputs_is_ok ... ok
[INFO] [stdout] test cli::tests::empty_string_returns_error ... ok
[INFO] [stdout] test cli::tests::invalid_suffix_returns_err ... ok
[INFO] [stdout] test cli::tests::three_inputs_raises_error ... ok
[INFO] [stdout] test cli::tests::multiply_genome_size_by_coverage ... ok
[INFO] [stdout] test cli::tests::two_inputs_one_output_raises_error ... ok
[INFO] [stdout] test cli::tests::three_outputs_raises_error ... ok
[INFO] [stdout] test cli::tests::one_input_no_output_is_ok ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 88 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out
[INFO] [stdout] 
[INFO] [stderr]      Running /opt/rustwide/target/debug/deps/main-8efa8b279863ce48
[INFO] [stdout] 
[INFO] [stdout] running 8 tests
[INFO] [stdout] test invalid_input_and_output_combination_raises_error ... test invalid_input_and_output_combination_raises_error has been running for over 60 seconds
[INFO] [stdout] test two_valid_illumina_inputs_suceeds ... test two_valid_illumina_inputs_suceeds has been running for over 60 seconds
[INFO] [stdout] test input_file_doesnt_exist ... test input_file_doesnt_exist has been running for over 60 seconds
[INFO] [stdout] test input_and_output_filetypes_different_raises_no_errors_but_warns ... test input_and_output_filetypes_different_raises_no_errors_but_warns has been running for over 60 seconds
[INFO] [stdout] test output_file_in_nonexistant_dir ... test output_file_in_nonexistant_dir has been running for over 60 seconds
[INFO] [stdout] test invalid_input_file ... test invalid_input_file has been running for over 60 seconds
[INFO] [stdout] test unequal_number_of_reads_in_inputs_raises_no_errors_but_prints_error_msg ... test unequal_number_of_reads_in_inputs_raises_no_errors_but_prints_error_msg has been running for over 60 seconds
[INFO] [stdout] test valid_inputs_raises_no_errors ... test valid_inputs_raises_no_errors has been running for over 60 seconds
[INFO] [stdout] test unequal_number_of_reads_in_inputs_raises_no_errors_but_prints_error_msg ... ok
[INFO] [stdout] test input_and_output_filetypes_different_raises_no_errors_but_warns ... ok
[INFO] [stdout] test two_valid_illumina_inputs_suceeds ... ok
[INFO] [stdout] test input_file_doesnt_exist ... ok
[INFO] [stdout] test invalid_input_file ... ok
[INFO] [stdout] test valid_inputs_raises_no_errors ... ok
[INFO] [stdout] test invalid_input_and_output_combination_raises_error ... ok
[INFO] [stdout] test output_file_in_nonexistant_dir ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 8 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out
[INFO] [stdout] 
[INFO] running `"docker" "inspect" "2e0c3526f942e8c8944d02c8ac3eeaaea3f744de7247f9ac3c87c7ff317e6d9d"`
[INFO] running `"docker" "rm" "-f" "2e0c3526f942e8c8944d02c8ac3eeaaea3f744de7247f9ac3c87c7ff317e6d9d"`
[INFO] [stdout] 2e0c3526f942e8c8944d02c8ac3eeaaea3f744de7247f9ac3c87c7ff317e6d9d