[INFO] updating cached repository https://github.com/10XGenomics/vartrix
[INFO] running `"git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "-c" "remote.origin.fetch=refs/heads/*:refs/heads/*" "fetch" "origin" "--force" "--prune"`
[INFO] running `"git" "rev-parse" "HEAD"`
[INFO] [stdout] ee58dab610c5be5e8605aa913610eb510f49f1b6
[INFO] testing 10XGenomics/vartrix against beta-2020-06-03 for beta-1.45-1
[INFO] running `"git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2F10XGenomics%2Fvartrix" "/workspace/builds/worker-14/source"`
[INFO] [stderr] Cloning into '/workspace/builds/worker-14/source'...
[INFO] [stderr] done.
[INFO] validating manifest of git repo https://github.com/10XGenomics/vartrix on toolchain beta-2020-06-03
[INFO] running `"/workspace/cargo-home/bin/cargo" "+beta-2020-06-03" "read-manifest" "--manifest-path" "Cargo.toml"`
[INFO] started tweaking git repo https://github.com/10XGenomics/vartrix
[INFO] finished tweaking git repo https://github.com/10XGenomics/vartrix
[INFO] tweaked toml for git repo https://github.com/10XGenomics/vartrix written to /workspace/builds/worker-14/source/Cargo.toml
[INFO] crate git repo https://github.com/10XGenomics/vartrix already has a lockfile, it will not be regenerated
[INFO] running `"/workspace/cargo-home/bin/cargo" "+beta-2020-06-03" "fetch" "--locked" "--manifest-path" "Cargo.toml"`
[INFO] running `"docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-14/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-14/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=0" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2020-06-03" "build" "--frozen"`
[INFO] [stdout] 3647375c3ecd1eeb1890d960cc675a58acea098a82fdcdaeb9b83deda9f7ec77
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] running `"docker" "start" "-a" "3647375c3ecd1eeb1890d960cc675a58acea098a82fdcdaeb9b83deda9f7ec77"`
[INFO] [stderr] sudo: setrlimit(RLIMIT_CORE): Operation not permitted
[INFO] [stderr]    Compiling proc-macro2 v1.0.3
[INFO] [stderr]    Compiling cc v1.0.45
[INFO] [stderr]    Compiling syn v1.0.5
[INFO] [stderr]    Compiling syn v0.15.44
[INFO] [stderr]    Compiling bitflags v1.2.1
[INFO] [stderr]    Compiling bindgen v0.52.0
[INFO] [stderr]    Compiling feature-probe v0.1.1
[INFO] [stderr]    Compiling ndarray v0.12.1
[INFO] [stderr]    Compiling rawpointer v0.2.1
[INFO] [stderr]    Compiling ndarray v0.13.0
[INFO] [stderr]    Compiling bio v0.30.0
[INFO] [stderr]    Compiling ieee754 v0.2.6
[INFO] [stderr]    Compiling linear-map v1.2.0
[INFO] [stderr]    Compiling bytecount v0.6.0
[INFO] [stderr]    Compiling strum v0.16.0
[INFO] [stderr]    Compiling num-traits v0.2.8
[INFO] [stderr]    Compiling num-integer v0.1.41
[INFO] [stderr]    Compiling num-complex v0.2.3
[INFO] [stderr]    Compiling fs-utils v1.1.1
[INFO] [stderr]    Compiling itertools v0.8.0
[INFO] [stderr]    Compiling itertools v0.7.11
[INFO] [stderr]    Compiling itertools v0.6.5
[INFO] [stderr]    Compiling miniz_oxide v0.3.2
[INFO] [stderr]    Compiling matrixmultiply v0.2.3
[INFO] [stderr]    Compiling log v0.4.8
[INFO] [stderr]    Compiling memchr v2.2.1
[INFO] [stderr]    Compiling getrandom v0.1.12
[INFO] [stderr]    Compiling rand_os v0.1.3
[INFO] [stderr]    Compiling rand v0.4.6
[INFO] [stderr]    Compiling dirs v1.0.5
[INFO] [stderr]    Compiling time v0.1.42
[INFO] [stderr]    Compiling terminal_size v0.1.8
[INFO] [stderr]    Compiling newtype_derive v0.1.6
[INFO] [stderr]    Compiling url v2.1.1
[INFO] [stderr]    Compiling bv v0.11.0
[INFO] [stderr]    Compiling term v0.5.2
[INFO] [stderr]    Compiling rand v0.6.5
[INFO] [stderr]    Compiling rand_core v0.5.1
[INFO] [stderr]    Compiling aho-corasick v0.7.6
[INFO] [stderr]    Compiling nom v4.2.3
[INFO] [stderr]    Compiling csv-core v0.1.6
[INFO] [stderr]    Compiling rand_chacha v0.2.1
[INFO] [stderr]    Compiling flate2 v1.0.11
[INFO] [stderr]    Compiling uuid v0.6.5
[INFO] [stderr]    Compiling tempdir v0.3.7
[INFO] [stderr]    Compiling rand v0.7.2
[INFO] [stderr]    Compiling rayon v1.2.0
[INFO] [stderr]    Compiling quote v1.0.2
[INFO] [stderr]    Compiling num-traits v0.1.43
[INFO] [stderr]    Compiling num-complex v0.1.43
[INFO] [stderr]    Compiling itertools-num v0.1.3
[INFO] [stderr]    Compiling ordered-float v1.0.2
[INFO] [stderr]    Compiling approx v0.3.2
[INFO] [stderr]    Compiling libloading v0.5.2
[INFO] [stderr]    Compiling backtrace-sys v0.1.31
[INFO] [stderr]    Compiling bzip2-sys v0.1.7
[INFO] [stderr]    Compiling lzma-sys v0.1.15
[INFO] [stderr]    Compiling libz-sys v1.0.25
[INFO] [stderr]    Compiling statrs v0.11.0
[INFO] [stderr]    Compiling regex v1.3.1
[INFO] [stderr]    Compiling cexpr v0.3.6
[INFO] [stderr]    Compiling chrono v0.4.9
[INFO] [stderr]    Compiling alga v0.5.4
[INFO] [stderr]    Compiling clang-sys v0.28.1
[INFO] [stderr]    Compiling tempfile v3.1.0
[INFO] [stderr]    Compiling backtrace v0.3.37
[INFO] [stderr]    Compiling simplelog v0.5.3
[INFO] [stderr]    Compiling os_type v2.2.0
[INFO] [stderr]    Compiling synstructure v0.10.2
[INFO] [stderr]    Compiling failure_derive v0.1.5
[INFO] [stderr]    Compiling snafu-derive v0.5.0
[INFO] [stderr]    Compiling failure v0.1.5
[INFO] [stderr]    Compiling serde_derive v1.0.101
[INFO] [stderr]    Compiling snafu-derive v0.6.2
[INFO] [stderr]    Compiling getset v0.0.9
[INFO] [stderr]    Compiling strum_macros v0.16.0
[INFO] [stderr]    Compiling snafu v0.5.0
[INFO] [stderr]    Compiling hts-sys v1.9.0 (https://github.com/rust-bio/rust-htslib.git?rev=37533bded4692a78cfe080378a09209b95dc3cca#37533bde)
[INFO] [stderr]    Compiling snafu v0.6.0
[INFO] [stderr]    Compiling serde v1.0.101
[INFO] [stderr]    Compiling vec_map v0.8.1
[INFO] [stderr]    Compiling bio-types v0.5.1
[INFO] [stderr]    Compiling bstr v0.2.8
[INFO] [stderr]    Compiling multimap v0.6.0
[INFO] [stderr]    Compiling toml v0.4.10
[INFO] [stderr]    Compiling sprs v0.6.5
[INFO] [stderr]    Compiling clap v2.33.0
[INFO] [stderr]    Compiling human-panic v1.0.1
[INFO] [stderr]    Compiling csv v1.1.1
[INFO] [stderr]    Compiling rust-htslib v0.26.1 (https://github.com/rust-bio/rust-htslib.git?rev=37533bded4692a78cfe080378a09209b95dc3cca#37533bde)
[INFO] [stderr]    Compiling vartrix v1.1.14 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished dev [unoptimized + debuginfo] target(s) in 3m 54s
[INFO] running `"docker" "inspect" "3647375c3ecd1eeb1890d960cc675a58acea098a82fdcdaeb9b83deda9f7ec77"`
[INFO] running `"docker" "rm" "-f" "3647375c3ecd1eeb1890d960cc675a58acea098a82fdcdaeb9b83deda9f7ec77"`
[INFO] [stdout] 3647375c3ecd1eeb1890d960cc675a58acea098a82fdcdaeb9b83deda9f7ec77
[INFO] running `"docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-14/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-14/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=0" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2020-06-03" "test" "--frozen" "--no-run"`
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] [stdout] 6bf109a1f941a0f23100770d617fac0e7509343db9c6054ab66829d4228e8254
[INFO] running `"docker" "start" "-a" "6bf109a1f941a0f23100770d617fac0e7509343db9c6054ab66829d4228e8254"`
[INFO] [stderr] sudo: setrlimit(RLIMIT_CORE): Operation not permitted
[INFO] [stderr]    Compiling vartrix v1.1.14 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished test [unoptimized + debuginfo] target(s) in 10.16s
[INFO] running `"docker" "inspect" "6bf109a1f941a0f23100770d617fac0e7509343db9c6054ab66829d4228e8254"`
[INFO] running `"docker" "rm" "-f" "6bf109a1f941a0f23100770d617fac0e7509343db9c6054ab66829d4228e8254"`
[INFO] [stdout] 6bf109a1f941a0f23100770d617fac0e7509343db9c6054ab66829d4228e8254
[INFO] running `"docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-14/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-14/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=0" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2020-06-03" "test" "--frozen"`
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] [stdout] d2de61624d6121cc5d31e6c4ad1a5b35994e975c8ec42757e765c9d011da0388
[INFO] running `"docker" "start" "-a" "d2de61624d6121cc5d31e6c4ad1a5b35994e975c8ec42757e765c9d011da0388"`
[INFO] [stderr] sudo: setrlimit(RLIMIT_CORE): Operation not permitted
[INFO] [stderr]     Finished test [unoptimized + debuginfo] target(s) in 0.42s
[INFO] [stderr]      Running /opt/rustwide/target/debug/deps/vartrix-a99d3c3f30292bb4
[INFO] [stdout] 
[INFO] [stdout] running 7 tests
[INFO] [stderr] 10:48:10 [ERROR] The resulting matrix has a sum of 0. Did you use the --umi flag on data without UMIs?
[INFO] [stdout] test tests::test_coverage_matrices_umi_dna ... ok
[INFO] [stdout] test tests::test_consensus_matrix ... ok
[INFO] [stdout] test tests::test_coverage_matrices_umi ... ok
[INFO] [stdout] test tests::test_coverage_matrices ... ok
[INFO] [stdout] test tests::test_frac_matrix ... ok
[INFO] [stdout] test tests::test_coverage_matrices_umi_gzipped_bcs ... ok
[INFO] [stdout] test tests::test_coverage_matrices_dna ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 7 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out
[INFO] [stdout] 
[INFO] running `"docker" "inspect" "d2de61624d6121cc5d31e6c4ad1a5b35994e975c8ec42757e765c9d011da0388"`
[INFO] running `"docker" "rm" "-f" "d2de61624d6121cc5d31e6c4ad1a5b35994e975c8ec42757e765c9d011da0388"`
[INFO] [stdout] d2de61624d6121cc5d31e6c4ad1a5b35994e975c8ec42757e765c9d011da0388