[INFO] updating cached repository https://github.com/Arkanosis/bamrescue [INFO] running `"git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "-c" "remote.origin.fetch=refs/heads/*:refs/heads/*" "fetch" "origin" "--force" "--prune"` [INFO] [stderr] From https://github.com/Arkanosis/bamrescue [INFO] [stderr] - [deleted] (none) -> dependabot/cargo/futures-0.3.4 [INFO] [stderr] * [new branch] dependabot/cargo/futures-0.3.5 -> dependabot/cargo/futures-0.3.5 [INFO] [stderr] * [new branch] dependabot/cargo/serde-1.0.111 -> dependabot/cargo/serde-1.0.111 [INFO] running `"git" "rev-parse" "HEAD"` [INFO] [stdout] ff3deca79f618b0ac6aa4babc58a3698945ec112 [INFO] testing Arkanosis/bamrescue against beta-2020-06-03 for beta-1.45-1 [INFO] running `"git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FArkanosis%2Fbamrescue" "/workspace/builds/worker-11/source"` [INFO] [stderr] Cloning into '/workspace/builds/worker-11/source'... [INFO] [stderr] done. [INFO] validating manifest of git repo https://github.com/Arkanosis/bamrescue on toolchain beta-2020-06-03 [INFO] running `"/workspace/cargo-home/bin/cargo" "+beta-2020-06-03" "read-manifest" "--manifest-path" "Cargo.toml"` [INFO] started tweaking git repo https://github.com/Arkanosis/bamrescue [INFO] finished tweaking git repo https://github.com/Arkanosis/bamrescue [INFO] tweaked toml for git repo https://github.com/Arkanosis/bamrescue written to /workspace/builds/worker-11/source/Cargo.toml [INFO] crate git repo https://github.com/Arkanosis/bamrescue already has a lockfile, it will not be regenerated [INFO] running `"/workspace/cargo-home/bin/cargo" "+beta-2020-06-03" "fetch" "--locked" "--manifest-path" "Cargo.toml"` [INFO] running `"docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-11/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-11/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=0" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2020-06-03" "build" "--frozen"` [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] [stdout] fc2c37df236e3f1a41d18747429f2aacc2e975eee68e82592de203724039a405 [INFO] running `"docker" "start" "-a" "fc2c37df236e3f1a41d18747429f2aacc2e975eee68e82592de203724039a405"` [INFO] [stderr] sudo: setrlimit(RLIMIT_CORE): Operation not permitted [INFO] [stderr] Compiling syn v1.0.18 [INFO] [stderr] Compiling number_prefix v0.3.0 [INFO] [stderr] Compiling strsim v0.9.3 [INFO] [stderr] Compiling number_prefix v0.4.0 [INFO] [stderr] Compiling termios v0.3.2 [INFO] [stderr] Compiling clicolors-control v1.0.1 [INFO] [stderr] Compiling futures-cpupool v0.1.8 [INFO] [stderr] Compiling console v0.10.0 [INFO] [stderr] Compiling indicatif v0.14.0 [INFO] [stderr] Compiling serde_derive v1.0.106 [INFO] [stderr] Compiling serde v1.0.106 [INFO] [stderr] Compiling docopt v1.1.0 [INFO] [stderr] Compiling bamrescue v0.3.0-dev (/opt/rustwide/workdir) [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 39.84s [INFO] running `"docker" "inspect" "fc2c37df236e3f1a41d18747429f2aacc2e975eee68e82592de203724039a405"` [INFO] running `"docker" "rm" "-f" "fc2c37df236e3f1a41d18747429f2aacc2e975eee68e82592de203724039a405"` [INFO] [stdout] fc2c37df236e3f1a41d18747429f2aacc2e975eee68e82592de203724039a405 [INFO] running `"docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-11/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-11/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=0" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2020-06-03" "test" "--frozen" "--no-run"` [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] [stdout] f9c76abe928312202c69a6ea4dd03fad49e906d6ba9db6ca2c77d1203c195595 [INFO] running `"docker" "start" "-a" "f9c76abe928312202c69a6ea4dd03fad49e906d6ba9db6ca2c77d1203c195595"` [INFO] [stderr] sudo: setrlimit(RLIMIT_CORE): Operation not permitted [INFO] [stderr] Compiling bamrescue v0.3.0-dev (/opt/rustwide/workdir) [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 3.15s [INFO] running `"docker" "inspect" "f9c76abe928312202c69a6ea4dd03fad49e906d6ba9db6ca2c77d1203c195595"` [INFO] running `"docker" "rm" "-f" "f9c76abe928312202c69a6ea4dd03fad49e906d6ba9db6ca2c77d1203c195595"` [INFO] [stdout] f9c76abe928312202c69a6ea4dd03fad49e906d6ba9db6ca2c77d1203c195595 [INFO] running `"docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-11/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-11/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=0" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2020-06-03" "test" "--frozen"` [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] [stdout] d79a59d308c37a6b0c3dbe300af52b7044204927cce831ea2353a196983e3fd3 [INFO] running `"docker" "start" "-a" "d79a59d308c37a6b0c3dbe300af52b7044204927cce831ea2353a196983e3fd3"` [INFO] [stderr] sudo: setrlimit(RLIMIT_CORE): Operation not permitted [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 0.72s [INFO] [stderr] Running /opt/rustwide/target/debug/deps/bamrescue-a82e806a9a9c55ee [INFO] [stderr] Running /opt/rustwide/target/debug/deps/bamrescue-6571c4c74f9535db [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Running /opt/rustwide/target/debug/deps/check-811d18a26c33881e [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] running 26 tests [INFO] [stdout] test empty_file ... ok [INFO] [stdout] test single_block_missing_bgzf_identifier ... ok [INFO] [stdout] test single_block_missing_gzip_identifier ... ok [INFO] [stdout] test empty_with_extra_similar_subfields_after_bam ... ok [INFO] [stdout] test single_block_bam ... ok [INFO] [stdout] test empty_with_extra_similar_subfields_before_and_after_bam ... ok [INFO] [stdout] test empty_with_extra_subfields_before_and_after_bam ... ok [INFO] [stdout] test single_block_missing_empty_bam ... ok [INFO] [stdout] test empty_with_extra_subfields_before_bam ... ok [INFO] [stdout] test three_blocks_bad_inflated_payload_size_bam ... ok [INFO] [stdout] test empty_bam ... ok [INFO] [stdout] test empty_with_extra_similar_subfields_before_bam ... ok [INFO] [stdout] test three_blocks_bam ... ok [INFO] [stdout] test three_blocks_empty_inside_bam ... ok [INFO] [stdout] test empty_with_extra_subfields_after_bam ... ok [INFO] [stdout] test three_blocks_bad_inflated_payload_crc32_bam ... ok [INFO] [stdout] test three_blocks_too_large_bgzf_size_bam ... ok [INFO] [stdout] test three_blocks_too_small_bgzf_size_bam ... ok [INFO] [stdout] test two_blocks_missing_empty_bam ... ok [INFO] [stdout] test three_blocks_with_extra_subfields_before_and_after_bam ... ok [INFO] [stdout] test three_blocks_with_extra_subfields_after_bam ... ok [INFO] [stdout] test three_blocks_with_extra_similar_subfields_before_and_after_bam ... ok [INFO] [stdout] test three_blocks_with_extra_similar_subfields_after_bam ... ok [INFO] [stdout] test three_blocks_with_extra_similar_subfields_before_bam ... ok [INFO] [stdout] test three_blocks_with_extra_subfields_before_bam ... ok [INFO] [stdout] test two_blocks_bam ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 26 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out [INFO] [stdout] [INFO] [stderr] Running /opt/rustwide/target/debug/deps/rescue-ad8749b7edaec953 [INFO] [stdout] [INFO] [stdout] running 26 tests [INFO] [stdout] test empty_file ... ok [INFO] [stdout] test empty_with_extra_subfields_before_and_after_bam ... ok [INFO] [stdout] test empty_with_extra_subfields_after_bam ... ok [INFO] [stdout] test empty_bam ... ok [INFO] [stdout] test empty_with_extra_subfields_before_bam ... ok [INFO] [stdout] test empty_with_extra_similar_subfields_before_and_after_bam ... ok [INFO] [stdout] test single_block_missing_gzip_identifier ... ok [INFO] [stdout] test empty_with_extra_similar_subfields_after_bam ... ok [INFO] [stdout] test single_block_missing_bgzf_identifier ... ok [INFO] [stdout] test single_block_bam ... ok [INFO] [stdout] test single_block_missing_empty_bam ... ok [INFO] [stdout] test empty_with_extra_similar_subfields_before_bam ... ok [INFO] [stdout] test three_blocks_bad_inflated_payload_crc32_bam ... ok [INFO] [stdout] test three_blocks_too_large_bgzf_size_bam ... ok [INFO] [stdout] test three_blocks_empty_inside_bam ... ok [INFO] [stdout] test three_blocks_bad_inflated_payload_size_bam ... ok [INFO] [stdout] test three_blocks_bam ... ok [INFO] [stdout] test three_blocks_too_small_bgzf_size_bam ... ok [INFO] [stdout] test three_blocks_with_extra_subfields_before_and_after_bam ... ok [INFO] [stdout] test three_blocks_with_extra_subfields_after_bam ... ok [INFO] [stdout] test three_blocks_with_extra_similar_subfields_before_and_after_bam ... ok [INFO] [stdout] test three_blocks_with_extra_similar_subfields_after_bam ... ok [INFO] [stdout] test three_blocks_with_extra_similar_subfields_before_bam ... ok [INFO] [stdout] test two_blocks_missing_empty_bam ... ok [INFO] [stdout] test three_blocks_with_extra_subfields_before_bam ... ok [INFO] [stdout] test two_blocks_bam ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 26 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Running /opt/rustwide/target/debug/deps/version-6edfe5927cc98b87 [INFO] [stdout] running 1 test [INFO] [stdout] test version ... ok [INFO] [stderr] Doc-tests bamrescue [INFO] [stdout] [INFO] [stdout] test result: ok. 1 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out [INFO] [stdout] [INFO] running `"docker" "inspect" "d79a59d308c37a6b0c3dbe300af52b7044204927cce831ea2353a196983e3fd3"` [INFO] running `"docker" "rm" "-f" "d79a59d308c37a6b0c3dbe300af52b7044204927cce831ea2353a196983e3fd3"` [INFO] [stdout] d79a59d308c37a6b0c3dbe300af52b7044204927cce831ea2353a196983e3fd3