[INFO] updating cached repository https://github.com/mal2017/csc [INFO] running `"git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "-c" "remote.origin.fetch=refs/heads/*:refs/heads/*" "fetch" "origin" "--force" "--prune"` [INFO] running `"git" "rev-parse" "HEAD"` [INFO] [stdout] d03c33ee5c6bc2e7583bd50315cc6203d9f34510 [INFO] testing mal2017/csc against beta-2020-06-03 for beta-1.45-1 [INFO] running `"git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fmal2017%2Fcsc" "/workspace/builds/worker-6/source"` [INFO] [stderr] Cloning into '/workspace/builds/worker-6/source'... [INFO] [stderr] done. [INFO] validating manifest of git repo https://github.com/mal2017/csc on toolchain beta-2020-06-03 [INFO] running `"/workspace/cargo-home/bin/cargo" "+beta-2020-06-03" "read-manifest" "--manifest-path" "Cargo.toml"` [INFO] started tweaking git repo https://github.com/mal2017/csc [INFO] finished tweaking git repo https://github.com/mal2017/csc [INFO] tweaked toml for git repo https://github.com/mal2017/csc written to /workspace/builds/worker-6/source/Cargo.toml [INFO] crate git repo https://github.com/mal2017/csc already has a lockfile, it will not be regenerated [INFO] running `"/workspace/cargo-home/bin/cargo" "+beta-2020-06-03" "fetch" "--locked" "--manifest-path" "Cargo.toml"` [INFO] running `"docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=0" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2020-06-03" "build" "--frozen"` [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] [stdout] 8d8b5602bf517035c1a2105dfd6f0c9b130effc7fe6a96cf2e2562a1ec3a76a7 [INFO] running `"docker" "start" "-a" "8d8b5602bf517035c1a2105dfd6f0c9b130effc7fe6a96cf2e2562a1ec3a76a7"` [INFO] [stderr] sudo: setrlimit(RLIMIT_CORE): Operation not permitted [INFO] [stderr] Compiling libc v0.2.51 [INFO] [stderr] Compiling cc v1.0.35 [INFO] [stderr] Compiling proc-macro2 v0.4.27 [INFO] [stderr] Compiling syn v0.15.31 [INFO] [stderr] Compiling memchr v2.2.0 [INFO] [stderr] Compiling serde v1.0.90 [INFO] [stderr] Compiling cfg-if v0.1.7 [INFO] [stderr] Compiling num-traits v0.2.6 [INFO] [stderr] Compiling regex v1.1.5 [INFO] [stderr] Compiling quick-error v1.2.2 [INFO] [stderr] Compiling pkg-config v0.3.14 [INFO] [stderr] Compiling glob v0.2.11 [INFO] [stderr] Compiling either v1.5.2 [INFO] [stderr] Compiling regex v0.2.11 [INFO] [stderr] Compiling semver v0.1.20 [INFO] [stderr] Compiling arrayvec v0.4.10 [INFO] [stderr] Compiling yaml-rust v0.3.5 [INFO] [stderr] Compiling bindgen v0.36.1 [INFO] [stderr] Compiling termcolor v1.0.4 [INFO] [stderr] Compiling byteorder v1.3.1 [INFO] [stderr] Compiling matrixmultiply v0.1.15 [INFO] [stderr] Compiling feature-probe v0.1.1 [INFO] [stderr] Compiling nodrop v0.1.13 [INFO] [stderr] Compiling ryu v0.2.7 [INFO] [stderr] Compiling num-complex v0.2.1 [INFO] [stderr] Compiling peeking_take_while v0.1.2 [INFO] [stderr] Compiling rawpointer v0.1.0 [INFO] [stderr] Compiling num-integer v0.1.39 [INFO] [stderr] Compiling ndarray v0.12.1 [INFO] [stderr] Compiling rayon-core v1.4.1 [INFO] [stderr] Compiling bit-vec v0.5.1 [INFO] [stderr] Compiling custom_derive v0.1.7 [INFO] [stderr] Compiling bio v0.25.0 [INFO] [stderr] Compiling itoa v0.4.3 [INFO] [stderr] Compiling bitflags v0.9.1 [INFO] [stderr] Compiling ieee754 v0.2.6 [INFO] [stderr] Compiling rayon v1.0.3 [INFO] [stderr] Compiling linear-map v1.2.0 [INFO] [stderr] Compiling bytecount v0.3.2 [INFO] [stderr] Compiling proc-macro2 v0.3.5 [INFO] [stderr] Compiling regex-syntax v0.5.6 [INFO] [stderr] Compiling log v0.4.6 [INFO] [stderr] Compiling crossbeam-utils v0.2.2 [INFO] [stderr] Compiling humantime v1.2.0 [INFO] [stderr] Compiling fs-utils v1.1.0 [INFO] [stderr] Compiling itertools v0.7.11 [INFO] [stderr] Compiling itertools v0.6.5 [INFO] [stderr] Compiling itertools v0.8.0 [INFO] [stderr] Compiling rustc_version v0.1.7 [INFO] [stderr] Compiling unicode-normalization v0.1.8 [INFO] [stderr] Compiling bv v0.10.0 [INFO] [stderr] Compiling clang-sys v0.22.0 [INFO] [stderr] Compiling bit-set v0.5.1 [INFO] [stderr] Compiling quote v0.5.2 [INFO] [stderr] Compiling newtype_derive v0.1.6 [INFO] [stderr] Compiling memchr v1.0.2 [INFO] [stderr] Compiling atty v0.2.11 [INFO] [stderr] Compiling which v1.0.5 [INFO] [stderr] Compiling rand v0.4.6 [INFO] [stderr] Compiling num_cpus v1.10.0 [INFO] [stderr] Compiling libloading v0.5.0 [INFO] [stderr] Compiling bzip2-sys v0.1.7 [INFO] [stderr] Compiling libz-sys v1.0.25 [INFO] [stderr] Compiling lzma-sys v0.1.14 [INFO] [stderr] Compiling quote v0.6.12 [INFO] [stderr] Compiling fxhash v0.2.1 [INFO] [stderr] Compiling nom v3.2.1 [INFO] [stderr] Compiling crossbeam-epoch v0.3.1 [INFO] [stderr] Compiling aho-corasick v0.7.3 [INFO] [stderr] Compiling aho-corasick v0.6.10 [INFO] [stderr] Compiling csv-core v0.1.5 [INFO] [stderr] Compiling ordered-float v1.0.2 [INFO] [stderr] Compiling approx v0.3.2 [INFO] [stderr] Compiling itertools-num v0.1.3 [INFO] [stderr] Compiling crossbeam-deque v0.2.0 [INFO] [stderr] Compiling idna v0.1.5 [INFO] [stderr] Compiling rand v0.3.23 [INFO] [stderr] Compiling statrs v0.9.0 [INFO] [stderr] Compiling url v1.7.2 [INFO] [stderr] Compiling cexpr v0.2.3 [INFO] [stderr] Compiling env_logger v0.5.13 [INFO] [stderr] Compiling serde_derive v1.0.90 [INFO] [stderr] Compiling vec_map v0.8.1 [INFO] [stderr] Compiling bio-types v0.4.0 [INFO] [stderr] Compiling multimap v0.4.0 [INFO] [stderr] Compiling csv v1.0.7 [INFO] [stderr] Compiling clap v2.32.0 [INFO] [stderr] Compiling rust-htslib v0.22.0 [INFO] [stderr] Compiling ngslib v0.1.0 (https://github.com/mal2017/ngslib.git?tag=0.1.0-alpha.2#b34385bf) [INFO] [stderr] Compiling cutsites v0.1.0 (/opt/rustwide/workdir) [INFO] [stderr] warning: unused import: `bio::io::bed::*` [INFO] [stderr] --> src/main.rs:10:5 [INFO] [stderr] | [INFO] [stderr] 10 | use bio::io::bed::*; [INFO] [stderr] | ^^^^^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(unused_imports)]` on by default [INFO] [stderr] [INFO] [stderr] warning: unused import: `bio::io::bed::Record` [INFO] [stderr] --> src/main.rs:11:5 [INFO] [stderr] | [INFO] [stderr] 11 | use bio::io::bed::Record; [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: unused import: `itertools::Itertools` [INFO] [stderr] --> src/main.rs:19:5 [INFO] [stderr] | [INFO] [stderr] 19 | use itertools::Itertools; [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: unused import: `ArgGroup` [INFO] [stderr] --> src/main.rs:25:26 [INFO] [stderr] | [INFO] [stderr] 25 | use clap::{App, Arg, ArgGroup}; [INFO] [stderr] | ^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: variable does not need to be mutable [INFO] [stderr] --> src/main.rs:101:9 [INFO] [stderr] | [INFO] [stderr] 101 | let mut bam = bam::IndexedReader::from_path(bp).unwrap(); [INFO] [stderr] | ----^^^ [INFO] [stderr] | | [INFO] [stderr] | help: remove this `mut` [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(unused_mut)]` on by default [INFO] [stderr] [INFO] [stderr] warning: 5 warnings emitted [INFO] [stderr] [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 3m 08s [INFO] running `"docker" "inspect" "8d8b5602bf517035c1a2105dfd6f0c9b130effc7fe6a96cf2e2562a1ec3a76a7"` [INFO] running `"docker" "rm" "-f" "8d8b5602bf517035c1a2105dfd6f0c9b130effc7fe6a96cf2e2562a1ec3a76a7"` [INFO] [stdout] 8d8b5602bf517035c1a2105dfd6f0c9b130effc7fe6a96cf2e2562a1ec3a76a7 [INFO] running `"docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=0" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2020-06-03" "test" "--frozen" "--no-run"` [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] [stdout] 68ea1cd7a5250845cc724dea939352aac231dca39e46bc97b89219ccfd3ee845 [INFO] running `"docker" "start" "-a" "68ea1cd7a5250845cc724dea939352aac231dca39e46bc97b89219ccfd3ee845"` [INFO] [stderr] sudo: setrlimit(RLIMIT_CORE): Operation not permitted [INFO] [stderr] Compiling cutsites v0.1.0 (/opt/rustwide/workdir) [INFO] [stderr] warning: unused import: `bio::io::bed::*` [INFO] [stderr] --> src/main.rs:10:5 [INFO] [stderr] | [INFO] [stderr] 10 | use bio::io::bed::*; [INFO] [stderr] | ^^^^^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(unused_imports)]` on by default [INFO] [stderr] [INFO] [stderr] warning: unused import: `bio::io::bed::Record` [INFO] [stderr] --> src/main.rs:11:5 [INFO] [stderr] | [INFO] [stderr] 11 | use bio::io::bed::Record; [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: unused import: `itertools::Itertools` [INFO] [stderr] --> src/main.rs:19:5 [INFO] [stderr] | [INFO] [stderr] 19 | use itertools::Itertools; [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: unused import: `ArgGroup` [INFO] [stderr] --> src/main.rs:25:26 [INFO] [stderr] | [INFO] [stderr] 25 | use clap::{App, Arg, ArgGroup}; [INFO] [stderr] | ^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: variable does not need to be mutable [INFO] [stderr] --> src/main.rs:101:9 [INFO] [stderr] | [INFO] [stderr] 101 | let mut bam = bam::IndexedReader::from_path(bp).unwrap(); [INFO] [stderr] | ----^^^ [INFO] [stderr] | | [INFO] [stderr] | help: remove this `mut` [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(unused_mut)]` on by default [INFO] [stderr] [INFO] [stderr] warning: 5 warnings emitted [INFO] [stderr] [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 1.05s [INFO] running `"docker" "inspect" "68ea1cd7a5250845cc724dea939352aac231dca39e46bc97b89219ccfd3ee845"` [INFO] running `"docker" "rm" "-f" "68ea1cd7a5250845cc724dea939352aac231dca39e46bc97b89219ccfd3ee845"` [INFO] [stdout] 68ea1cd7a5250845cc724dea939352aac231dca39e46bc97b89219ccfd3ee845 [INFO] running `"docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=0" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2020-06-03" "test" "--frozen"` [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] [stdout] 0a16052a1aed3be415282e2fe9d98f9aa433343e7080c92e6b401e32028de713 [INFO] running `"docker" "start" "-a" "0a16052a1aed3be415282e2fe9d98f9aa433343e7080c92e6b401e32028de713"` [INFO] [stderr] sudo: setrlimit(RLIMIT_CORE): Operation not permitted [INFO] [stderr] warning: unused import: `bio::io::bed::*` [INFO] [stderr] --> src/main.rs:10:5 [INFO] [stderr] | [INFO] [stderr] 10 | use bio::io::bed::*; [INFO] [stderr] | ^^^^^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(unused_imports)]` on by default [INFO] [stderr] [INFO] [stderr] warning: unused import: `bio::io::bed::Record` [INFO] [stderr] --> src/main.rs:11:5 [INFO] [stderr] | [INFO] [stderr] 11 | use bio::io::bed::Record; [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: unused import: `itertools::Itertools` [INFO] [stderr] --> src/main.rs:19:5 [INFO] [stderr] | [INFO] [stderr] 19 | use itertools::Itertools; [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: unused import: `ArgGroup` [INFO] [stderr] --> src/main.rs:25:26 [INFO] [stderr] | [INFO] [stderr] 25 | use clap::{App, Arg, ArgGroup}; [INFO] [stderr] | ^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: variable does not need to be mutable [INFO] [stderr] --> src/main.rs:101:9 [INFO] [stderr] | [INFO] [stderr] 101 | let mut bam = bam::IndexedReader::from_path(bp).unwrap(); [INFO] [stderr] | ----^^^ [INFO] [stderr] | | [INFO] [stderr] | help: remove this `mut` [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(unused_mut)]` on by default [INFO] [stderr] [INFO] [stderr] warning: 5 warnings emitted [INFO] [stderr] [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 0.19s [INFO] [stderr] Running /opt/rustwide/target/debug/deps/cutsites-fe63a15ad4aa5aaa [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out [INFO] [stdout] [INFO] running `"docker" "inspect" "0a16052a1aed3be415282e2fe9d98f9aa433343e7080c92e6b401e32028de713"` [INFO] running `"docker" "rm" "-f" "0a16052a1aed3be415282e2fe9d98f9aa433343e7080c92e6b401e32028de713"` [INFO] [stdout] 0a16052a1aed3be415282e2fe9d98f9aa433343e7080c92e6b401e32028de713