[INFO] cloning repository https://github.com/Mimerme/Mimerme [INFO] running `"git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/Mimerme/Mimerme" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FMimerme%2FMimerme"` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FMimerme%2FMimerme'... [INFO] running `"git" "rev-parse" "HEAD"` [INFO] [stdout] df63a69dd00123b2eb2ab3520f84fe54a79a107d [INFO] testing Mimerme/Mimerme against beta-2020-06-03 for beta-1.45-1 [INFO] running `"git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FMimerme%2FMimerme" "/workspace/builds/worker-1/source"` [INFO] [stderr] Cloning into '/workspace/builds/worker-1/source'... [INFO] [stderr] done. [INFO] validating manifest of git repo https://github.com/Mimerme/Mimerme on toolchain beta-2020-06-03 [INFO] running `"/workspace/cargo-home/bin/cargo" "+beta-2020-06-03" "read-manifest" "--manifest-path" "Cargo.toml"` [INFO] started tweaking git repo https://github.com/Mimerme/Mimerme [INFO] finished tweaking git repo https://github.com/Mimerme/Mimerme [INFO] tweaked toml for git repo https://github.com/Mimerme/Mimerme written to /workspace/builds/worker-1/source/Cargo.toml [INFO] crate git repo https://github.com/Mimerme/Mimerme already has a lockfile, it will not be regenerated [INFO] running `"/workspace/cargo-home/bin/cargo" "+beta-2020-06-03" "fetch" "--locked" "--manifest-path" "Cargo.toml"` [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded rust-htslib v0.29.0 [INFO] [stderr] Downloaded hts-sys v1.10.2 [INFO] running `"docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=0" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2020-06-03" "build" "--frozen"` [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] [stdout] 85280f1acd6f31eb14d01e51648a9294951fe90be19eb7ff0d073d2340739c3f [INFO] running `"docker" "start" "-a" "85280f1acd6f31eb14d01e51648a9294951fe90be19eb7ff0d073d2340739c3f"` [INFO] [stderr] sudo: setrlimit(RLIMIT_CORE): Operation not permitted [INFO] [stderr] Compiling proc-macro2 v1.0.9 [INFO] [stderr] Compiling cc v1.0.50 [INFO] [stderr] Compiling syn v1.0.17 [INFO] [stderr] Compiling version_check v0.9.1 [INFO] [stderr] Compiling libc v0.2.68 [INFO] [stderr] Compiling glob v0.3.0 [INFO] [stderr] Compiling regex-syntax v0.6.17 [INFO] [stderr] Compiling bindgen v0.53.2 [INFO] [stderr] Compiling pkg-config v0.3.17 [INFO] [stderr] Compiling semver v0.1.20 [INFO] [stderr] Compiling lazycell v1.2.1 [INFO] [stderr] Compiling peeking_take_while v0.1.2 [INFO] [stderr] Compiling shlex v0.1.1 [INFO] [stderr] Compiling rustc-hash v1.1.0 [INFO] [stderr] Compiling serde v1.0.105 [INFO] [stderr] Compiling smallvec v1.2.0 [INFO] [stderr] Compiling doc-comment v0.3.3 [INFO] [stderr] Compiling matches v0.1.8 [INFO] [stderr] Compiling byteorder v1.3.4 [INFO] [stderr] Compiling percent-encoding v2.1.0 [INFO] [stderr] Compiling either v1.5.3 [INFO] [stderr] Compiling custom_derive v0.1.7 [INFO] [stderr] Compiling linear-map v1.2.0 [INFO] [stderr] Compiling ieee754 v0.2.6 [INFO] [stderr] Compiling fs-utils v1.1.4 [INFO] [stderr] Compiling unicode-bidi v0.3.4 [INFO] [stderr] Compiling rustc_version v0.1.7 [INFO] [stderr] Compiling unicode-normalization v0.1.12 [INFO] [stderr] Compiling itertools v0.8.2 [INFO] [stderr] Compiling nom v5.1.1 [INFO] [stderr] Compiling newtype_derive v0.1.6 [INFO] [stderr] Compiling clang-sys v0.29.2 [INFO] [stderr] Compiling libloading v0.5.2 [INFO] [stderr] Compiling libz-sys v1.0.25 [INFO] [stderr] Compiling quote v1.0.3 [INFO] [stderr] Compiling idna v0.2.0 [INFO] [stderr] Compiling url v2.1.1 [INFO] [stderr] Compiling regex v1.3.6 [INFO] [stderr] Compiling cexpr v0.4.0 [INFO] [stderr] Compiling serde_derive v1.0.105 [INFO] [stderr] Compiling derive-new v0.5.8 [INFO] [stderr] Compiling snafu-derive v0.6.3 [INFO] [stderr] Compiling snafu v0.6.0 [INFO] [stderr] Compiling hts-sys v1.10.2 [INFO] [stderr] Compiling bio-types v0.6.0 [INFO] [stderr] Compiling bincode v1.2.1 [INFO] [stderr] error: failed to run custom build command for `hts-sys v1.10.2` [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] process didn't exit successfully: `/opt/rustwide/target/debug/build/hts-sys-fa7c95155d168014/build-script-build` (exit code: 101) [INFO] [stderr] --- stdout [INFO] [stderr] OPT_LEVEL = Some("0") [INFO] [stderr] TARGET = Some("x86_64-unknown-linux-gnu") [INFO] [stderr] HOST = Some("x86_64-unknown-linux-gnu") [INFO] [stderr] CC_x86_64-unknown-linux-gnu = None [INFO] [stderr] CC_x86_64_unknown_linux_gnu = None [INFO] [stderr] HOST_CC = None [INFO] [stderr] CC = None [INFO] [stderr] CFLAGS_x86_64-unknown-linux-gnu = None [INFO] [stderr] CFLAGS_x86_64_unknown_linux_gnu = None [INFO] [stderr] HOST_CFLAGS = None [INFO] [stderr] CFLAGS = None [INFO] [stderr] CRATE_CC_NO_DEFAULTS = None [INFO] [stderr] DEBUG = Some("true") [INFO] [stderr] echo '/* Default config.h generated by Makefile */' > config.h [INFO] [stderr] echo '#ifndef __APPLE__' >> config.h [INFO] [stderr] echo '#define HAVE_LZMA_H 1' >> config.h [INFO] [stderr] echo '#endif' >> config.h [INFO] [stderr] echo '#define HAVE_DRAND48 1' >> config.h [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I. -c -o kfunc.o kfunc.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I. -c -o knetfile.o knetfile.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I. -c -o kstring.o kstring.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I. -c -o bcf_sr_sort.o bcf_sr_sort.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I. -c -o bgzf.o bgzf.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I. -c -o errmod.o errmod.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I. -c -o faidx.o faidx.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I. -c -o header.o header.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I. -c -o hfile.o hfile.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I. -c -o hfile_net.o hfile_net.c [INFO] [stderr] echo '#define HTS_VERSION_TEXT "1.10.2"' > version.h [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I. -c -o hts.o hts.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I. -c -o hts_os.o hts_os.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I. -c -o md5.o md5.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I. -c -o multipart.o multipart.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I. -c -o probaln.o probaln.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I. -c -o realn.o realn.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I. -c -o regidx.o regidx.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I. -c -o region.o region.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I. -c -o sam.o sam.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I. -c -o synced_bcf_reader.o synced_bcf_reader.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I. -c -o vcf_sweep.o vcf_sweep.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I. -c -o tbx.o tbx.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I. -c -o textutils.o textutils.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I. -c -o thread_pool.o thread_pool.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I. -c -o vcf.o vcf.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I. -c -o vcfutils.o vcfutils.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I. -c -o cram/cram_codecs.o cram/cram_codecs.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I. -c -o cram/cram_decode.o cram/cram_decode.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I. -c -o cram/cram_encode.o cram/cram_encode.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I. -c -o cram/cram_external.o cram/cram_external.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I. -c -o cram/cram_index.o cram/cram_index.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I. -c -o cram/cram_io.o cram/cram_io.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I. -c -o cram/cram_samtools.o cram/cram_samtools.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I. -c -o cram/cram_stats.o cram/cram_stats.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I. -c -o cram/mFILE.o cram/mFILE.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I. -c -o cram/open_trace_file.o cram/open_trace_file.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I. -c -o cram/pooled_alloc.o cram/pooled_alloc.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I. -c -o cram/rANS_static.o cram/rANS_static.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I. -c -o cram/string_alloc.o cram/string_alloc.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I. -c -o hfile_libcurl.o hfile_libcurl.c [INFO] [stderr] [INFO] [stderr] --- stderr [INFO] [stderr] hfile_libcurl.c:47:10: fatal error: curl/curl.h: No such file or directory [INFO] [stderr] 47 | #include [INFO] [stderr] | ^~~~~~~~~~~~~ [INFO] [stderr] compilation terminated. [INFO] [stderr] make: *** [Makefile:133: hfile_libcurl.o] Error 1 [INFO] [stderr] thread 'main' panicked at 'failed to build htslib', /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hts-sys-1.10.2/build.rs:86:9 [INFO] [stderr] stack backtrace: [INFO] [stderr] 0: 0x560066c555f5 - backtrace::backtrace::libunwind::trace::h07c956be65d9b461 [INFO] [stderr] at /cargo/registry/src/github.com-1ecc6299db9ec823/backtrace-0.3.46/src/backtrace/libunwind.rs:86 [INFO] [stderr] 1: 0x560066c555f5 - backtrace::backtrace::trace_unsynchronized::h2fdb9e4177ad4d20 [INFO] [stderr] at /cargo/registry/src/github.com-1ecc6299db9ec823/backtrace-0.3.46/src/backtrace/mod.rs:66 [INFO] [stderr] 2: 0x560066c555f5 - std::sys_common::backtrace::_print_fmt::ha62d8426311107ac [INFO] [stderr] at src/libstd/sys_common/backtrace.rs:78 [INFO] [stderr] 3: 0x560066c555f5 - ::fmt::h3ec6bdab62f1e8d9 [INFO] [stderr] at src/libstd/sys_common/backtrace.rs:59 [INFO] [stderr] 4: 0x560066c815cc - core::fmt::write::h935cb0ed4078a853 [INFO] [stderr] at src/libcore/fmt/mod.rs:1076 [INFO] [stderr] 5: 0x560066c51273 - std::io::Write::write_fmt::hc912aacf8d691eb3 [INFO] [stderr] at src/libstd/io/mod.rs:1537 [INFO] [stderr] 6: 0x560066c586d0 - std::sys_common::backtrace::_print::h460db802d801ccf8 [INFO] [stderr] at src/libstd/sys_common/backtrace.rs:62 [INFO] [stderr] 7: 0x560066c586d0 - std::sys_common::backtrace::print::h399d664f56640530 [INFO] [stderr] at src/libstd/sys_common/backtrace.rs:49 [INFO] [stderr] 8: 0x560066c586d0 - std::panicking::default_hook::{{closure}}::hc6dfd87957c765b8 [INFO] [stderr] at src/libstd/panicking.rs:198 [INFO] [stderr] 9: 0x560066c5841c - std::panicking::default_hook::hfdceba6d6d1a18ae [INFO] [stderr] at src/libstd/panicking.rs:218 [INFO] [stderr] 10: 0x560066c58d07 - std::panicking::rust_panic_with_hook::hd01e282bff1b1e63 [INFO] [stderr] at src/libstd/panicking.rs:486 [INFO] [stderr] 11: 0x5600669e5eeb - std::panicking::begin_panic::h6c129e08e051e4aa [INFO] [stderr] at /rustc/b7dc83a3f6ca9746fb3d121761c3605477b77d90/src/libstd/panicking.rs:410 [INFO] [stderr] 12: 0x5600666803ab - build_script_build::main::hb4a48445c104f864 [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hts-sys-1.10.2/build.rs:86 [INFO] [stderr] 13: 0x560066681fdb - std::rt::lang_start::{{closure}}::h1746879bb07e8f9d [INFO] [stderr] at /rustc/b7dc83a3f6ca9746fb3d121761c3605477b77d90/src/libstd/rt.rs:67 [INFO] [stderr] 14: 0x560066c59198 - std::rt::lang_start_internal::{{closure}}::haabc9d435e1b0c2f [INFO] [stderr] at src/libstd/rt.rs:52 [INFO] [stderr] 15: 0x560066c59198 - std::panicking::try::do_call::h54d9370b0ac83700 [INFO] [stderr] at src/libstd/panicking.rs:297 [INFO] [stderr] 16: 0x560066c59198 - std::panicking::try::h85e1c41421d5b6f9 [INFO] [stderr] at src/libstd/panicking.rs:274 [INFO] [stderr] 17: 0x560066c59198 - std::panic::catch_unwind::hfd957e6c9fdcf274 [INFO] [stderr] at src/libstd/panic.rs:394 [INFO] [stderr] 18: 0x560066c59198 - std::rt::lang_start_internal::hed9744eef32ef5a1 [INFO] [stderr] at src/libstd/rt.rs:51 [INFO] [stderr] 19: 0x560066681fb7 - std::rt::lang_start::h618fed2a155c279b [INFO] [stderr] at /rustc/b7dc83a3f6ca9746fb3d121761c3605477b77d90/src/libstd/rt.rs:67 [INFO] [stderr] 20: 0x56006668174a - main [INFO] [stderr] 21: 0x7f0a4f5b70b3 - __libc_start_main [INFO] [stderr] 22: 0x56006667f1be - _start [INFO] [stderr] 23: 0x0 - [INFO] [stderr] [INFO] [stderr] warning: build failed, waiting for other jobs to finish... [INFO] [stderr] error: build failed [INFO] running `"docker" "inspect" "85280f1acd6f31eb14d01e51648a9294951fe90be19eb7ff0d073d2340739c3f"` [INFO] running `"docker" "rm" "-f" "85280f1acd6f31eb14d01e51648a9294951fe90be19eb7ff0d073d2340739c3f"` [INFO] [stdout] 85280f1acd6f31eb14d01e51648a9294951fe90be19eb7ff0d073d2340739c3f