[INFO] updating cached repository https://github.com/bihealth/var-agg
[INFO] running `"git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "-c" "remote.origin.fetch=refs/heads/*:refs/heads/*" "fetch" "origin" "--force" "--prune"`
[INFO] running `"git" "rev-parse" "HEAD"`
[INFO] [stdout] 471f9e96eaae18d5d3b9ded56b29fc186f420178
[INFO] testing bihealth/var-agg against beta-2020-06-03 for beta-1.45-1
[INFO] running `"git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fbihealth%2Fvar-agg" "/workspace/builds/worker-4/source"`
[INFO] [stderr] Cloning into '/workspace/builds/worker-4/source'...
[INFO] [stderr] done.
[INFO] validating manifest of git repo https://github.com/bihealth/var-agg on toolchain beta-2020-06-03
[INFO] running `"/workspace/cargo-home/bin/cargo" "+beta-2020-06-03" "read-manifest" "--manifest-path" "Cargo.toml"`
[INFO] started tweaking git repo https://github.com/bihealth/var-agg
[INFO] finished tweaking git repo https://github.com/bihealth/var-agg
[INFO] tweaked toml for git repo https://github.com/bihealth/var-agg written to /workspace/builds/worker-4/source/Cargo.toml
[INFO] crate git repo https://github.com/bihealth/var-agg already has a lockfile, it will not be regenerated
[INFO] running `"/workspace/cargo-home/bin/cargo" "+beta-2020-06-03" "fetch" "--locked" "--manifest-path" "Cargo.toml"`
[INFO] running `"docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=0" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2020-06-03" "build" "--frozen"`
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] [stdout] 187862e19f1dc3431fedecd19886049fe2a0d30707a25cb4bd6910ebfa322b19
[INFO] running `"docker" "start" "-a" "187862e19f1dc3431fedecd19886049fe2a0d30707a25cb4bd6910ebfa322b19"`
[INFO] [stderr] sudo: setrlimit(RLIMIT_CORE): Operation not permitted
[INFO] [stderr]    Compiling proc-macro2 v0.4.17
[INFO] [stderr]    Compiling version_check v0.1.4
[INFO] [stderr]    Compiling cc v1.0.23
[INFO] [stderr]    Compiling serde v1.0.76
[INFO] [stderr]    Compiling num-traits v0.2.5
[INFO] [stderr]    Compiling regex v1.0.4
[INFO] [stderr]    Compiling semver v0.1.20
[INFO] [stderr]    Compiling termcolor v1.0.3
[INFO] [stderr]    Compiling bindgen v0.36.1
[INFO] [stderr]    Compiling yaml-rust v0.3.5
[INFO] [stderr]    Compiling num-integer v0.1.39
[INFO] [stderr]    Compiling matrixmultiply v0.1.14
[INFO] [stderr]    Compiling ndarray v0.9.1
[INFO] [stderr]    Compiling bv v0.7.4
[INFO] [stderr]    Compiling slog v2.3.3
[INFO] [stderr]    Compiling custom_derive v0.1.7
[INFO] [stderr]    Compiling bit-vec v0.4.4
[INFO] [stderr]    Compiling take_mut v0.2.2
[INFO] [stderr]    Compiling approx v0.1.1
[INFO] [stderr]    Compiling linear-map v1.2.0
[INFO] [stderr]    Compiling ieee754 v0.2.2
[INFO] [stderr]    Compiling bytecount v0.3.2
[INFO] [stderr]    Compiling memchr v2.0.2
[INFO] [stderr]    Compiling memchr v1.0.2
[INFO] [stderr]    Compiling proc-macro2 v0.3.5
[INFO] [stderr]    Compiling which v1.0.5
[INFO] [stderr]    Compiling fs-utils v1.1.0
[INFO] [stderr]    Compiling isatty v0.1.8
[INFO] [stderr]    Compiling clang-sys v0.22.0
[INFO] [stderr]    Compiling fxhash v0.2.1
[INFO] [stderr]    Compiling term v0.5.1
[INFO] [stderr]    Compiling itertools v0.6.5
[INFO] [stderr]    Compiling unreachable v0.1.1
[INFO] [stderr]    Compiling rustc_version v0.1.7
[INFO] [stderr]    Compiling bit-set v0.4.0
[INFO] [stderr]    Compiling lazy_static v1.1.0
[INFO] [stderr]    Compiling nom v3.2.1
[INFO] [stderr]    Compiling aho-corasick v0.6.8
[INFO] [stderr]    Compiling csv-core v0.1.4
[INFO] [stderr]    Compiling statrs v0.9.0
[INFO] [stderr]    Compiling quote v0.5.2
[INFO] [stderr]    Compiling newtype_derive v0.1.6
[INFO] [stderr]    Compiling thread_local v0.3.6
[INFO] [stderr]    Compiling regex v0.2.11
[INFO] [stderr]    Compiling slog-async v2.3.0
[INFO] [stderr]    Compiling quote v0.6.8
[INFO] [stderr]    Compiling libloading v0.5.0
[INFO] [stderr]    Compiling backtrace-sys v0.1.24
[INFO] [stderr]    Compiling syn v0.14.9
[INFO] [stderr]    Compiling cexpr v0.2.3
[INFO] [stderr]    Compiling num-traits v0.1.43
[INFO] [stderr]    Compiling num-complex v0.1.43
[INFO] [stderr]    Compiling itertools-num v0.1.2
[INFO] [stderr]    Compiling ordered-float v0.5.0
[INFO] [stderr]    Compiling backtrace v0.3.9
[INFO] [stderr]    Compiling chrono v0.4.6
[INFO] [stderr]    Compiling error-chain v0.12.0
[INFO] [stderr]    Compiling env_logger v0.5.13
[INFO] [stderr]    Compiling slog-term v2.4.0
[INFO] [stderr]    Compiling serde_derive v1.0.76
[INFO] [stderr]    Compiling vec_map v0.8.1
[INFO] [stderr]    Compiling bio-types v0.2.0
[INFO] [stderr]    Compiling csv v1.0.1
[INFO] [stderr]    Compiling multimap v0.4.0
[INFO] [stderr]    Compiling clap v2.32.0
[INFO] [stderr]    Compiling bio v0.22.0
[INFO] [stderr]    Compiling rust-htslib v0.21.0
[INFO] [stderr]    Compiling var-agg v0.1.1 (/opt/rustwide/workdir)
[INFO] [stderr] warning: the item `rust_htslib` is imported redundantly
[INFO] [stderr]   --> src/bcf_utils.rs:14:13
[INFO] [stderr]    |
[INFO] [stderr] 4  | use rust_htslib;
[INFO] [stderr]    |     ----------- the item `rust_htslib` is already imported here
[INFO] [stderr] ...
[INFO] [stderr] 14 |         use rust_htslib;
[INFO] [stderr]    |             ^^^^^^^^^^^
[INFO] [stderr]    |
[INFO] [stderr]    = note: `#[warn(unused_imports)]` on by default
[INFO] [stderr] 
[INFO] [stderr] warning: the item `ffi` is imported redundantly
[INFO] [stderr]   --> src/bcf_utils.rs:15:13
[INFO] [stderr]    |
[INFO] [stderr] 5  | use std::ffi;
[INFO] [stderr]    |     -------- the item `ffi` is already imported here
[INFO] [stderr] ...
[INFO] [stderr] 15 |         use std::ffi;
[INFO] [stderr]    |             ^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: 2 warnings emitted
[INFO] [stderr] 
[INFO] [stderr]     Finished dev [unoptimized + debuginfo] target(s) in 3m 23s
[INFO] running `"docker" "inspect" "187862e19f1dc3431fedecd19886049fe2a0d30707a25cb4bd6910ebfa322b19"`
[INFO] running `"docker" "rm" "-f" "187862e19f1dc3431fedecd19886049fe2a0d30707a25cb4bd6910ebfa322b19"`
[INFO] [stdout] 187862e19f1dc3431fedecd19886049fe2a0d30707a25cb4bd6910ebfa322b19
[INFO] running `"docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=0" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2020-06-03" "test" "--frozen" "--no-run"`
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] [stdout] fd2ed03c93f053e7bd599439d1165f7fe1cf66df7f2cd4844b22bee538e4c1b6
[INFO] running `"docker" "start" "-a" "fd2ed03c93f053e7bd599439d1165f7fe1cf66df7f2cd4844b22bee538e4c1b6"`
[INFO] [stderr] sudo: setrlimit(RLIMIT_CORE): Operation not permitted
[INFO] [stderr]    Compiling var-agg v0.1.1 (/opt/rustwide/workdir)
[INFO] [stderr] warning: the item `rust_htslib` is imported redundantly
[INFO] [stderr]   --> src/bcf_utils.rs:14:13
[INFO] [stderr]    |
[INFO] [stderr] 4  | use rust_htslib;
[INFO] [stderr]    |     ----------- the item `rust_htslib` is already imported here
[INFO] [stderr] ...
[INFO] [stderr] 14 |         use rust_htslib;
[INFO] [stderr]    |             ^^^^^^^^^^^
[INFO] [stderr]    |
[INFO] [stderr]    = note: `#[warn(unused_imports)]` on by default
[INFO] [stderr] 
[INFO] [stderr] warning: the item `ffi` is imported redundantly
[INFO] [stderr]   --> src/bcf_utils.rs:15:13
[INFO] [stderr]    |
[INFO] [stderr] 5  | use std::ffi;
[INFO] [stderr]    |     -------- the item `ffi` is already imported here
[INFO] [stderr] ...
[INFO] [stderr] 15 |         use std::ffi;
[INFO] [stderr]    |             ^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: 2 warnings emitted
[INFO] [stderr] 
[INFO] [stderr]     Finished test [unoptimized + debuginfo] target(s) in 1.64s
[INFO] running `"docker" "inspect" "fd2ed03c93f053e7bd599439d1165f7fe1cf66df7f2cd4844b22bee538e4c1b6"`
[INFO] running `"docker" "rm" "-f" "fd2ed03c93f053e7bd599439d1165f7fe1cf66df7f2cd4844b22bee538e4c1b6"`
[INFO] [stdout] fd2ed03c93f053e7bd599439d1165f7fe1cf66df7f2cd4844b22bee538e4c1b6
[INFO] running `"docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=0" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2020-06-03" "test" "--frozen"`
[INFO] [stdout] d4c891a833883db2395fa1259e17e952196cd2e2d722927307bbb5a1bc83bb64
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] running `"docker" "start" "-a" "d4c891a833883db2395fa1259e17e952196cd2e2d722927307bbb5a1bc83bb64"`
[INFO] [stderr] sudo: setrlimit(RLIMIT_CORE): Operation not permitted
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr] warning: the item `rust_htslib` is imported redundantly
[INFO] [stderr]   --> src/bcf_utils.rs:14:13
[INFO] [stderr]    |
[INFO] [stderr] 4  | use rust_htslib;
[INFO] [stderr]    |     ----------- the item `rust_htslib` is already imported here
[INFO] [stderr] ...
[INFO] [stderr] 14 |         use rust_htslib;
[INFO] [stderr]    |             ^^^^^^^^^^^
[INFO] [stderr]    |
[INFO] [stderr]    = note: `#[warn(unused_imports)]` on by default
[INFO] [stderr] 
[INFO] [stderr] warning: the item `ffi` is imported redundantly
[INFO] [stderr]   --> src/bcf_utils.rs:15:13
[INFO] [stderr]    |
[INFO] [stderr] 5  | use std::ffi;
[INFO] [stderr]    |     -------- the item `ffi` is already imported here
[INFO] [stderr] ...
[INFO] [stderr] 15 |         use std::ffi;
[INFO] [stderr]    |             ^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: 2 warnings emitted
[INFO] [stderr] 
[INFO] [stderr]     Finished test [unoptimized + debuginfo] target(s) in 2.65s
[INFO] [stderr]      Running /opt/rustwide/target/debug/deps/var_agg-a4d389d81d493526
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out
[INFO] [stdout] 
[INFO] running `"docker" "inspect" "d4c891a833883db2395fa1259e17e952196cd2e2d722927307bbb5a1bc83bb64"`
[INFO] running `"docker" "rm" "-f" "d4c891a833883db2395fa1259e17e952196cd2e2d722927307bbb5a1bc83bb64"`
[INFO] [stdout] d4c891a833883db2395fa1259e17e952196cd2e2d722927307bbb5a1bc83bb64